These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7063#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1013 fasta sequence [GAGGCAGAATCCCGCACGAGTGTACTACTACTACTGCTACTCGTAA-TGTC-ATAGGCGAAAGGAAAGTTACTGTGTCGATGGGAAAAG-TTGCCGAAAAGTTGTCATTCCAGTACGCTGTGGTTGGCCAGTACGTACTCCACCATCGTCGCTGGTGTTGCTGCTGCTGTGTCGATGCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGATTCACCATGTCTGGCCGATCGCGGCAACCTAAAAGCATGCTAGAAATGCCAACCCGTGTAAAAACAAAAGCATAAC-CAAACACACTCCTCCGAGAGCTGTTCGCGTGAAGCCCATGAACTAGCAGCCGTGCTTTGGATGGAT---GTAGCCACCTACA-CCAAAGCGCTCGCTGTTCCTTCTCAAATGTT-CGACTCC-GTCCCT-GCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGAAGCGTCGGA-GCAACCGATTGAGAAGGAAGCG-AAACAAACGGTAAGGGATGCGGAGCTGT--TTTGCTCGGTAAACGTTGAA-GAAAGCTGC-TTCAACGTT--GGCCACCTA-GAAACGTGTGCCTACTTCGACGGTCTCTATGCAATGGTGTTTAAAATGCAACCAAACCCGTAAACCACTACCAACCTCGATAATACAAAACGATCTAGTATTTCTGTAAATCCCAACTACCCGAGCAAACGTAATCAAACACGTTCTGTGTTTAAATACCGTCGAAATCGTTCACACCTTGCATTCGCGGTCTTCTGTCCGTCGTCGTACAATACTTCCGTC-GTGAACAGATCAACAAATGCAAGAACCGCTTTCCCAATGGATTTCGTTGCCCGTCCGCTTCGCATTCACAAAGTTGCATTAATGTACCAAAATGCAACTGTCCGATAAAAAAATCCCCTACAAAAGAGGTCGCAGCGCCGCAACATAATAAGCACCTAGAGTTGCATTGAAAAAAAAGAAGAAAATATCAATTCAAACCACATGTGTTGCTCGTG] [+] EMBL BX466501 [GAGGCAGAATCCCGCACGAGTGTACTACTACTACTGCTACTCGTAACTGTC ATAGGCGAAAGGAAAGTTACTGTGTCGATGGGAAAAG TTGCCGAAAAGTTGTCATTCCAGTACGCTGTGGTTGGCCAGTACGTACTCCACCATCGTCGCTGGTGTTGCTGCTGCTGTGTCGATGCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGATTCACCATGTCTGGCCGATCGCGGCAACCTAAAAGCATGCTAGATATGCCAAACCGTGTAAAAACAAAAGCATAAC CAAACACACTCCTCCGAGAGCTGTTCGCGTGAAGCCCATGAACTAGCAGCCGTGCTTTGGATGGAT GTAGCCACCTACAGCCAAAGCGCTCGCTGTTCCTTCTCAAATGTTACGACTCCGGTCCCTGGCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGATGCGTCGGAGGCAACCGATTGAGAAGGAAGCGAAAACAAACGGTAAGGGATGCGGAGCTGTGNTAGGCTCGGTAAACGTNGAACGAAAGCTGCGTTCAACGGTNGGGCCACCTAGGAAACGTGTGCC ] [+] EMBL BX625503 [ CTACTACTGCTACTCGTAA TGTCAATAGGCGAAAGGAAAGTTACTGTGTCGATGGGAAAAGTTTGCCGAAAAGTTGTCATTCCAGTACGCTGTGGTTGGCCAGTACGTACTCCACCATCGTCGCTGGTGTTGCTGCTGCTGTGTCGATGCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGATTCACCATGTCTGGCCGATCGCGGCAACCTAAAAGCATGCTAGAAATGCCAACCCGTGTAAAAACAAAAGCATAAC CAAACACACTCCTCCGAGAGCTGTTCGCGTGAAGCCCATGAACTAGCAGCCGTGCTTTGGATGGATGTAGTAGCCACCTACA CCAAAGCGCTCGCTGTTCCTTCTCAAATGTT CGACTCC GTCCCT GCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGAAGCGTCGGA GCAACCGATTGAGAAGGAAGCG AAACAAACGGTAAGGGATGCGGAGCTGT TTTGCTCGGCAAACGTTGAA GAAAGCTGC TTCAACGTT GGCCACCTA GAAACGTGTGCCTACTTCGACGGTCTCTATGCAATGGTGTTTAAAATGCAACCAAACCCGTAAACCACTACCAACCTCGATAATACAAAACGATCTAGTATTTCTGTAAATCCCAACTACCCGAGCAAACGTAATCAAACACGTTCTGTGTTTAAATACCGTCGAAATCGTTCACACCTTGCATTCGCGGTCTTCTGTCCGTCGTCGTACAATACTTNCGTC