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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 881 fasta sequence
[TCCCGAGGTTAAAAGCAGCTCCCACCGCCAAACGGACAGTATTCATNAAGTAGATTTGCTACCTTCCCCCCTTTCTTTTCACCCTCCCGTACAGTGTAAAAGCCGGCAAAGTGGCGGACTGTACCGAAAATGAAGTTGATCGACTCCGTCGTACGGAGCTTCAAGGTGGCGAAGGTGTTCCGCGAGAACACCGACAAAATCAACGCCATCGACTTCTCCGCGAACGGGGAGATGCTGATCTCGTGCAGCGAGGACGACCAGATCGTGCTGTACGACTGCGAGAAGGGTACGCAGATCCGGACGGTCAACTCGAAAAAGTACGGCGTGGATCTGATACACTTCACACACGCGAACAACACGGCGATACATAGCTCGACCAANGTGGACGATACGATCCTGGTACCTGAGCCTGCACGACAACAAATATCTGCGGTACTTCCCGGGCCATACGAAGAAGGTCATATTCGCTCAACATCTCCCCGGTGGAGGATACGTTCCTGTCCGGGTCGCTCGATAAGACGCTATACGNGCTGTGGGATCTCCGACTCGCCAAAATGNACAGGGTGTNCATGCACGCCTGAACGGCCGNNCCGCNTACACGGCGTACGATCCGGAGGGGTNTGATCTCATGCCGCCGGGGTNAACCTCGGAAAGCATAAACGCTGTACGAAAGAGCACGACGAACAAGGGACCGCACAGGCGACGNCAAAGCCTGACANCCCGCACGACGGCAATGNGACGGACGGGGCNCNACTNCCCCCGGCACGGGAAAACNAACGAACAGACCNACCGGNNCNNACNCACGGCAACAAGACGACCNNGGGCCCCCCGCAACATACGGCCACCNCCACAGGGACCANGAGATCAACCCACGANCACAC]
[+] EMBL AL929648 [TCCCGAGGTTAAAAGCAGCTCCCACCGCCAAACGGACAGTATTCATNAAGTAGATTTGCTACCTTCCCCCCTTTCTTTTCACCCTCCCGTACAGTGTAAAAGCCGGCAAAGTGGCGGACTGTACCGAAAATGAAGTTGATCGACTCCGTCGTACGGAGCTTCAAGGTGGCGAAGGTGTTCCGCGAGAACACCGACAAAATCAACGCCATCGACTTCTCCGCGAACGGGGAGATGCTGATCTCGTGCAGCGAGGACGACCAGATCGTGCTGTACGACTGCGAGAAGGGTACGCAGATCCGGACGGTCAACTCGAAAAAGTACGGCGTGGATCTGATACACTTCACACACGCGAACAACACGGCGATACATAGCTCGACCAANGTGGACGATACGATCCTGGTACCTGAGCCTGCACGACAACAAATATCTGCGGTACTTCCCGGGCCATACGAAGAAGGTCATATTCGCTCAACATCTCCCCGGTGGAGGATACGTTCCTGTCCGGGTCGCTCGATAAGACGCTATACGNGCTGTGGGATCTCCGACTCGCCAAAATGNACAGGGTGTNCATGCACGCCTGAACGGCCGNNCCGCNTACACGGCGTACGATCCGGAGGGGTNTGATCTCATGCCGCCGGGGTNAACCTCGGAAAGCATAAACGCTGTACGAAAGAGCACGACGAACAAGGGACCGCACAGGCGACGNCAAAGCCTGACANCCCGCACGACGGCAATGNGACGGACGGGGCNCNACTNCCCCCGGCACGGGAAAACNAACGAACAGACCNACCGGNNCNNACNCACGGCAACAAGACGACCNNGGGCCCCCCGCAACATACGGCCACCNCCACAGGGACCANGAGATCAACCCACGANCACAC]
consensusID : consensus_7069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 705 fasta sequence
