These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7095#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1179 fasta sequence [TAGGGAGCTCACAGCGCTTCCCGGTTCGCCCATCCTTTTTTAACATACGCTCCGGTTTTTGTTTTTTAGGTCACGAGTGTGAGATTGACATTCAGCGGACAATTCAGATGGTGCGCTCCCAGCGTTCCGGCATGGTGCAGACGGAAGCTCAATACAAGTTCGTCTACTTCGCCGTCCAGCACTACATCCAGACGCTGCTGCAGCGGAAGCAGGCCGAGCAGCAGAGCCTGCAGGTGGGCCGCGAGTACACC-AACATTAAGTACGTCGACGAAATCTATGTCTAAAGTAACTGTTTAAGCGCTTTCGAAACTAACTTAGCGTTACGCTGTCCCCCCCCTTCTACGTACCTCCGCCTGACCCACGTCTGTCCGTCTGTGTAGCCGTAACCTAGAGCGCGTGTGTTTGCATATCCCCCATCCGATCCCACCCAAAACCCCTCCCTCCCTGAAAGAACGAGCTTCTACGTTTGCACCATAAACGGTTAAAAGAACGGTCTTCACGACGGCCCCTGTTGTTGTTGTTGTTGTTGCTGCTACCTTGCTCTGCTCGCTCGTCGATAATTTCTCTGCCGGGTGGCCATGCTAAACCAGTGCAGAATGTAAGGGCAACAAAGCATTAGGAGACCAGGGAAAGGGATCAAGGGATCAGCTGGAGCGAACGGCATGACGCATAGGGAACGACCAGATCGCGGCCAGATCACAGCGGAAAAGAAGCGCGGGGGAATATAGTTGTAAATTGTT-GTACATTGTTCGTGCTACGCAAAATTCGTTCTCGTGTTGCGTGTGTTGGCTTGTACACCATCGTTGTGATATTACTGCTACTAC--TATAGTAATTTAAATGGCTTTCCTTCTTTTTTATCTTTATCCATCGCACTCCTGCTCTGTATACCTTAGTGTTGCGGATTTGTTTTTGCTTTCCATAACTGATTGCACGATTAAAACAGTGTGTGAGTGTTTAAAGGTAGAACGGGGTAAACCATGTGGTCGCTTGTGTGAGATAGAGATTGAGAAAATGGGGTTGCGTGTTTTGTTTTCTTCTATCTTTCGTTTGGATAAATGCGGCAACTGACGGTAACAAAATCGGAAAGCAAATTAGAATAAACACATTGAAGCCGAGCTGAGCTCTGCAGCAGCACGTTAAATGGTGTACATTAGTGTTGAGATGTACATGTACAATAAA] [+] EMBL CNS09IGJ [TAGGGAGCTCACAGCGCTTCCCGGTTCGCCCATCCTTTTTTAACATACGCTCCGGTTTTTGTTTTTTAGGTCACGAGTGTGAGATTGACATTCAGCGGACAATTCAGATGGTGCGCTCCCAGCGTTCCGGCATGGTGCAGACGGAAGCTCAATACAAGTTCGTCTACTTCGCCGTCCAGCACTACATCCAGACGCTGCTGCAGCGGAAGCAGGCCGAGCAGCAGAGCCTGCAGGTGGGCCGCGAGTACACC AACATTAAGTACGTCGACGAAATCTATGTCTAAAGTAACTGTTTAAGCGCTTTCGAAACTAACTTAGCGTTACGCTGTCCCCCCCCTTCTACGTACCTCCGCCTGACCCACGTCTGTCCGTCTGTGTAGCCGTAACCTAGAGCGCGTGTGTTTGCATATCCCCCATCCGATCCCACCCAAAACCCCTCCCTCCCTGAAAGAACGAGCTTCTACGTTTGCACCATAAACGGTTAAAAGAACGGTCTTCACGACGGCCCCTGTTGTTGTTGTTGTTGTTGCTGCTACCTTGCTCTGCTCGCTCGTCGATAATTTCTCTGCCGGGTGGCCATGCTAAACCAGTGCAGAATGTAAGGGCAACAAAGCATTAGGAGACCAGGGAAAGGGATCAAGGGATCAGCTGGAGCGAACGGCATGACGCATAGGGAACGACCAGATCGCGGCCAGATCACAGCGGAAAAGAAGCGCGGGGGAATATAGTTGTAAATTGTT GTACATTGTTCGTGCTACGCAAAATTCGTTCTCGTGTTGCGTGTGTTGGCTTGTACACCATCGTTGTGATATTACTGCTACTAC TATAGTAATTTAAATGGCTTTCCTTCTTTTTTATCTTTATCCATCGCACTCCTGCTCTGTATACCTTAGTGTTGCGGATTTGTTTTTGCTTTCCATAACTGATTGCACGATTAAAACAGTGTGTGAGAAAAAAAAGGTAGAACGGGGTAAACCATGTGGTCGCTTGTGTGA ] [+] EMBL CNS09O2N [ TCACAGCGCTTCCCGGTTCGCACATCCTTTTTTAACATACGCTCCGGTTTTTGTTTTTTAGGTCACGAGTGTGAGATTGACATTCAGCGGACAATTCAGATGGTGCGCTCCCAGCGTTCCGGCATGGTGCAGACGGAAGCTCAATACAAGTTCGTCTACTTCGCCGTCCAGCACTACATCCAGACGCTGCTGCAGCGGAAGCAGGCCGAGCAGCAGAGCCTGCAGGTGGGCCGCGAGTACACC AACATTAAGTACGTCGACGAAATCTATGTCTAAAGTAACTGTTTAAGCGCTTTCGAAACTAACTTAGCGTTACGCTGTCCCCCCCCTTCTACGTACCTCCGCCTGACCCACGTCTGTCCGTCTGTGTAGCCGTAACCTAGAGCGCGTGTGTTTGCATATCCCCCATCCGATCCCACCCAAAACCCCTCCCTCCCTGAAAGAACGAGCTTCTACGTTTGCACCATAAACGGTTAAAAGAACGGTCTTCACGACGGCCCCTGTTGTTGTTGTTGTTGTTGCTGCTACCTTGCTCTGCTCGCTCGTCGATAATTTCTCTGCCGGGTGGCCATGCTAAACCAGTGCAGAATGTAAGGGCAACAAAGCATTAGGAGACCAGGGAAAGGGATCAAGGGATCAGCTGGAGCGAACGGCATGACGCATAGGGAACGACCAGATCGCGGCCAGATCACAGCGGAAAAGAAGCGCGGGGGAATATAGTTGTAAATTGTTAGTACAaagt ] [-] EMBL CNS09IGK [ GCGAGTACACCAAACATTAAGTACGTCGACGAAATCTATGTCTAAAGTAACTGTTTAAGCGCTTTCGAAACTAACTTAGCGTTACGCTGTCCCCCCCCTTCTACGTACCTCCGCCTGACCCACGTCTGTCCGTCTGTGTAGCCGTAACCTAGAGCGCGTGTGTTTGCATATCCCCCATCCGATCCCACCCAAAACCCCTCCCTCCCTGAAAGAACGAGCTTCTACGTTTGCACCATAAACGGTTAAAAGAACGGTCTTCACGACGGCCCCTGTTGTTGTTGTTGTTGTTGCTGCTACCTTGCTCTGCTCGCTCGTCGATAATTTCTCTGCCGGGTGGCCATGCTAAACCAGTGCAGAATGTAAGGGCAACAAAGCATTAGGAGACCAGGGAAAGGGATCAAGGGATCAGCTGGAGCGAACGGCATGACGCATAGGGAACGACCAGATCGCGGCCAGATCACAGCGGAAAAGAAGCGCGGGGGAATATAGTTGTAAATTGTT GTACATTGTTCGTG TACGCAAAATTCGTTCTCGTGTTGCGTGTGTTGGCTTGTACACCATCGTTGTGATATTACTGCTACTAC TATAGTAATTTAAATGGCTTTCCTTCTTTTTTATCTTTATCCATCGCACTCCTGCTCTGTATACCTTAGTGTTGCGGATTTGTTTTTGCTTTCCATAACTGATTGCACGATTAAAACAGTGTGTGAGTGTTTAAAGGTAGAACGGGGTAAACCATGTGGTCGCTTGTGTGAGATAGAGATTGAGAAAATGGGGTTGCGTGTTTTGTTTTCTTCTATCTTTCGTTTGGATAAATGCGGCAACTGACGGTAACAAAATCGGAAAGCAAATTAGAATAAACACATTGAAGCCGAGCTGAGCTCTGCAGCAGCACGTTAAATGGTGTACATTAGTGTTGAGATGTACATGTACAATAAA] [+] EMBL BM641029 [ CCGTGCTAAAACAGTGCAGAATGTAAGGGCAACAAAGCATTAGGCGACCAGGGAAAGGGATCAAGGGATCAGCTGGAGCGAACGGCATGACGCATAGGGAACGACCAGATCGCGGCCAGAACACAGCGGAAAAGAAGCGCGGGGGAATATAGTTGTAAATTGTT GTACATTGTTCGTGCTACGCAAAATTCGTTCTCGTGTTGCGTGTGTTGGCTTGTACACCATCGTTGTGATATTACTGCTACTACTATATAGTAATTTAAATGGCTTTCCTTCTTTTTTATCTCCATCCATCGCACTCCTGCTCTGTATACCTTAGTGTTGCGGATTTGTTTTTGCTTTCCATAACTGATTGCACGATTAAAACAGTGTGTGAGTGTTTAAAGGT ] consensusID : consensus_7095#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 479 fasta sequence [ATCGCCGAGGTNNATCGGGCGGACGGGCACGTTTATCGTGATCGATATGA-TTTGGATCAGATTCTGCGTCAAGGTCACGAGTGTGAGATTGACATTCAGCGGACAATTCAGATGGTGCGCTCGCAGCGTTCCGGCATGGTGCAGACGGAAGCTCAATACAAGTTCGTCTACTTCGCCGTCCAGCACTACATCCAGACGCTGCTGCAGCGGAAGCAGGCCGAGCAGCAGAGCCTGCAGGTGGGCCGCGAGTACACCAACATTAAGTACGTCGACGAAATCTATGTCTAAAGTAACTGTTTAAGCGCTTTCGAAACTAACTTAGCGTTACGCTGTCCCCCCCTTCTACGTACCTCCGCCTGACCCACGTCTGTCCGTCTGTGTAGCCGTAACCTAGAGCGCGTGTGTTTGCATATCCCCCATCCGACCCCA-CCAAAA-CCCTCCCTCCCTGAAAGAACGAGCTTCTACGTTGACAAAACGGT] [+] EMBL