GTGAACAGATCAACNAATGCAA ] [+] EMBL BM649996 [ ccgATTAAATCGTACCAAAACACTAAATCGATTCACCATGTCTGGCCGATCGCGGCAACCTAAAAGCATGCTAGAAATGCCAACCCGTGTAAAAAAAAAA AAAACATAAAATCACTCCTCCGAGAGCTGTTCGCGTGAAGCCCATGAACTAGCAGCCGTGCTTTGGATGGAT GTAGCCACCTACA CCAAAGCGCTCGCTGTTCCTTCTCAAATGTT CGACTCC GTCCCT GCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGAAGCGTCGGA GCAACCGATTGAGAAGGAAGCG AAACAAACGGTAAGGGATGCGGAGCTGT TTTGCTCGGTAAACGTTGAA GAAAGCTGC TTCAACGTT GGCCACCTA GAAACGTGTGCCTACTTCGACGGTCTCTATGCAATGGTGTTTAAAATGCAACCAAACCCGTAAACCACTACCAACCTCGATAATACAAAACGATCTAGTATTTCTGTAAATCCCAACTACCCGAGCAAACG ] [+] EMBL BM649694 [ ccgGTTCGCGTGAAGCCCATGAACTAGCAGCCGTGCTTTGGATGGAT GTAGCCACCTACA CCAAAGCGCTCGCTGTTCCTTCTCAAATGTT CGACTCC GTCCCT GCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGAAGCGTCGGA GCAACCGATTGAGAAGGAAGCG AAACAAACGGTAAGGGATGCGGAGCTGT TTTGCTCGGTAAACGTTGAA GAAAGCTGC TTCAACGTT GGCCACCTA GAAACGTGTGCCTACTTCGACGGTCTCTATGCAATGGTGTTTAAAATGCAACCAAACCCGTAAACCACTACCAACCTCGATAATACAAAACGATCTAGTATTTCTGTAAATCCCAACTACCCGAGCAAACGTAATCAAACACGTTCTGTGTTTAAATACCGTCGAAATCGTTCACACCTTGCATTCGCGGTCTTCTGTCCGTCGTCGTACAATACTTCCGTC GTGAACAGATCAACAAATGCGAGAACCGCTTTCCCAATGGATTTCGTTGCCCGTCCGCTTCGCATTCACAAAGTTGCATTAATGTACCAAAATGCAACTGTCCGATAAAAAAATCCCCTACAAAAGAGGTCGCAGCGCCGCAACATAATAAGCACCTAGAGTTGCATTGAAAAAAAAGAAGAAAATATCAATTCAAACCACATGTGTTGCTCGTG] [+] EMBL BM655625 [ CCCT GCTGTGCCATGGGGCAAGGGAATTCTTCCAGAAATATGAACCGTCGGA CCAACCGATTGAGAAGGAAGCG AAACAAACGGTAAGGGATGCGGAGCTGT TTTGCTCGGCAAACGTTGAA GAAAGCTGC TTCAACGTT GGCCACCTA AAAACGTGTGCCTACTTCGACGGTCTCTATGCAATGGTGTTTAAAATGCAACCAAACCCGTAAACCACTACCAACCTCGATAATACAAAACGATCTAGGATTTCTGTAAATCCCAACTACCCGAGCAAACGTAATCAAACACGTTCTGAGTTTAAATACCGCCGAAATCGTTCACACCTTGCATTCGCGGTCTTCTGTCCGTCGTCGTACAATACTTCCGTCGGGGAACAGATCAACAAATGCAAGAACCTCTTTCCCAATGGATTTCGTTGCCCG ] consensusID : consensus_7063#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 936 fasta sequence [GAATCGCCCGAGGTNATACTACTACTACTGCTACTCNCTAATGTCATAGGCGAAAGGAAAGTTACTGTGTCGATGGGAAAAGTTTGCCGAAAAGTTGTCATTCCAGTACGCTGTGGTTGGCCAGTACGTACTACCANCATACGTCGCTGGTGTTTGCTNGCTGCTGTGTACGATGCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGATTCACCATGTCTGGCCGATCGCGGCAACTTAAAAGCATGCTAGAAATGCCAACCCGTGTAAAAACAAAAGCATAACCAAACACACTCCTCCGAGAGCTTGTTCGCGTGAAGCCCATGAACTAGCAGACCGTGCTTNTGGATGGATGTAGCCACCTACACCAAAGCGCTCGCTGTTCCTTCTCAAATGTTCGACTCCGTCCCTGCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGAAGCGTCGGAGCAACCGATTGAGAAGGACNGCTAAACAAACGGTAAGGGATGCGGAGCTGTTTAGCTCGGCAACGTCTGAAGACACGCTGCTTCAACGTATGGTACCTAAAACGTGTGCCTACTTNCGACGGTCNCTATGCAATGGTGTATANACATGGAACCAAAACCCGTAAACNATAAACCAAAGCCCCCGGATTAANTAACCANTAGCACTGGTCNCTAGCATTATGTCTCTTGGACATTTCCCCAGTTAANCCCGNGCGGAACNCCGGTNAGCCTGAGACACCAGGTGCGNTGGTTGGTAACAACTAANCACAGNCAAANTCCGATCAGGACCTTTGNNTTACAGGNGCGATCTCTGGCAGNCGACCGACACAATGAATNTCAGNAGNNGACACNGATGCACANCATGCGCAAACCTATTACCCAGGGTTAAGATGCCGNCGCGATCCAGCTACACCA] [+] EMBL