These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7083#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1682 fasta sequence [TGGTATTCAACCCCCGGCAAAAGTAAATAATTGTTGTGCGTGGACTGGATTGGTGCAGAAATTTGGTCTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCCAATCTCGACTTTTCTGAAGTGGCCAATTGGAGCATCCACCAAAAACATTACGCCGAATTTGCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTACCATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAAAATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCTCGAGTTTTTGCTCAACACTTGCAAAATTCTCGTCATTGGTGCTGGAGGTCTGGGATGCGAACTGTTGAAGGATCTGGCTCTGATGGGTATCCGTGATATTCACGTAATCGATATGGATACGATCGAGCTTTCCAATCTGAACCGGCAGTTTCTGTTTCGAAGGACGGACATCGGCAAATCGAAGGCACAATGTGCGGCCGCATTCATCAGTGCACGGGTGCCGGGGTGCGTTGTGACGCCTCACTTTCGCAAAATTCAGGACTTTGATTCTGCGTTCTATCGGCAGTTTCACATAATTGTTTGCGGGCTGGATTCGATCGTAGCTCGCCGGTGGATCAACGGGATGATGATATCGATGCTGGAGTACGAAGAAGACGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGGAA-CGAA-GATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCGACTGCACCCTGGATCTGTTTCCACCGCAAGTGAATTATCCACTTTGCACCATCGCCAACACACCCCGGCTGCCGGAACACTGCATCGAGTACGTGAAGATTATCCAGTGGCCGAA-GAAA-CTCCCTTCGGGGTAGATGTTGCCCTCGATGGTGACGATCCGCAGCACGTCTCCT-GGGTGTACGAGAAAGCGCAGGAACGAGCCAACAGTTTCAACATCACCGGATTATCATACCGGCTCGTGCAGGGCGTGTTGAAAAATATTATCCCGGCCGTGGCCAGCACCAATGCGGTAATTGCGGCCGCCTGTGCCACGGAGGTGTTCAAGATTGCTTCCAGCTGCTGTGAACCGTCGAACAATTACATGGTGTTCAATGACGTGGATGGCATCTACACTTATACGTACGAAGCGGAAAAGCGGTCCGATTGCTTGGCATGTAGCCAGGTGCCGAGACCGGTGGACATCAAGGATCCTAATGGAATGACGCTGCAGGATCTGATTCAGCTGTTGTGCGAAAACCCTGAGTTTCAAATGAAAAGTCCAGGACTGACCGCCGTGCTGGAAGGGAAAAACAAAACCCTGTACATGGGTACAGTCAAAAGCATTGAGGAGGCAACGAAGGGAAATCTAACGATGTCACTCAGCGAGCTCGGACTGAAGGATGGTCAAGAAATAATGGTAGCCGATATCACCACACCGAATACGATCCTTATTAAGCTTAAATTTCAACCCAACGAGGTAGAAATGTCATAAATAGTGCAGGGAAGCTCTTTATAAAGGTCAATATGCAAATGAAGCGATGAATTTGATTTTGGAATAAAAATAGATTGTTACACGATTTAAAAAA] [+] EMBL CNS08OLE [TGGTATTCAACCCCCGGCAAAAGTAAATAATTGTTGTGCGTGGACTGGATTGGTGCAGAAATTTGGTCTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCCAATCTCGACTTTTCTGAAGTGGCCAATTGGAGCATCCACCAAAAACATTACGCCGAATTTGCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTACCATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAAAATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCT ] [+] EMBL CNS090PB [ TTGGTGC GAAATTTGGTCTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCCAATCTCGACTTTTCTGAAGTGGTCAATTGGAGCATCCACCAAAAACATTACGCCGAATTTGCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTACCATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAAAATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCTCGAGTTTTTGCTCAACACTTGCAAAATTCTCGTCATTGGTGCTGGAGGTCTGGGATGCGAACTGTTGAAGGATCTGGCTCTGATGGGTATCCGTGATATTCACGTAATCGATATGGATACGATCGAGCTTTCCAATCTGAACCGGCAGTTTCTGTTTCGAAGGACGGACATCGGCAAATCGAAGGCACAATGTGCGGCCGCATTCATCAGTGCACGGGTGCCGGGGTGCGTTGTGACGCCTCACTTTCGCAAAATTCAGGACTTTGATTCTGCGTTCTATCGGCAGTTTCACATAATTGTTTGCGGGCTGGATTCGATCGTAGCTCGCCGGTGGATCAACGGGATGATGATATCGATGCTGGAGTACGAAGAAGACGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGGAA CGAA GATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCGACTGCACCCTGGATCTGTTTCCACCGCAAGTGAATTATCCACTTTGCACCATCGCCAACACACCCCGGCTGCCGGAACACTGCATCGAGTACGTGAAGATTATCCAGTGGCCGAA GAAA CTCCCTTCGGGGTAGATGTTGCCCTCGATGGTGACGATCCGCAGCACGTCTTCTGGGGTGTACGAGAAAG ] [-] EMBL CNS090PC [ CGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGGAACCGAAGGATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCGACTGCACCCTGGATCTGTTTCCACCGCAAGTGAATTATCCACTTTGCACCATCGCCAACACACCCCGGCTGCCGGAACACTGCATCGAGTACGTGAAGATTATCCAGTGGCCGAAGGAAACCTCCTTTCGGGGTAGATGTTGCCCTCGATGGTGACGATCCGCAGCACGTCTCCT GGGTGTACGAGAAAGCGCAGGAACGAGCCAACAGTTTCAACATCACCGGATTATCATACCGGCTCGTGCAGGGCGTGTTGAAAAATATTATCCCGGCCGTGGCCAGCACCAATGCGGTAATTGCGGCCGCCTGTGCCACGGAGGTGTTCAAGATTGCTTCCAGCTGCTGTGAACCGTCGAACAATTACATGGTGTTCAATGACGTGGATGGCATCTACACTTATACGTACGAAGCGGAAAAGCGGTCCGATTGCTTGGCATGTAGCCAGGTGCCGAGACCGGTGGACATCAAGGATCCTAATGGAATGACGCTGCAGGATCTGATTCAGCTGTTGTGCGAAAACCCTGAGTTTCAAATGAAAAGTCCAGGACTGACCGCCGTGCTGGAAGGGAAAAACAAAACCCTGTACATGGGTACAGTCAAAAGCATTGAGGAGGCAACGAAGGGAAATCTAACGATGTCACTCAGCGAGCTCGGACTGAAGGATGGTCAAGAAATAATGGTAGCCGATATCACCACACCGAATACGATCCTTATTAAGCTTAAATTTCAACCCAACGAGGTAGAAATGTCATAAATAGTGCAGGGAAGCTCTTTATAAAGGTCAATATGCAAATGAAGCGATGAATTTGATTTTG ] [-] EMBL CNS08OLF [ GTGCATCGACAAAACCCTGGATCTGTTTCCACCGCAAGTGAATTATCCACTTTGCACCATCGCCAACACACCCCGGCTGCCGGAACACTGCATCGAGTACGTGAAGATTATCCAGTGGCCGAA GGAA AACTCTTCGGGGTAGATGTTGCCCTCGATGGTGACGATCCGCAGCACGTCTCCT GGGTGTACGAGAAAGCGCAGGAACGAGCCAACAGTTTCAACATCACCGGATTATCATACCGGCTCGTGCAGGGCGTGTTGAAAAATATTATCCCGGCCGTGGCCAGCACCAATGCGGTAATTGCGGCCGCCTGTGCCACGGAGGTGTTCAAGATTGCTTCCAGCTGCTGTGAACCGTCGGACAATTACATGGTGTTCAATGACGTGGATGGCATCTACACTTATACGTACGAAGCGGAAAAGCGGTCCGATTGCTTGGCATGTAGCCAGGTGCCGAGACCGGTGGACATCAAGGATCCTAATGGAATGACGCTGCAGGATCTGATTCAGCTGTTGTGCGAAAACCCTGAGTTTCAAATGAAAAGTCCAGGACTGACCGCCGTGCTGGAAGGGAAAAACAAAACCCTGTACATGGGTACAGTCAAAAGCATTGAGGAGGCAACGAAGGGAAATCTAACGATGTCACTCAGCGAGCTCGGACTGAAGGATGGTCAAGAAATAATGGTAGCCGATATCACCACACCGAATACGATCCTTATTAAGCTTAAATTTCAACCCAACGAGGTAGAAATGTCATAAATAGTGCAGGGAAGCTCTTTATAAAGGTCAATATGCAAATGAAGCGATGAATTTGATTTTGGAATAAAAATAGATTGTTACACGATTTAAAAAA] [-] EMBL CNS08QP3 [ ATGGTCAAGAAATAATGGTAGCCGATATCCCCACACCGAATACGATCCTTATTAAGCTTAAATTTCAACCCAACGAGGTAGAAATGTCAT ] consensusID : consensus_7083#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 800 fasta sequence [GTGGACTGGATTGGTGCAGAAATTGGACTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCCAATCTCGACTGTTCTGAAGTGGTCAATTGGAGCATCCACCAAAAACATTACGCCGAATTTGCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTACCATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAAAATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCTCGAGTTTTTGCTCAACACTTGCAAAATTCTCGTCATTGGTGCTGGAGGTCTGGGATGCGAACTGTTGAAGGATCTGGCTCTGATGGGTATCCGTGATATTCACGTAATCGATATGGATACGATCGAGCTTTCCAATCTGAACCGGCAGTTTCTGTTTCGAAGGACGGACATCGGCAAATCGAAGGCACAATGTGCGGCCGCATTCATCAGTGCGTTGTGACGCCTCACTTTTGCAAAATTCAGGACTTTGATTCTGCGTTCTATCGGCAGTTTCACATAATTGTTTGCGGGCTGGATTCGATCGTAGCTCGCCGGTGGATCAACGGGATGATGATATCGATGCTGGAGTACGAAGAAGACGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGGGAACCGAAGGATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCGACTGCACCCTGGATCT] [+] EMBL