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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7091#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1281 fasta sequence
[TCTTACACTTTATTTAAAACTTAATAGGAAACACGGTAAAATAACACATAGGACGATACGCGAATACTGGTGTGTGGGTGTGCAACCGTCCGTTGCCCTTGAGCGCTCGGTATCAACTCTCGTGCGGCTCCGGTCCTTGTTCGCCAATACGGGAACACTCAGGCACTCAACACGATCGTGCTTCAATAGTCGACAGGCGAATGTCGACGTCGAGCAGCTGGCGCTGCTGAGGCTGCGTTCCCACAACATCTCCCTTCTTTTAATACAGCAGGTACGGGTCGAACCAACGCGGTGCTTTTCTATCTCTAAAAGAGCGGCGTGGTGGTGGTACTGGCTGTGCTCCTCGATGCGACTCTTCAGGGATGCAATCACGTTCAGGAGGTGGTGATGCTGATGATTGGGACACGGTCCTGTAAGATGATGATTCAGCGGACGACGGTGATAGATTACACGGAGCTGAATCGGACGGTGGCGACAACGACGATGACGATGGAGACGATGCGGACGATGATGACGATGAATCAGGTGACGACGACGGAGGCGTAAGGTTCCACT-CATCCAAGAGAATATGTAGCGGCAAAAGGTGTTGATCACGCTTACTGGCTTGCTGGTTAGAAGGGACCCGACGACGTAGTTGGTTGATATGGCTTCGTATAATCTTATGGTCCTCAGTCATAACACGGTAAATTACATTGCCGCATTTCCGCAATATTCTATCCTGGCTTCCATNTCCATACCGTTATTGCGAGTAAATCTTTGCGAAGACTAATCATTTGGGACGAAATTGCGTCGTAGCTCATCGTTATTGGTTTCTTGCGGTTTAGCACAGGGCGTATAAGCTCTAACACAAGTGCGAATTTGTCGTACCGAACATTACTGTCGCTGGACGCTATCGGATATANGGNACTATGGAGGATTNNGGCGCTGGCGCGNTATGTTGTGTCAAAAACGTTGTCCAGATGCATCCTCCTATCGGCCAGCTACCCACTACGGCTCGGCTGATTCGNGGGCTTAATTGGCGGCCGCCTTGAAANTGGTTATTCCCAACNGANAGGCGGTCCCGCCTTNGAGCCGGATAGNACANTGGANGGNTGGGACACCGGGGCGCGGATTGTTTCAGGTGCCAAGCCGGACCGAATAACANAAAAGTCCGTCATGAGTCGNGGAACANACGANGACTGCNNACNATGATACGAATCACACCAATCGCAAGCACGANGAACACCAGGCTTTNGGGCGCCANNTANCCCTAANNTAGGTATTACNTGGCGGNCNCGATAC]
[-] EMBL BX613149 [TCTTACACTTTATTTAAAACTTAATAGGAAACACGGTAAAATAACACATAGGACGATACGCGAATACTGGTGTGTGGGTGTGCAACCGTCCGTTGCCCTTGAGCGCTCGGTATCAACTCTCGTGCGGCTCCGGTCCTTGTTCGCCAATACGGGAACACTCAGGCACTCAACACGATCGTGCTTCAATAGTCGACAGGCGAATGTCGACGTCGAGCAGCTGGCGCTGCTGAGGCTGCGTTCCCACAACATCTCCCTTCTTTTAATACAGCAGGTACGGGTCGAACCAACGCGGTGCTTTTCTATCTCTAAAAGAGCGGCGTGGTGGTGGTACTGGCTGTGCTCCTCGATGCGACTCTTCAGGGATGCAATCACGTTCAGGAGGTGGTGATGCTGATGATTGGGACACGGTCCTGTAAGATGATGATTCAGCGGACGACGGTGATAGATTACACGGAGCTGAATCGGACGGTGGCGACAACGACGATGACGATGGAGACGATGCGGACGATGATGACGATGAATCAGGTGACGACGACGGAGGCGTAAGGTTCCACT CATCCAAGAGAATATGTAGCGGCAAAAGGTGTTGATCACGCTTACTGGCTTGCTGGTTAGAAGGGACCCGACGACGTAGTTGGTTGATATGGCTTCGTATAATCTTATGGTCCTCAGTCATAACACGGTAAAT ]
[+] EMBL BX617181 [ GAATACTGGTGTGTGGGTGTGCAACCGTCCGTTGCCCTTGAGCGCTCGGTATCAACTCTCGTGCGGCTCCGGTCCTTGTTCGCCAATACGGGAACACTCAGGCACTCAACACGATCGTGCTTCAATAGTCGACAGGCGAATGTCGACGTCGAGCAGCTGGCGCTGCTGAGGCTGCGTTCCCACAACATCTCCCTTCTTTTAATACAGCAGGTACGGGTCGAACCAACGCGGTGCTTTTCTATCTCTAAAAGAGCGGCGTGGTGGTGGTACTGGCTGTGCTCCTCGATGCGACTCTTCAGGGATGCAATCACGTTCAGGAGGTGGTGATGCTGATGATTGGGACACGGTCCTGTAAGATGATGATTCAGCGGACGACGGTGATAGATTACACGGAGCTGAATCGGACGGTGGCGACAACGACGATGACGATGGAGACGATGCGGACGATGATGACGATGAATCAGGTGACGACGACGGAGGCGT ]