[CACCGGCATCATCACCGCAAAAGCAAGCTCCCACCGCCAAACGGACAGTATTCAGCAAGTAGATTTGCTACCTTCCCCCCTTTCTTTTCACCCTCCCGTACAGTGTAAAAGCCGGCAAAGTGGCGGACGTACCGAAAATGAAGTTGATCGACTCCGTCGTACGGAGCTTCAAGGTGGCGAAGGTGTTCCGCGAGAACACCGACAAAATCAACGCCATCGACTTCTCCGCGAACGGGGAGATGCTGATCTCGTGCAGCGAGGACGACCAGATCGTGCTGTACGACTGCGAGAAGGGTACGCAGATCCGGACGGTCAACTCGAAAAAGTACGGCGTGGATCTGATACACTTCACACACGCGAACAACACGGCGATACATAGCTCGACCAAGGTGGACGATACGATCCGGTACCTGAGCCTGCACGACAACAAATATCTGCGGTACTTCCCGGGCCATACGAAGAAGGTCATTTCGCTCAACATCTCCCCGGTGGAGGATACGTTCCTGTCCGGGTCGCTCGATAAGACGCTTCGGCTGTGGGATCTCCGCTCGCCCAACTGTCAGGGTGTGATGCAGCTGAACGGCCGGCCGGTAGCGGCGTACGATCCGGAGGGGTTGATCTTTGCCGCCGGCGTCAACTCGGAAAGCATAAAGCTGTACGATTTGCGCTCGTTCGATAAGGGTCCGTTTGTGACGTTTAAGCTGA]
[+] EMBL BX603696 [CACCGGCATCATCACCGCAAAAGCAAGCTCCCACCGCCAAACGGACAGTATTCAGCAAGTAGATTTGCTACCTTCCCCCCTTTCTTTTCACCCTCCCGTACAGTGTAAAAGCCGGCAAAGTGGCGGACGTACCGAAAATGAAGTTGATCGACTCCGTCGTACGGAGCTTCAAGGTGGCGAAGGTGTTCCGCGAGAACACCGACAAAATCAACGCCATCGACTTCTCCGCGAACGGGGAGATGCTGATCTCGTGCAGCGAGGACGACCAGATCGTGCTGTACGACTGCGAGAAGGGTACGCAGATCCGGACGGTCAACTCGAAAAAGTACGGCGTGGATCTGATACACTTCACACACGCGAACAACACGGCGATACATAGCTCGACCAAGGTGGACGATACGATCCGGTACCTGAGCCTGCACGACAACAAATATCTGCGGTACTTCCCGGGCCATACGAAGAAGGTCATTTCGCTCAACATCTCCCCGGTGGAGGATACGT ]
[+] EMBL AGA282334 [ ACCGCAAAAGCAAGCTCCCACCGCCAAACGGACAGTATTCAGCAAGTAGATTTGCTACCTTCCCCCCTTTCTTTTCACCCTCCCGTACAGTGTAAAAGCCGGCAAAGTGGCGGACGTACCGAAAATGAAGTTGATCGACTCCGTCGTACGGAGCTTCAAGGTGGCGAAGGTGTTCCGCGAGAACACCGACAAAATCAACGCCATCGACTTCTCCGCGAACGGGGAGATGCTGATCTCGTGCAGCGAGGACGACCAGATCGTGCTGTACGACTGCGAGAAGGGTACGCANATCCGGACGGTCAACTCGAAAAAGTACGGCGTGGATCTGATACACTTCACACACGCGAACAACACGGCGATACATAGCTCGACCAAGGTGGACGATACGATCCGGTACCTGAGCCTGCACGACAACAAATATCTGGGGTACTTCCCGGGCCATACGAAGAA ]
[+] EMBL BX624732 [ CTTTCTTTTCACCCTCCCGTACAGTGT AAAGCCGGCAAAGTGGCGGACGTACCGAAAATGAAGTTGATCGACTCCGTCGTACGGAGCTTCAAGGTGGCGAAGGTGTTCCGCGAGAACACCGACAAAATCAACGCCATCGACTTCTCCGCGAACGGGGAGATGCTGATCTCGTGCAGCGAGGACGACCAGATCGTGCTGTACGACTGCGAGAAGGGTACGCAGATCCGGACGGTCAACTCGAAAAAGTACGGCGTGGATCTGATACACTTCACACACGCGAACAACACGGCGATACATAGCTCGACCAAGGTGGACGATACGATCCGGTACCTGAGCCTGCACGACAACAAATATCTGCGGTACTTCCCGGGCCACACGAAGAAGGTCATTTCGCTCAACATCTCCCCGGTGGAGGATACGTTCCTGTCCGGGTCGCTCGATAAGACGCTTCGGCTGTGGGATCTCCGCTCGCCCAACTGTCAGGGTGTGATGCAGCTGAACGGCCGGCCGGTAGCGGCGTACGATCCGGAGGGGTTGATCTTTGCCGCCGGCGTCAACTCGGAAAGCATAAAGCTGTACGATTTGCGCTCGTTCGATAAGGGTCCGTTTGTGACGTTTAAGCTGA]