AL931936 [ATCGCCGAGGTNNATCGGGCGGACGGGCACGTTTATCGTGATCGATATGA TTTGGATCAGATTCTGCGTCAAGGTCACGAGTGTGAGATTGACATTCAGCGGACAATTCAGATGGTGCGCTCGCAGCGTTCCGGCATGGTGCAGACGGAAGCTCAATACAAGTTCGTCTACTTCGCCGTCCAGCACTACATCCAGACGCTGCTGCAGCGGAAGCAGGCCGAGCAGCAGAGCCTGCAGGTGGGCCGCGAGTACACCAACATTAAGTACGTCGACGAAATCTATGTCTAAAGTAACTGTTTAAGCGCTTTCGAAACTAACTTAGCGTTACGCTGTCCCCCCCTTCTACGTACCTCCGCCTGACCCACGTCTGTCCGTCTGTGTAGCCGTAACCTAGAGCGCGTGTGTTTGCATATCCCCCATCCGACCCCA CCAAAA CCCTCCCTCCCTGAAAGAACGAGCTTCTACGTTGACAAAACGGT] [+] EMBL BX618948 [ CGGGCACGTTTATCGTGATCGATATGATTTTGGATCAGATTCTGCGTCAAGGTCACGAGTGTGAGATTGACATTCAGCGGACAATTCAGATGGTGCGCTCGCAGCGTTCCGGCATGGTGCAGACGGAAGCTCAATACAAGTTCGTCTACTTCGCCGTCCAGCACTACATCCAGACGCTGCTGCAGCGGAAGCAGGCCGAGCAGCAGAGCCTGCAGGTGGGCCGCGAGTACACCAACATTAAGTACGTCGACGAAATCTATGTCTAAAGTAACTGTTTAAGCGCTTTCGAAACTAACTTAGCGTTACGCTGTCCCCCCCTTCTACGTACCTCCGCCTGACCCACGTCTGTCCGTCTGTGTAGCCGTAACCTAGAGCGCGTGTGTTTGCATATCCCCCATCCGACCCCACCCAAAACCCCTCCCTCCCTGAAAGAACGAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7095#0 ---TAGGGAGCTCACAGCGCTTCCCGGTTCGCCCATCCTTTTT--TAACATACGCTCCGG 55 consensus_7095#1 ATCGCCGAGGTNNATCGGGCGGACGGGCACGTTTATCGTGATCGATATGATTTGGATCAG 60 * * * * ** * ** ** *** * * ** ** * * * consensus_7095#0 TTTTTGTTTTTTAGGTCACGAGTGTGAGATTGACATTCAGCGGACAATTCAGATGGTGCG 115 consensus_7095#1 ATTCTGCGTCA-AGGTCACGAGTGTGAGATTGACATTCAGCGGACAATTCAGATGGTGCG 119 ** ** * ************************************************ consensus_7095#0 CTCCCAGCGTTCCGGCATGGTGCAGACGGAAGCTCAATACAAGTTCGTCTACTTCGCCGT 175 consensus_7095#1 CTCGCAGCGTTCCGGCATGGTGCAGACGGAAGCTCAATACAAGTTCGTCTACTTCGCCGT 179 *** ******************************************************** consensus_7095#0 CCAGCACTACATCCAGACGCTGCTGCAGCGGAAGCAGGCCGAGCAGCAGAGCCTGCAGGT 235 consensus_7095#1 CCAGCACTACATCCAGACGCTGCTGCAGCGGAAGCAGGCCGAGCAGCAGAGCCTGCAGGT 239 ************************************************************ consensus_7095#0 GGGCCGCGAGTACACCAACATTAAGTACGTCGACGAAATCTATGTCTAAAGTAACTGTTT 295 consensus_7095#1 GGGCCGCGAGTACACCAACATTAAGTACGTCGACGAAATCTATGTCTAAAGTAACTGTTT 299 ************************************************************ consensus_7095#0 AAGCGCTTTCGAAACTAACTTAGCGTTACGCTGTCCCCCCCCTTCTACGTACCTCCGCCT 355 consensus_7095#1 AAGCGCTTTCGAAACTAACTTAGCGTTACGCTGTCCCCCCC-TTCTACGTACCTCCGCCT 