AL931245 [GAATCGCCCGAGGTNATACTACTACTACTGCTACTCNCTAATGTCATAGGCGAAAGGAAAGTTACTGTGTCGATGGGAAAAGTTTGCCGAAAAGTTGTCATTCCAGTACGCTGTGGTTGGCCAGTACGTACTACCANCATACGTCGCTGGTGTTTGCTNGCTGCTGTGTACGATGCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGATTCACCATGTCTGGCCGATCGCGGCAACTTAAAAGCATGCTAGAAATGCCAACCCGTGTAAAAACAAAAGCATAACCAAACACACTCCTCCGAGAGCTTGTTCGCGTGAAGCCCATGAACTAGCAGACCGTGCTTNTGGATGGATGTAGCCACCTACACCAAAGCGCTCGCTGTTCCTTCTCAAATGTTCGACTCCGTCCCTGCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGAAGCGTCGGAGCAACCGATTGAGAAGGACNGCTAAACAAACGGTAAGGGATGCGGAGCTGTTTAGCTCGGCAACGTCTGAAGACACGCTGCTTCAACGTATGGTACCTAAAACGTGTGCCTACTTNCGACGGTCNCTATGCAATGGTGTATANACATGGAACCAAAACCCGTAAACNATAAACCAAAGCCCCCGGATTAANTAACCANTAGCACTGGTCNCTAGCATTATGTCTCTTGGACATTTCCCCAGTTAANCCCGNGCGGAACNCCGGTNAGCCTGAGACACCAGGTGCGNTGGTTGGTAACAACTAANCACAGNCAAANTCCGATCAGGACCTTTGNNTTACAGGNGCGATCTCTGGCAGNCGACCGACACAATGAATNTCAGNAGNNGACACNGATGCACANCATGCGCAAACCTATTACCCAGGGTTAAGATGCCGNCGCGATCCAGCTACACCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7063#0 GAGGCAGAATCCCGCACGAGTGTACTACTACTACTGCTACTCG-TAATGTCATAGGCGAA 59 consensus_7063#1 ------GAATCGCCCGAGGTNATACTACTACTACTGCTACTCNCTAATGTCATAGGCGAA 54 ***** * * * ******************** **************** consensus_7063#0 AGGAAAGTTACTGTGTCGATGGGAAAAGTT-GCCGAAAAGTTGTCATTCCAGTACGCTGT 118 consensus_7063#1 AGGAAAGTTACTGTGTCGATGGGAAAAGTTTGCCGAAAAGTTGTCATTCCAGTACGCTGT 114 ****************************** ***************************** consensus_7063#0 GGTTGGCCAGTACGTACT-CCACCAT-CGTCGCTGGTGTTG--CTGCTGCTGTGT-CGAT 173 consensus_7063#1 GGTTGGCCAGTACGTACTACCANCATACGTCGCTGGTGTTTGCTNGCTGCTGTGTACGAT 174 ****************** *** *** ************* ********** **** consensus_7063#0 GCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGAT 233 consensus_7063#1 GCCGTCGTCATCGTCGGACGCGCAGTGCCTTATTAAATCGTACCAAAACACTAAATCGAT 234 ************************************************************ consensus_7063#0 TCACCATGTCTGGCCGATCGCGGCAACCTAAAAGCATGCTAGAAATGCCAACCCGTGTAA 293 consensus_7063#1 TCACCATGTCTGGCCGATCGCGGCAACTTAAAAGCATGCTAGAAATGCCAACCCGTGTAA 294 *************************** ******************************** consensus_7063#0 AAACAAAAGCATAACCAAACACACTCCTCCGAGAGCT-GTTCGCGTGAAGCCCATGAACT 