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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2028 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGGTCAAAACTTTGTGGACGTATTTCTCTTGATTTTATTTCTTCACAATTGTGGCTTAATTCGTACACAGCTAGCACCGTCTACATTCGTCTCGAACGAAACGCTTCTTCCGTGATAGAGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTGTGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATCCAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGGGAAGAAACCTAAAGTGTTGAAGACTGCTGTGGAGGATTCGTACGTGCCAAGAGGAGCAGATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCTTATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACGTCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCTGAACTTGTTACGACAAGTTAAAATAGGCACAGGGAACGGAACAGAGGACTTTTCGCCCGTGCTGGAGTAGAACGGTGAGTGGGACCGTCCGATCGATTGAATACTATCTCCGTTTGCTGTGTCTGGAATACGGAAGCAAGGTTCCGGGGCTGTGGTGACACCGATATAGTGTGAACCCCCGCGTATTGCGCCTCCCTGCGTGGCTGGCGGCGAAATAGCTCATCCGACGCTTGTATGGGCAACATCGTCTTACGGAGTCGCATCCTGGAGAGTATGAACAACTTCGAGCACGCTGAGGATGCTGACGGCGATTTTGAGCTGCTGCGCGAACGCTTGTTCAACGATATCCAGCTAAATGACGAAGAGGAAAGCACCTATGGGTCCGGCGGCGAGTTTGCCTCGATTTTGCGCCATCTCATACGCAGTGGCGAGATAATGGTGCTCAACTACGAAAGCTACATGCATCATCCACTGCCGGTAATCAAGAAGAAGCCAAATTTGGAGAAGCTAAAGCACAATGACCTTTACCATTCGACAAAGGCTGCAGCCGGGGTGAAGGAAATGCCGGCTGCGACTGGAGGCGGGGCGGCGGCGTCCGCTTCTAGCGCCCCATTTTCGCTGATGAGCATGGTCACCCAACGACAGCACGGGCTGGGCAAGCGGCAGGGATCGTTCGAGCCGAGCGAAATGTGCCGTATTACGAACCACTTTCGGCCGAACACGTTCACCGAGACGGTGAGCGCTTGCGATACGAAGGTGTTCTGTGGCAAGTTTACCAGCAACGGCGATCGGTTCGTCACGGCCAGCCAGGACACTTGGGTGCGTGTGTACGACTCGACCAGCAGCCAGTACAAGCTGTTGCGTCTGCTCGATACGAAGCACGTGTCGTGGTCGATCCTGGACATGGATTTCAGCCCGGACGGACAGTCGTTCGTGTACAGTACCTGGGCCGACGCATTGTTTATTTCTAGCATGGACCGCGGCATGTCGGATAGCATACATTCGCTTTATCTGAGCCCAAACAATCAGAAGCTGGGAGTGTTCACCGTATGCTATTCGGGGTGCGGCAAACACATCTTGTGCGGCGCCAACGATGGCACACTGTACGCTTACGATCTGGAGGCAAATCAACGCACGCTGATGGCGCCCGTTGCGCGTGTCGATATGGACGTCAATACGGTCGGCTTTGTAGAAGAGTTGTCGAACATATTCTACAGTGGAAGTGACGATGGTGTTATCAAGTTATGGGATCGTCGCTGCATTGACGAATCGAACCCGCAACCGGTTGGCCGATTGATTGGCCATTTTGACGGTATCACGTACATCGATTCGCGGAACGATGGTCGCTACATCATTTCGAACTCCAAGGACCAGAGCATTAAGCTGTGGGATCTGCGCAAAATGACACCTTCTTATGCCCGACCGGAACACGTGTACAGCAACTGGGACTACCGATGGGACGATGTACCCAGGCGCTTCTTCAACGTTA]
[+] EMBL BM626355 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCAAAACTTTGTGGACGTATTTCTCTTGATTTTATTTCTTCACAATTGTGGCTTAATTCGTACACAGCTAGCACCGTCTACATTCGTCTCGAACGAAACGCTTCTTCCGTGATAGAGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTGTGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATCCAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGGGAAGAAACCTAAAGTGTTGAAGACTGCTGTGGAGGATTCGTACGTGCCAAGAGGAGCAGATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCTTATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACGTCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCTGAACTTGTTACGACAAGTTAAAATAGGCACAGGGAACGGAACAGAGGACTTTTCGCCCGTGCTGGAGTAGAACGGTGAGTGGGACCGTCCGATCGATTGAATACTATCTCCGTTTGCTGTGTCTGGAATACGGAAGCAAGGT ]
[+] EMBL BM624510 [ CCGGTCAAAACTTTGTGGACGTATTTCTCTTGATTTTATTTCTTCACAATTGTGGCTTAATTCGTACACAGCTAGCACCGTCTACATTCGTCTCGAACGAAACGCTTCTTCCGTGATAGAGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTGTGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATCCAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGGGAAGAAACCTAAAGTGTTGAAGACTGCTGTGGAGGATTCGTACGTGCCAAGAGGAGCAGATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCTTATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACGTCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCTGAACTTGTTACGACAAGTTAAAATAGGCACAGGGAACGGAACAGAGGACTTTTCGCCCGTGCTGGAGTAGAACGGTGAGTGGGACCGTCCGATCGATTGAATACTATCTCCGTTTGCTGTGTCTGGAATACGGAAGCAAGGTTCCGGGGCTGTGGTGACACCGATATAGTGT ]