BX626755 [GTGGACTGGATTGGTGCAGAAATTGGACTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCCAATCTCGACTGTTCTGAAGTGGTCAATTGGAGCATCCACCAAAAACATTACGCCGAATTTGCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTACCATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAAAATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCTCGAGTTTTTGCTCAACACTTGCAAAATTCTCGTCATTGGTGCTGGAGGTCTGGGATGCGAACTGTTGAAGGATCTGGCTCTGATGGGTATCCGTGATATTCACGTAATCGATATGGATACGATCGAGCTTTCCAATCTGAACCGGCAGTTTCTGTTTCGAAGGACGGACATCGGCAAATCGAAGGCACAATGTGCGGCCGCATTCATCAGTGCGTTGTGACGCCTCACTTTTGCAAAATTCAGGACTTTGATTCTGCGTTCTATCGGCAGTTTCACATAATTGTTTGCGGGCTGGATTCGATCGTAGCTCGCCGGTGGATCAACGGGATGATGATATCGATGCTGGAGTACGAAGAAGACGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGGGAACCGAAGGATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCGACTGCACCCTGGATCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7083#0 TGGTATTCAACCCCCGGCAAAAGTAAATAATTGTTGTGCGTGGACTGGATTGGTGCAGAA 60 consensus_7083#1 ---------------------------------------GTGGACTGGATTGGTGCAGAA 21 ********************* consensus_7083#0 ATTTGGTCTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCC 120 consensus_7083#1 ATT-GGACTTTTGCTAGCATTTTGTTATGCTAATTCTCGCTTATTTAGCAACAATCGGCC 80 *** ** ***************************************************** consensus_7083#0 AATCTCGACTTTTCTGAAGTGGCCAATTGGAGCATCCACCAAAAACATTACGCCGAATTT 180 consensus_7083#1 AATCTCGACTGTTCTGAAGTGGTCAATTGGAGCATCCACCAAAAACATTACGCCGAATTT 140 ********** *********** ************************************* consensus_7083#0 GCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTAC 240 consensus_7083#1 GCGGAAATATAAATTCTAGAGAGCGGCTAACACATAAAAAGTAAAGTAATTGTCTGCTAC 200 ************************************************************ consensus_7083#0 CATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAA 300 consensus_7083#1 CATGGAAGTCGCTTCGCCGAACAACGATCATTTGAGCAAACGCTGGAACCATTTGCGGAA 260 ************************************************************ consensus_7083#0 AATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCT 360 consensus_7083#1 AATCCTCGAAAGGTCTGGCCCGCTTTGTCACCCATACTTTGTTGCCTCGTCCGAAACGCT 320 ************************************************************ consensus_7083#0 CGAGTTTTTGCTCAACACTTGCAAAATTCTCGTCATTGGTGCTGGAGGTCTGGGATGCGA 420 consensus_7083#1 CGAGTTTTTGCTCAACACTTGCAAAATTCTCGTCATTGGTGCTGGAGGTCTGGGATGCGA 380 ************************************************************ consensus_7083#0 ACTGTTGAAGGATCTGGCTCTGATGGGTATCCGTGATATTCACGTAATCGATATGGATAC 480 consensus_7083#1 ACTGTTGAAGGATCTGGCTCTGATGGGTATCCGTGATATTCACGTAATCGATATGGATAC 440 ************************************************************ consensus_7083#0 GATCGAGCTTTCCAATCTGAACCGGCAGTTTCTGTTTCGAAGGACGGACATCGGCAAATC 540 consensus_7083#1 GATCGAGCTTTCCAATCTGAACCGGCAGTTTCTGTTTCGAAGGACGGACATCGGCAAATC 500 ************************************************************ consensus_7083#0 