consensusID : consensus_7069#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 652 fasta sequence
[CTGCTGTATCGTTTCGGTCCAAAAAAGCTATCGCTAGCAGTGTCCTGGATTGAGGTTGTTTTGATGACAAGATGTTTCTATAACTACACTCACTTAATAGAATCACCTTTTACAAAAAAAGCAATATCCCGAATTATTCCTCGCCCGTCGGTAACCAGAATGCCATGTTGGTGCAGGCAGACGCAAGCATCATAAACTTCGGATTGAACTGGACACACTGCACCGGGCCGGGATGGTCACCATTTAAGACGCAAATTTTGTACACCGTGTCCGCGTTCCACACGTACACCCGGCCGTCCGTACTGTCGGAAAAGATGAACTGCGAATCGGGGCTAAACGATGCTTCGATGGGAATTCCCTTGATGTTGAGATGTCCCGTAAATGTTTGCAGCGGGGTCCCATGGAACGCGTCAATTAACCGAATGATTGATCCGTTCGTACTGATCAAAATGGTTTTACCGTCCCGGGAAAACTTGAGCCCCGTCCAGTCACATTCCTTCTCCTGATTCAGCTTAAACGTCACAAACGGACCCTTATCGAACGAGCGCAAATCGTACAGCTTTATGCTTTCCGAGTTGACGCCGGCGGCAAAGATCAACCCCTCCGGATCGTACGCCGCTACCGCCGGCCGTTCAGCTGNACCTCGGGCGAT]
[+] EMBL AGA280714 [CTGCTGTATCGTTTCGGTCCAAAAAAGCTATCGCTAGCAGTGTCCTGGATTGAGGTTGTTTTGATGACAAGATGTTTCTATAACTACACTCACTTAATAGAATCACCTTTTACAAAAAAAGCAATATCCCGAATTATTCCTCGCCCGTCGGTAACCAGAATGCCATGTTGGTGCAGGCAGACGCAAGCATCATAAACTTCGGATTGAACTGGACACACTGCACCGGGCCGGGATGGTCACCATTTAAGACGCAAATTTTGTACACCGTGTCCGCGTTCCACACGTACACCCGGCCGTCCGTACTGTCGGAAAAGATGAACTGCGAATCGGGGCTAAACGATGCTTCGATGGGAATTCCCTTGATGTT ]
[-] EMBL AL933748 [ TAGCCAGAATGCCATGTTGGTGCAGGCAGACGCAAGCATCATAAACTTCGGATTGAACTGCACACACTGCACCGGGCCGGGATGGTCACCATTTAGGACGCAAATTTTGTACCCCGTGTCCGCGTTCCACACGTGCACCCGGCCGTCCGTACTGCCGGAAAAGATGAACTGCGAATCGGGGCTAAACGATGCTTCGATGGGAATTCCCTTGTTGTTGAGATGTCCCGTAAATGTTTGCAGCGGGGTCCCATGGAACGCGTCAATTAACCGAATGATTGATCCGTTCGTACTGATCAAAATGGTTTTACCGTCCCGGGAAAACTTGAGCCCCGTCCAGTCACATTCCTTCTCCTGATTCAGCTTAAACGTCACAAACGGACCCTTATCGAACGAGCGCAAATCGTACAGCTTTATGCTTTCCGAGTTGACGCCGGCGGCAAAGATCAACCCCTCCGGATCGTACGCCGCTACCGCCGGCCGTTCAGCTGNACCTCGGGCGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7069#0 --------TCCCGAGGTTAAAAGCA-GCTCCCACCGCCAAACGGACAGTATTCATNAAGT 51