[+] EMBL BM579343 [ ccgGTCTGGAATACGGAAGCAAGGTTCCGGGGCTGTGGTGACACCGATATAGTGTGAACCCCCGCGTATTGCGCCTCCCTGCGTGGCTGGCGGCGAAATAGCTCATCCGACGCTTGTATGGGCAACATCGTCTTACGGAGTCGCATCCTGGAGAGTATGAACAACTTCGAGCACGCTGAGGATGCTGACGGCGATTTTGAGCTGCTGCGCGAACGCTTGTTCAACGATATCCAGCTAAATGACGAAGAGGAAAGCACCTATGGGTCCGGCGGCGAGTTTGCCTCGATTTTGCGCCATCTCATACGCAGTGGCGAGATAATGGTGCTCAACTACGAAAGCTACATGCATCATCCACTGCCGGTAATCAAGAAGAAGCCAAATTTGGAGAAGCTAAAGCACAATGACCTTTACCATTCGACAAAGGCTGCAGCCGGGGTGAAGGAAATGCCGGCTGCGACTGGA ]
[+] EMBL BM627775 [ CCGGCGGCGAGTTTGCCTCGATTTTGCGCCATCTCATACGCAGTGGCGAGATAATGGTGCTCAACTACGAAAGCTACATGCATCACCCACTGCCGGTAATCAAGAAGAAGCCAAATTTGGAGAAGCTAAAGCACAATGACCTTTATCATTCGACCAAGGCTGCAGCCGGGGTGAAGGAAATGCCGGCTGCGAGTGCAGGCGGGGCGGCGGCGTCCGCTTCTAGCGCCCCATTTTCGCTGATGAGCATGGTCACCCAACGACAGCACGGGCTGGGCAAGCGGCAGGGATCGTTCGAGCCGAGCGAAATGTGCCGTATTACGAACCACTTTCGGCCGAACACGTTCACCGAGACGGTGAGCGCTTGCGATACGAAGGTGTTCTGTGGCAAGTTTACCAGCAACGGCGATCGGTTCGTCACGGCCAGCCAGGACACTTGGGTGCGTGTGTACGACTCGACCAGCAGCCAGTACAAGCTGTTGCGTCTGCTCGATACGAAGCACGTGTCGTGGTCGATCCTGGACATGGATTTCAGCCCGGACGGACAGTCGTTCGTGTACAGTACCTGGGCCGACGCATTGTTTATTTCTAGCATGGACCGCGGCATGTCGGATAGCATACATTCGCTTTATCTGAGCCCAAACAATCAGAAGCTGGGAGTGTTCACCGTATGCTATTCGGGGTGCGGCAAACACATC ]
[+] EMBL BM602936 [ ccgCGGTTCGTCACTGCCAGCCAGGACACTTGGGTGCGTGTGTACGACTCGACCAGCAGCCAGTACAAACTGTTGCGTCTGCTCGATACGAAGCACGTGTCGTGGTCGATCCTGGACATGGATTTCAGCCCGGACGGACAGTCGTTCGTGTACAGTACCTGGGCGGACGCATTGTTTATTTCTAGCATGGACCGCGGCATGTCGGATAGCATACATTCGCTTTATCTGAGCCCAAACAATCAGAAGCTGGGAGTGTTCACCGTATGCTATTCGGGGTGCGGCAAACACATCTTGTGCGGCGCCAACGATGGCACACTGTACGCTTACGATCTGGAGGCAAATCAACGCACGCTGATGGCGCCCGTTGCGCGTGTCGATATGGACGTCAATACGGTCGGCTTTGTAGAAGAGTTGTCGAACATATTCTACAGTGGAAGTGACGATGGTGTTATCAAGTTATGGGATCGTCGCTGCATTGACGAATCGAACCCGCAACCGGTTGGCCGATTGATTGGCCATTTTGACGGTATCACGTACATCGATTCGCGGAACGATGGTCGCTACATCATTTCGAACTCCAAGGACCAGAGCATTAAGCTGTGGGATCTGCGCAAAATGACACCTTCTTATGCCCGACCGGAACACGTGTACAGCAACTGGGACTACCGATGGGACGATGTACCCAGGCGCTTCTTCAACGTTA]
consensusID : consensus_7099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence
[CCGAACTTTGTGGACGTATTTCTCTTGATTTTATTTCTTCACAATTGTGGCTTAATTCGTACACAACTAGCACCGTCTACATTCGTCTCGAACGAAACGCTTCTTCCGTGATAGGGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTGTGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATCCAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGGGAAGAAACCTAAAGTGTTGGAAATTGCTGTGTGAGGATTCGTACGTGCCAAGAGGAGCAGATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCTTATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACGTCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCTGAACTTGTTACGACAAGTTGAAGTAGGCACAGGGAACGGAACAGAGGTACCGACAAACACACCGTTGTGTCATTCGGCGAACGAAACACGGTCCCATTGCCTCATATTGCTCAACCCGTCTTCTTTTTTTTTGCAGGACTTTTCGCCCGTGCTGGAGTAGAACGGTGAGTGGGGACCGTCCGATCGATT]
[+] EMBL BM623238 [CCGAACTTTGTGGACGTATTTCTCTTGATTTTATTTCTTCACAATTGTGGCTTAATTCGTACACAACTAGCACCGTCTACATTCGTCTCGAACGAAACGCTTCTTCCGTGATAGGGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTGTGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATCCAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGGGAAGAAACCTAAAGTGTTGGAAATTGCTGTGTGAGGATTCGTACGTGCCAAGAGGAGCAGATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCTTATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACGTCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCTGAACTTGTTACGACAAGTTGAAGTAGGCACAGGGAACGGAACAGAGGTACCGACAAACACACCGTTGTGTCATTCGGCGAACGAAACACGGTCCCATTGCCTCATATTGCTCAACCCGTCTTCTTTTTTTTTGCAGGACTTTTCGCCCGTGCTGGAGTAGAACGGTGAGTGGGGACCGTCCGATCGATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7099#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTCAAAACTTTGTGGACGTATTTCTCTTGATTT 60