GAAGGCACAATGTGCGGCCGCATTCATCAGTGCACGGGTGCCGGGGTGCGTTGTGACGCC 600 consensus_7083#1 GAAGGCACAATGTGCGGCCGCATTCATCAGTGC----------------GTTGTGACGCC 544 ********************************* *********** consensus_7083#0 TCACTTTCGCAAAATTCAGGACTTTGATTCTGCGTTCTATCGGCAGTTTCACATAATTGT 660 consensus_7083#1 TCACTTTTGCAAAATTCAGGACTTTGATTCTGCGTTCTATCGGCAGTTTCACATAATTGT 604 ******* **************************************************** consensus_7083#0 TTGCGGGCTGGATTCGATCGTAGCTCGCCGGTGGATCAACGGGATGATGATATCGATGCT 720 consensus_7083#1 TTGCGGGCTGGATTCGATCGTAGCTCGCCGGTGGATCAACGGGATGATGATATCGATGCT 664 ************************************************************ consensus_7083#0 GGAGTACGAAGAAGACGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGG 780 consensus_7083#1 GGAGTACGAAGAAGACGGCTCGGTCGATGAAACATCCATCATTCCCTTCATCGATGGGGG 724 ************************************************************ consensus_7083#0 AA--CGAAG-ATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCG 837 consensus_7083#1 GAACCGAAGGATTTAAGGGAAACGCACGTGTGATCCTACCCGGCATGACGGCGTGCATCG 784 * ***** ************************************************** consensus_7083#0 ACTGCACCCTGGATCTGTTTCCACCGCAAGTGAATTATCCACTTTGCACCATCGCCAACA 897 consensus_7083#1 ACTGCACCCTGGATCT-------------------------------------------- 800 **************** consensus_7083#0 CACCCCGGCTGCCGGAACACTGCATCGAGTACGTGAAGATTATCCAGTGGCCGAAGAAAC 957 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 TCCCTTCGGGGTAGATGTTGCCCTCGATGGTGACGATCCGCAGCACGTCTCCTGGGTGTA 1017 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 CGAGAAAGCGCAGGAACGAGCCAACAGTTTCAACATCACCGGATTATCATACCGGCTCGT 1077 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 GCAGGGCGTGTTGAAAAATATTATCCCGGCCGTGGCCAGCACCAATGCGGTAATTGCGGC 1137 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 CGCCTGTGCCACGGAGGTGTTCAAGATTGCTTCCAGCTGCTGTGAACCGTCGAACAATTA 1197 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 CATGGTGTTCAATGACGTGGATGGCATCTACACTTATACGTACGAAGCGGAAAAGCGGTC 1257 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 CGATTGCTTGGCATGTAGCCAGGTGCCGAGACCGGTGGACATCAAGGATCCTAATGGAAT 1317 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 GACGCTGCAGGATCTGATTCAGCTGTTGTGCGAAAACCCTGAGTTTCAAATGAAAAGTCC 1377 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 AGGACTGACCGCCGTGCTGGAAGGGAAAAACAAAACCCTGTACATGGGTACAGTCAAAAG 1437 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 CATTGAGGAGGCAACGAAGGGAAATCTAACGATGTCACTCAGCGAGCTCGGACTGAAGGA 1497 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 TGGTCAAGAAATAATGGTAGCCGATATCACCACACCGAATACGATCCTTATTAAGCTTAA 1557 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 ATTTCAACCCAACGAGGTAGAAATGTCATAAATAGTGCAGGGAAGCTCTTTATAAAGGTC 1617 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 AATATGCAAATGAAGCGATGAATTTGATTTTGGAATAAAAATAGATTGTTACACGATTTA 1677 consensus_7083#1 ------------------------------------------------------------ consensus_7083#0 AAAAA 1682 consensus_7083#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||