[-] EMBL BX610643 [ TCGAGCAGCTGGCGCTGCTGAGGCTGCGTTCCCACAACATCTCCCTTCTTTTAATACAGCAGGTACGGGTCGAACCAACGCGGTGCTTTTCTATCTCTAAAAGAGCGGCGTGGTGGTGGTACCGGCTGTGCTCCTCGATGCGAATCTTCAGGGATGCAATCACGTTCAGGAGGTGGTGATGCTGATGATTGGGACACGGTCCTGTAAGATGATGATTCAGCGGACGACGGTGATAGATTACACGGAGCTGAATCGGACGGTGGCGACAACGACGATGACGATGGAGACGATGAGGACGATGATGACGATGAATCAGGTGACGACGACGGAGGCGTAAGGTTCCACT CATCCAAGAGAATATGTAGCGGCAAAAGGTGTTGATCACGCTTACTGGATTGCTGGTTAGAAGGGACCCGACGACGTAGTTGGTTGATATGGCTTCGTATAATCTTATGGTCCTCAGTCATAACACGGTACATTACATTGCCG ]
[+] EMBL AL934512 [ GTTCCACTACATCCAAGAGAATATGTAGCGGCAAAAGGTGTTGATCACGCTTACTGGCTTGCTGGTTAGAAGGGACCCGACGACGTAGTTGGTTGATATGGCTTCGTATAATCTTATGGTCCTCAGTCATAACACGGTAAATTACATTGCCGCATTTCCGCAATATTCTATCCTGGCTTCCATNTCCATACCGTTATTGCGAGTAAATCTTTGCGAAGACTAATCATTTGGGACGAAATTGCGTCGTAGCTCATCGTTATTGGTTTCTTGCGGTTTAGCACAGGGCGTATAAGCTCTAACACAAGTGCGAATTTGTCGTACCGAACATTACTGTCGCTGGACGCTATCGGATATANGGNACTATGGAGGATTNNGGCGCTGGCGCGNTATGTTGTGTCAAAAACGTTGTCCAGATGCATCCTCCTATCGGCCAGCTACCCACTACGGCTCGGCTGATTCGNGGGCTTAATTGGCGGCCGCCTTGAAANTGGTTATTCCCAACNGANAGGCGGTCCCGCCTTNGAGCCGGATAGNACANTGGANGGNTGGGACACCGGGGCGCGGATTGTTTCAGGTGCCAAGCCGGACCGAATAACANAAAAGTCCGTCATGAGTCGNGGAACANACGANGACTGCNNACNATGATACGAATCACACCAATCGCAAGCACGANGAACACCAGGCTTTNGGGCGCCANNTANCCCTAANNTAGGTATTACNTGGCGGNCNCGATAC]
consensusID : consensus_7091#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence
[ATNGCCGAGGTTATGTGTGGGTGTGCAACGTCCGTTGCCTTGAGCGCTCGGTATCAACTCTCGTGCGGCTCCGGTCTTGTTCGCCAATACGGGAACACTCAGGCACTCAACACGATCGTGCTTCAATAGTCGACAGGCGAATGTCGACGTCGAGCAGCTGGCGCTGCTGAGGCTGCGTTCCCACAACATCTCCCTTCTTTTAATACAGCAGGTACGGGTCGAACCAACGCGGTGCTTTTCTATCTCTAAAAGAGCGGCGTGGTGGTGGTACTGGCTGTGCTCCTCNATGCGACTCTTCAGGGATGCAATCACGTTCAGGAGGCTGGTGACTGCTGATGACTTGGGACACGGTCCTGGTAAGACTGATGATTCAGCGGACGACGGTGATAGATTACACGGAGCTGAATCGGNACGCGTGGCGACAACGCA]
[+] EMBL AL931844 [ATNGCCGAGGTTATGTGTGGGTGTGCAACGTCCGTTGCCTTGAGCGCTCGGTATCAACTCTCGTGCGGCTCCGGTCTTGTTCGCCAATACGGGAACACTCAGGCACTCAACACGATCGTGCTTCAATAGTCGACAGGCGAATGTCGACGTCGAGCAGCTGGCGCTGCTGAGGCTGCGTTCCCACAACATCTCCCTTCTTTTAATACAGCAGGTACGGGTCGAACCAACGCGGTGCTTTTCTATCTCTAAAAGAGCGGCGTGGTGGTGGTACTGGCTGTGCTCCTCNATGCGACTCTTCAGGGATGCAATCACGTTCAGGAGGCTGGTGACTGCTGATGACTTGGGACACGGTCCTGGTAAGACTGATGATTCAGCGGACGACGGTGATAGATTACACGGAGCTGAATCGGNACGCGTGGCGACAACGCA]
consensusID : consensus_7091#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 196 fasta sequence