consensus_7069#1 CACCGGCATCATCACCGCAAAAGCAAGCTCCCACCGCCAAACGGACAGTATTCAGCAAGT 60
consensus_7069#2 ------------------------------------------------------------
consensus_7069#0 AGATTTGCTACCTTCCCCCCTTTCTTTTCACCCTCCCGTACAGTGTAAAAGCCGGCAAAG 111
consensus_7069#1 AGATTTGCTACCTTCCCCCCTTTCTTTTCACCCTCCCGTACAGTGTAAAAGCCGGCAAAG 120
consensus_7069#2 --------------CTGCTGTATCGTTTCGGTCCA----AAAAAGCTATCGCTAGCAGTG 42
* * * ** **** * * * * * ** *** *
consensus_7069#0 TGGCGGACTGTACCGAAAATGAAGTTGATCGACTCCGTCGTACGGAGCTTCAAGGTGGCG 171
consensus_7069#1 TGGCGGAC-GTACCGAAAATGAAGTTGATCGACTCCGTCGTACGGAGCTTCAAGGTGGCG 179
consensus_7069#2 TCCTGGATTGAGGTTGTTTTGATGACAAGATGTTTCTATAACTACACTCACTTAATAG-A 101
* *** * *** * * * * * * * *
consensus_7069#0 AAGGTGTTCCGCGAGAACACCGACAAAATCAACGCCATCGACTTCTCCGCGAACGGGGAG 231
consensus_7069#1 AAGGTGTTCCGCGAGAACACCGACAAAATCAACGCCATCGACTTCTCCGCGAACGGGGAG 239
consensus_7069#2 ATCACCTTTTACAAAAAAAGCAATATCCCGAATTATTCCTCGCCCGTCGGTAACCAGA-- 159
* ** * * ** * * * * ** * * ** *** *
consensus_7069#0 ATGCTGATCTCGTGCAGCGAGGACGACCAGATCGTGCTGTACGACTGCGAGAAGGGTACG 291
consensus_7069#1 ATGCTGATCTCGTGCAGCGAGGACGACCAGATCGTGCTGTACGACTGCGAGAAGGGTACG 299
consensus_7069#2 ATGCCATGTTGGTGCAG-GCAGACGCAAGCATCATAAACTTCGGAT-TGAACTGGACACA 217
**** * ****** * **** *** * * ** * ** ** **
consensus_7069#0 CAGATCCGGACGGTCAACTCGAAAAAGTACGGCGTGGATCTGATACAC----TTCACA-- 345
consensus_7069#1 CAGATCCGGACGGTCAACTCGAAAAAGTACGGCGTGGATCTGATACAC----TTCACA-- 353
consensus_7069#2 CTGCACCGGGCCGGGATGGTCACCATTTAAGACGCAAATTTTGTACACCGTGTCCGCGTT 277
* * **** * * * * * ** * ** ** * ***** * * *
consensus_7069#0 -CACGCGAACAACACGGCGATACATAGC-TCGACCAANGTGGACGATACGATCCTGGTAC 403
consensus_7069#1 -CACGCGAACAACACGGCGATACATAGC-TCGACCAAGGTGGACGATACGATCC-GGTAC 410
consensus_7069#2 CCACACGTACACC-CGGCCGTCCGTACTGTCGGAAAAGATGAAC--TGCGAATC-GGGGC 333
*** ** *** * **** * * ** *** ** ** ** * *** * ** *
consensus_7069#0 CTGAGCCTGCACGACAACAAATATCTGCGGTACT------TCCCG-GGCCATACGAAGAA 456
consensus_7069#1 CTGAGCCTGCACGACAACAAATATCTGCGGTACT------TCCCG-GGCCATACGAAGAA 463
consensus_7069#2 TAAACGATGCTTCGATGGGAATTCCCTTGATGTTGAGATGTCCCGTAAATGTTTGCAGCG 393