358 ***************************************** ****************** consensus_7095#0 GACCCACGTCTGTCCGTCTGTGTAGCCGTAACCTAGAGCGCGTGTGTTTGCATATCCCCC 415 consensus_7095#1 GACCCACGTCTGTCCGTCTGTGTAGCCGTAACCTAGAGCGCGTGTGTTTGCATATCCCCC 418 ************************************************************ consensus_7095#0 ATCCGATCCCACCCAAAACCCCTCCCTCCCTGAAAGAACGAGCTTCTACGTTTGCACCAT 475 consensus_7095#1 ATCCGACCCCACC--AAAACCCTCCCTCCCTGAAAGAACGAGCTTCTACGTTGACA---- 472 ****** ****** *** ********************************* ** consensus_7095#0 AAACGGTTAAAAGAACGGTCTTCACGACGGCCCCTGTTGTTGTTGTTGTTGTTGCTGCTA 535 consensus_7095#1 AAACGGT----------------------------------------------------- 479 ******* consensus_7095#0 CCTTGCTCTGCTCGCTCGTCGATAATTTCTCTGCCGGGTGGCCATGCTAAACCAGTGCAG 595 consensus_7095#1 ------------------------------------------------------------ consensus_7095#0 AATGTAAGGGCAACAAAGCATTAGGAGACCAGGGAAAGGGATCAAGGGATCAGCTGGAGC 655 consensus_7095#1 ------------------------------------------------------------ consensus_7095#0 GAACGGCATGACGCATAGGGAACGACCAGATCGCGGCCAGATCACAGCGGAAAAGAAGCG 715 consensus_7095#1 ------------------------------------------------------------ consensus_7095#0 CGGGGGAATATAGTTGTAAATTGTTGTACATTGTTCGTGCTACGCAAAATTCGTTCTCGT 775 consensus_7095#1 ------------------------------------------------------------ consensus_7095#0 GTTGCGTGTGTTGGCTTGTACACCATCGTTGTGATATTACTGCTACTACTATAGTAATTT 835 consensus_7095#1 ------------------------------------------------------------ consensus_7095#0 AAATGGCTTTCCTTCTTTTTTATCTTTATCCATCGCACTCCTGCTCTGTATACCTTAGTG 895 consensus_7095#1 ------------------------------------------------------------ consensus_7095#0 TTGCGGATTTGTTTTTGCTTTCCATAACTGATTGCACGATTAAAACAGTGTGTGAGTGTT 955 consensus_7095#1 ------------------------------------------------------------ consensus_7095#0 TAAAGGTAGAACGGGGTAAACCATGTGGTCGCTTGTGTGAGATAGAGATTGAGAAAATGG 1015 consensus_7095#1 ------------------------------------------------------------ consensus_7095#0 GGTTGCGTGTTTTGTTTTCTTCTATCTTTCGTTTGGATAAATGCGGCAACTGACGGTAAC 1075 consensus_7095#1 ------------------------------------------------------------ consensus_7095#0 AAAATCGGAAAGCAAATTAGAATAAACACATTGAAGCCGAGCTGAGCTCTGCAGCAGCAC 1135 consensus_7095#1 ------------------------------------------------------------ consensus_7095#0 GTTAAATGGTGTACATTAGTGTTGAGATGTACATGTACAATAAA 1179 consensus_7095#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||