[CGGTGTTCGATTACTCGGAGCTGATTCGGACGGTGGCGACAACGACGTTGTCGATGGCGTCGATGAGGACGCTGATGACGATGTATCAGGTGACGACGACGGAGGCGTAAGGTTCCACTCATCCAAGAGAATATGTCGCGGCAAAAGGTGTTGCTCCCGCTTTCTGGATTGCTGGTTAGAAGGGACCCGCCGACGT]
[-] EMBL BX610644 [CGGTGTTCGATTACTCGGAGCTGATTCGGACGGTGGCGACAACGACGTTGTCGATGGCGTCGATGAGGACGCTGATGACGATGTATCAGGTGACGACGACGGAGGCGTAAGGTTCCACTCATCCAAGAGAATATGTCGCGGCAAAAGGTGTTGCTCCCGCTTTCTGGATTGCTGGTTAGAAGGGACCCGCCGACGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7091#0 TCTTACACTTTATTTAAAACTTAATAGGAAACACGGTAAAATAACACATAGGACGATACG 60
consensus_7091#1 -------------------------------------------------------ATNGC 5
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 CGAATACTGGTGTGTGGGTGTGCAACCGTCCGTTGCCCTTGAGCGCTCGGTATCAACTCT 120
consensus_7091#1 CGAGG--TTATGTGTGGGTGTGCAAC-GTCCGTTGCC-TTGAGCGCTCGGTATCAACTCT 61
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 CGTGCGGCTCCGGTCCTTGTTCGCCAATACGGGAACACTCAGGCACTCAACACGATCGTG 180
consensus_7091#1 CGTGCGGCTCCGGTC-TTGTTCGCCAATACGGGAACACTCAGGCACTCAACACGATCGTG 120
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 CTTCAATAGTCGACAGGCGAATGTCGACGTCGAGCAGCTGGCGCTGCTGAGGCTGCGTTC 240
consensus_7091#1 CTTCAATAGTCGACAGGCGAATGTCGACGTCGAGCAGCTGGCGCTGCTGAGGCTGCGTTC 180
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 CCACAACATCTCCCTTCTTTTAATACAGCAGGTACGGGTCGAACCAACGCGGTGCTTTTC 300
consensus_7091#1 CCACAACATCTCCCTTCTTTTAATACAGCAGGTACGGGTCGAACCAACGCGGTGCTTTTC 240
consensus_7091#2 -------------------------------------------------CGGTGTTCGAT 11
***** *
consensus_7091#0 TATCTCTAAAAGAGCGGCGTGGTGGTGGTACTGGCTGTGCTCCTCGATGCGACTCTTCAG 360
consensus_7091#1 TATCTCTAAAAGAGCGGCGTGGTGGTGGTACTGGCTGTGCTCCTCNATGCGACTCTTCAG 300
consensus_7091#2 TACTCGGAGCTGATTCGGACGGTGGCGACAACGACGTTG----TCGATGGCGTCGATGAG 67
** * ** * ***** * * * * ** ** *** * **
consensus_7091#0 GGATGCAATCACGTTCAGGAGG-TGGTGA-TGCTGATGA-TTGGGACACGGTCCTG-TAA 416
consensus_7091#1 GGATGCAATCACGTTCAGGAGGCTGGTGACTGCTGATGACTTGGGACACGGTCCTGGTAA 360
consensus_7091#2 GACGCTGATGACGATGTATCAGGTGACGACGACGGAGGCGTAAGGTTCCACTCATCCAAG 127
* ** *** * * ** ** * ** * * ** * ** * *
consensus_7091#0 GA-TGATGATTCAGCGGACGACGGTGATAGATTACACGGAGCTG--AATCGGA-CG-GTG 471
consensus_7091#1 GACTGATGATTCAGCGGACGACGGTGATAGATTACACGGAGCTG--AATCGGNACGCGTG 418
consensus_7091#2 AGAATATGTCGCGGCAAAAGGTGTTGCTCCCGCTTTCTGGATTGCTGGTTAGAAGG-GAC 186
*** * ** * * * ** * * * ** * * * *
consensus_7091#0 GCGACAACGACGATGACGATGGAGACGATGCGGACGATGATGACGATGAATCAGGTGACG 531
consensus_7091#1 GCGACAACGCA------------------------------------------------- 429
consensus_7091#2 CCGCCGACGT-------------------------------------------------- 196
