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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7071#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 717 fasta sequence
[CCGGCACAATCTGTCCCTGTTCAGTTTACTGTTTTTCGTGCATTATTTTCCGTAAAGTGTAGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGAGTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAAGATTGCGCACCGCGAGCAAATCCAGCTCGTGGTCGATCTGGACGATGTGGCCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTCAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAGGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCGAACGATACGCGGGACGCCCGGAACGCCATTCCGATGGAGCTGATCAAG-CGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTC-GATCCGGGACGTGAAGGCGGACAGCATCGGCAAGCT--AGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAACCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCC-GGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGT-GCCCGTCGGAGGACTGCCGCGTGAACAAGGCGGGCGG]
[+] EMBL BM598248 [CCGGCACAATCTGTCCCTGTTCAGTTTACTGTTTTTCGTGCATTATTTTCCGTAAAGTGTAGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGAGTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAAGATTGCGCACCGCGAGCAGATCCAGCTCGTGGTCGATCTGGACGATGTGGCCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTTAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAAGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCAAACGATACGCGGGACGCCCGGAACGCCATCCCGATGGAGCTGATCAAGCCGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTCGGATCAGGGACGTGAAGGCGGACAGCATCGGCAGCCTTGGGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAGCCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACG ]
[+] EMBL BM606491 [ ccgCAATCTGTCCCTGTTCAGTTTACTGTTTTTCGTGCATTATTTTCCGTAAAGTGTAGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGAGTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAAGATTGCGCACCGCGAGCAGATCCAGCTCGTGGTCGATCTGGACGATGTGGCCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTTAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAAGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCAAACGATACGCGGGACGCCCGGAACGCCATCCCGATGGAGCTGATCAAG CGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTC GATCAGGGACGTGAAGGCGGACAGCATCGGCAAGCT GGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAGCCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCC GGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGT GCCCGTCGGA ]
[+] EMBL BM580652 [ ccgGTTTACTGTTGTTCGTGCATTATTTTCCGTAAAGTGTAGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGAGTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAAGATTGCGCACCGCGAGCAAATCCAGCTCGTGGTCGATCTGGACGATGTGGCCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTCAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAGGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCGAACGATACGCGGGACGCCCGGAACGCCATTCCGATGGAGCTGATCAAG CGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTC GATCCGGGACGTGAAGGCGGACAGCATCGGCAAGCT AGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAACCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCC GGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGT GCCCGTCGGAGGACTGCCGCGTGAACAAGGCGGGCGG]
[+] EMBL BM603383 [ ccggTTCGTGCATTATTTTCCGTAAAGTGTAGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGAGTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAAGATTGCGCACCGCGAGCAAATCCAGCTCGTGGTCGATCTGG GATGTGGCCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTCAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAGGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCGAACGATACGCGGGACGCCCGGAACGCCATTCCGATGGAGCTGATCAAG CGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTC GATCCGGGACGTGAAGGCGGACAGCATCGGCAAGCT AGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAACCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCCGGGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGTGGCCCGTCGGAGGACT ]
[+] EMBL BM595447 [ ccgGCATTATTTTCCGTAAAGTGTAGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGAGTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAAGATTGCGCACCGCGAGCAAATCCAGCTCGTGGTCGATCTGGACGATGTGGCCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTCAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAGGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCGAACGATACGCGGGACGCCCGGAACGCCATTCCGATGGAGCTGATCAAG CGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTC GATCCGGGACGTGAAGGCGGACAGCATCGGCAAGCT AGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAACCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCC GGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGT GCCCGTCGGA ]