* *** *** * * * * ***** * * **
consensus_7069#0 GGTCATATTCGCTCAACATCTCCCCGGTGGAGGATACGTTCCTGTCCGGGTCGCTCGATA 516
consensus_7069#1 GGTCAT-TTCGCTCAACATCTCCCCGGTGGAGGATACGTTCCTGTCCGGGTCGCTCGATA 522
consensus_7069#2 GGGTCCCATGGAACG-CGTCAATTAACCGAATGATTGAT--CCGTTCGTACTGATCAAAA 450
** * * * * ** * * *** * * ** ** * ** * *
consensus_7069#0 AGACGCTATACGNGCTGTGGGATCTCCGACTCGCCAAAATGNACAGGGTGTNC--ATGCA 574
consensus_7069#1 AGACGCTTC---GGCTGTGGGATCTCCG-CTCGCCCAACTGT-CAGGGTGTG---ATGCA 574
consensus_7069#2 TGGTTTTACCGTCCCGGGAAAACTTGAGCCCCGTCCAGTCACATTCCTTCTCCTGATTCA 510
* * * * * * * * ** * * * * ** **
consensus_7069#0 CGCCTGAACGGCCGNNCCGCNTACACGGCGTACGATCCGGAGGGGTNTGATCTCATGCCG 634
consensus_7069#1 G--CTGAACGGCCGGCCGGTA---GCGGCGTACGATCCGGAGGGGTT-GATCTT-TGCCG 627
consensus_7069#2 G-CTTAAACGTCACAAACGGACCCTTATCGAACGAGCGCAAATCGTACAGCTTTATGCTT 569
* **** * * ** **** * * ** * ***
consensus_7069#0 CCGGGGTNAACCTCGGA---AAGCATAAACGCTGTACGAAA-GAGCACGACGAACAAGGG 690
consensus_7069#1 CCGGCGTCAAC-TCGGA---AAGCATAAA-GCTGTACGATTTGCGCTCGTTCGATAAGGG 682
consensus_7069#2 TCCGAGTTGACGCCGGCGGCAAAGATCAA-CCCCTCCGGATCGTACGCCGCTACCGCCGG 628
* * ** ** *** ** ** ** * * ** * * * **
consensus_7069#0 ACCGCACAGGCGACGNCAAAGCCTGACANCCCGCACGACGGCAATGNGACGGACGGGGCN 750
consensus_7069#1 TCCGTTT--GTGACGTTTAAGC-TGA---------------------------------- 705
consensus_7069#2 -CCGTTCAGCTGNACCTCGGGC--GAT--------------------------------- 652
*** * ** **
consensus_7069#0 CNACTNCCCCCGGCACGGGAAAACNAACGAACAGACCNACCGGNNCNNACNCACGGCAAC 810
consensus_7069#1 ------------------------------------------------------------
consensus_7069#2 ------------------------------------------------------------
consensus_7069#0 AAGACGACCNNGGGCCCCCCGCAACATACGGCCACCNCCACAGGGACCANGAGATCAACC 870
consensus_7069#1 ------------------------------------------------------------
consensus_7069#2 ------------------------------------------------------------
consensus_7069#0 CACGANCACAC 881
consensus_7069#1 -----------
consensus_7069#2 -----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||