352 consensus_7063#1 AAACAAAAGCATAACCAAACACACTCCTCCGAGAGCTTGTTCGCGTGAAGCCCATGAACT 354 ************************************* ********************** consensus_7063#0 AGCAG-CCGTGCTTT-GGATGGATGTAGCCACCTACACCAAAGCGCTCGCTGTTCCTTCT 410 consensus_7063#1 AGCAGACCGTGCTTNTGGATGGATGTAGCCACCTACACCAAAGCGCTCGCTGTTCCTTCT 414 ***** ******** ******************************************** consensus_7063#0 CAAATGTTCGACTCCGTCCCTGCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGA 470 consensus_7063#1 CAAATGTTCGACTCCGTCCCTGCTGTGCCATGGGGCAAGGGAATTCTTCGAGAAATATGA 474 ************************************************************ consensus_7063#0 AGCGTCGGAGCAACCGATTGAGAAGGA-AGCGAAACAAACGGTAAGGGATGCGGAGCTGT 529 consensus_7063#1 AGCGTCGGAGCAACCGATTGAGAAGGACNGCTAAACAAACGGTAAGGGATGCGGAGCTGT 534 *************************** ** **************************** consensus_7063#0 TTTGCTCGGTAAACGTTGAAGAAA-GCTGCTTCAACGTTGGCCACCTAGAAACGTGTGCC 588 consensus_7063#1 TTAGCTCGGCAACGTCTGAAGACACGCTGCTTCAACGTATGGTACCTA-AAACGTGTGCC 593 ** ****** ** ****** * ************* * ***** *********** consensus_7063#0 TACTTC-GACGGTCTCTATGCAATGGTGTTTAAA-ATGCAACCAAA-CCCGTAAACCACT 645 consensus_7063#1 TACTTNCGACGGTCNCTATGCAATGGTGTATANACATGGAACCAAAACCCGTAAACNATA 653 ***** ******* ************** ** * *** ******* ********* * consensus_7063#0 ACCAACCTCGATAATACAAAACGATCTAGTATTTCTGTAAATCCCAACTACCCGAGCAAA 705 consensus_7063#1 AACCAAAGCCCCCGGATTAANTAACC-ANTAGCACTG---GTCNCTAGCATTATGTCTC- 708 * * * * * ** * * * ** *** ** * * * * consensus_7063#0 CGTAATCAAACACGTTCTGTGTTTAAATACCGTCGAAATCGTTCACACCTTGCATTCGCG 765 consensus_7063#1 -----TTGGACATTTCCCCAGTTAANCCCGNGCGGAACNCCGGTNAGCCTGAGACACCAG 763 * *** * * *** * * *** * *** * * * consensus_7063#0 GTCTTCTGTCCGTCGTCGTACAATACTTCCGTCGTGAACAGATCAACAAATGCAAGAACC 825 consensus_7063#1 GTGCGNTGGTTG--GTAACAACTAANCACAGNCAAANTCCGATCA----------GGACC 811 ** ** * ** * * * * * * ***** * *** consensus_7063#0 GCTTTCCCAATGGATTTCGTTGCCCGTCCGCTTCGCATTCACAAAGTTGCATTAATGTAC 885 consensus_7063#1 -TTTGNNTTACAGGNGCGATCTCTGGCAGNCGACCGACACAATGAATNTCAGNAGNNGAC 870 ** * * * * * * * * ** * * ** * ** consensus_7063#0 CAAAATGCA-ACTGTCCGATAAAAAAATCCCCTACAA--AAGAGGTCGCAGCGCCGCAAC 942 consensus_7063#1 ACNGATGCACANCATGCG-CAAACCTATTACCCAGGGTTAAGATGCCGNCGCGATCCAGC 929 ***** * * ** *** ** ** * **** * ** *** ** * consensus_7063#0 ATAATAAGCACCTAGAGTTGCATTGAAAAAAAAGAAGAAAATATCAATTCAAACCACATG 1002 consensus_7063#1 TACACCA----------------------------------------------------- 936 * * consensus_7063#0 TGTTGCTCGTG 1013 consensus_7063#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||