** * ***
consensus_7091#0 ACGACGGAGGCGTAAGGTTCCACTCATCCAAGAGAATATGTAGCGGCAAAAGGTGTTGAT 591
consensus_7091#1 ------------------------------------------------------------
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 CACGCTTACTGGCTTGCTGGTTAGAAGGGACCCGACGACGTAGTTGGTTGATATGGCTTC 651
consensus_7091#1 ------------------------------------------------------------
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 GTATAATCTTATGGTCCTCAGTCATAACACGGTAAATTACATTGCCGCATTTCCGCAATA 711
consensus_7091#1 ------------------------------------------------------------
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 TTCTATCCTGGCTTCCATNTCCATACCGTTATTGCGAGTAAATCTTTGCGAAGACTAATC 771
consensus_7091#1 ------------------------------------------------------------
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 ATTTGGGACGAAATTGCGTCGTAGCTCATCGTTATTGGTTTCTTGCGGTTTAGCACAGGG 831
consensus_7091#1 ------------------------------------------------------------
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 CGTATAAGCTCTAACACAAGTGCGAATTTGTCGTACCGAACATTACTGTCGCTGGACGCT 891
consensus_7091#1 ------------------------------------------------------------
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 ATCGGATATANGGNACTATGGAGGATTNNGGCGCTGGCGCGNTATGTTGTGTCAAAAACG 951
consensus_7091#1 ------------------------------------------------------------
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 TTGTCCAGATGCATCCTCCTATCGGCCAGCTACCCACTACGGCTCGGCTGATTCGNGGGC 1011
consensus_7091#1 ------------------------------------------------------------
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 TTAATTGGCGGCCGCCTTGAAANTGGTTATTCCCAACNGANAGGCGGTCCCGCCTTNGAG 1071
consensus_7091#1 ------------------------------------------------------------
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 CCGGATAGNACANTGGANGGNTGGGACACCGGGGCGCGGATTGTTTCAGGTGCCAAGCCG 1131
consensus_7091#1 ------------------------------------------------------------
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 GACCGAATAACANAAAAGTCCGTCATGAGTCGNGGAACANACGANGACTGCNNACNATGA 1191
consensus_7091#1 ------------------------------------------------------------
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 TACGAATCACACCAATCGCAAGCACGANGAACACCAGGCTTTNGGGCGCCANNTANCCCT 1251
consensus_7091#1 ------------------------------------------------------------
consensus_7091#2 ------------------------------------------------------------
consensus_7091#0 AANNTAGGTATTACNTGGCGGNCNCGATAC 1281
consensus_7091#1 ------------------------------
consensus_7091#2 ------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||