consensusID : consensus_7071#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTTAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAAGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCAAACGATACGCGGGACGCCCGGAACGCCATCCCGATGGAGCTGATCAAGCGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTCGATCAGGGACGTGAAGGCGGACAGCATCGGCAAGCTGGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAGCCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCCGGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGTGCCCGTCGGAGGACTGCCGCGTGAACAAGGCGGGCGGCCGGCTGTACCTGCAGACGCGCGGCTCCAAGTTTGTCAAGTTCCAGGAGATTAAGATCCAGGAGCACAGCGATCAGGGTGCCGGTGGGCCACATTCCCCGTTCGCTGACGGATAATGTGCCGGGGCGAGACGACACGCTGCGCCCCAGCCG]
[+] EMBL BM590744 [CCGCCCACGCGTCCGCCCACGCGTCCGCAGCTACAAGGACGAGCTGGCGGAAGCGATGCAGGTTAACTCGCGGCGCTACGTGAAGCTGTTCTCGGACGCCGTGTTCGAGCTGCTGCCCTCGTACAAAGAGCGGGAGGTGACGAACAAGGACACGCTCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCAAACGATACGCGGGACGCCCGGAACGCCATCCCGATGGAGCTGATCAAGCGGTACGACGTGTACTTCAAGGCGCCGAGCATGGCGAAAGCGGTCTCGATCAGGGACGTGAAGGCGGACAGCATCGGCAAGCTGGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAGCCGATGATGACGGTCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCCGGTCACGTCGATGAGCTTCAAGCCGGCGATCGAGTGCCCGTCGGAGGACTGCCGCGTGAACAAGGCGGGCGGCCGGCTGTACCTGCAGACGCGCGGCTCCAAGTTTGTCAAGTTCCAGGAGATTAAGATCCAGGAGCACAGCGATCAGGGTGCCGGTGGGCCACATTCCCCGTTCGCTGACGGATAATGTGCCGGGGCGAGACGACACGCTGCGCCCCAGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7071#0 CCGGCACAATCTGTCCCTGTTCAGTTTACTGTTTTTCGTGCATTATTTTCCGTAAAGTGT 60
consensus_7071#1 ------------------------------------------------------------
consensus_7071#0 AGCAAAAATGCAGCGTGATTACGCCAAAGATAAAGAAACGATCAAATCCTTCCTGGCGGA 120
consensus_7071#1 ------------------------------------------------------------
consensus_7071#0 GTTTTATCGCGAGGAAGACGATGGCAAGAAGAACTTCGTGTACGCCCGCCAGCTGACAAA 180
consensus_7071#1 ------------------------------------------------------------
consensus_7071#0 GATTGCGCACCGCGAGCAAATCCAGCTCGTG-GTCGATCTGGACGATGTGGCCAGCTACA 239
consensus_7071#1 ----------------------CCGCCCACGCGTCCGCCCACGCG---TCCGCAGCTACA 35
* ** * * *** * ** * ********
consensus_7071#0 AGGACGAGCTGGCGGAAGCGATGCAGGTCAACTCGCGGCGCTACGTGAAGCTGTTCTCGG 299
consensus_7071#1 AGGACGAGCTGGCGGAAGCGATGCAGGTTAACTCGCGGCGCTACGTGAAGCTGTTCTCGG 95
**************************** *******************************
consensus_7071#0 ACGCCGTGTTCGAGCTGCTGCCCTCGTACAAGGAGCGGGAGGTGACGAACAAGGACACGC 359
consensus_7071#1 ACGCCGTGTTCGAGCTGCTGCCCTCGTACAAAGAGCGGGAGGTGACGAACAAGGACACGC 155
******************************* ****************************
consensus_7071#0 TCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCGAACGATA 419
consensus_7071#1 TCGACATCTTCATCGAGCATCGGCTGCTGATGCAGGGCCGGCTGCACGGGCCAAACGATA 215
**************************************************** *******
consensus_7071#0 CGCGGGACGCCCGGAACGCCATTCCGATGGAGCTGATCAAGCGGTACGACGTGTACTTCA 479
consensus_7071#1 CGCGGGACGCCCGGAACGCCATCCCGATGGAGCTGATCAAGCGGTACGACGTGTACTTCA 275
********************** *************************************
consensus_7071#0 AGGCGCCGAGCATGGCGAAAGCGGTCTCGATCCGGGACGTGAAGGCGGACAGCATCGGCA 539
consensus_7071#1 AGGCGCCGAGCATGGCGAAAGCGGTCTCGATCAGGGACGTGAAGGCGGACAGCATCGGCA 335
******************************** ***************************
consensus_7071#0 AGCTAGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAACCGATGATGACGG 599
consensus_7071#1 AGCTGGTGGCGGTGCGCGGCATCGTGACGCGCTGCACCGAGGTGAAGCCGATGATGACGG 395
**** ***************************************** *************
consensus_7071#0 TCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCCGGTCACGTCGATGA 659
consensus_7071#1 TCGCGACGTACACGTGCGATCGGTGCGGCTCGGAAACGTACCAGCCGGTCACGTCGATGA 455
************************************************************
consensus_7071#0 GCTTCAAGCCGGCGATCGAGTGCCCGTCGGAGGACTGCCGCGTGAACAAGGCGGGCGG-- 717
consensus_7071#1 GCTTCAAGCCGGCGATCGAGTGCCCGTCGGAGGACTGCCGCGTGAACAAGGCGGGCGGCC 515
**********************************************************
consensus_7071#0 ------------------------------------------------------------
consensus_7071#1 GGCTGTACCTGCAGACGCGCGGCTCCAAGTTTGTCAAGTTCCAGGAGATTAAGATCCAGG 575
consensus_7071#0 ------------------------------------------------------------
consensus_7071#1 AGCACAGCGATCAGGGTGCCGGTGGGCCACATTCCCCGTTCGCTGACGGATAATGTGCCG 635
consensus_7071#0 -----------------------------
consensus_7071#1 GGGCGAGACGACACGCTGCGCCCCAGCCG 664
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||