consensus_7099#1 -----------------------------CCGAACTTTGTGGACGTATTTCTCTTGATTT 31
* ****************************
consensus_7099#0 TATTTCTTCACAATTGTGGCTTAATTCGTACACAGCTAGCACCGTCTACATTCGTCTCGA 120
consensus_7099#1 TATTTCTTCACAATTGTGGCTTAATTCGTACACAACTAGCACCGTCTACATTCGTCTCGA 91
********************************** *************************
consensus_7099#0 ACGAAACGCTTCTTCCGTGATAGAGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTG 180
consensus_7099#1 ACGAAACGCTTCTTCCGTGATAGGGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTG 151
*********************** ************************************
consensus_7099#0 TGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATC 240
consensus_7099#1 TGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATC 211
************************************************************
consensus_7099#0 CAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGG 300
consensus_7099#1 CAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGG 271
************************************************************
consensus_7099#0 GAAGAAACCTAAAGTGTTGAAGACTGCTGTG-GAGGATTCGTACGTGCCAAGAGGAGCAG 359
consensus_7099#1 GAAGAAACCTAAAGTGTTGGAAATTGCTGTGTGAGGATTCGTACGTGCCAAGAGGAGCAG 331
******************* * * ******* ****************************
consensus_7099#0 ATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCT 419
consensus_7099#1 ATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCT 391
************************************************************
consensus_7099#0 TATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACG 479
consensus_7099#1 TATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACG 451
************************************************************
consensus_7099#0 TCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCT 539
consensus_7099#1 TCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCT 511
************************************************************
consensus_7099#0 GAACTTGTTACGACAAGTTAAAATAGGCACAGGGAACGGAACAGAGGACTTTTCGCCCGT 599
consensus_7099#1 GAACTTGTTACGACAAGTTGAAGTAGGCACAGGGAACGGAACAGAGGTACCGACAAACAC 571
******************* ** ************************ * *
consensus_7099#0 GCTGGAGTAGAA--CGGTGAGTGGGACC--GTCCGATCGATTGAA--TACTATCTCCGTT 653
consensus_7099#1 ACCGTTGTGTCATTCGGCGAACGAAACACGGTCCCATTGCCTCATATTGCTCAACCCGTC 631
* * ** * *** ** * ** **** ** * * * * ** ****
consensus_7099#0 TGCTGTGTCTGGAATACGGAAGCAAGGTTCCGGGGCTGTGGTGACACCGATATAGTGTGA 713
consensus_7099#1 TTCTTTTTTTT---TGCAGGA-CTTTTCGCCCGTGCTGGAGT-AGAACGGTG-AGTGGGG 685
* ** * * * * * * * * ** * **** ** * * ** * **** *
consensus_7099#0 ACCCCCGCGT--ATTGCGCCTCCCTGCGTGGCTGGCGGCGAAATAGCTCATCCGACGCTT 771
consensus_7099#1 ACCGTCCGATCGATT--------------------------------------------- 700
*** * * ***
consensus_7099#0 GTATGGGCAACATCGTCTTACGGAGTCGCATCCTGGAGAGTATGAACAACTTCGAGCACG 831
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 CTGAGGATGCTGACGGCGATTTTGAGCTGCTGCGCGAACGCTTGTTCAACGATATCCAGC 891
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TAAATGACGAAGAGGAAAGCACCTATGGGTCCGGCGGCGAGTTTGCCTCGATTTTGCGCC 951
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 ATCTCATACGCAGTGGCGAGATAATGGTGCTCAACTACGAAAGCTACATGCATCATCCAC 1011
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TGCCGGTAATCAAGAAGAAGCCAAATTTGGAGAAGCTAAAGCACAATGACCTTTACCATT 1071
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 CGACAAAGGCTGCAGCCGGGGTGAAGGAAATGCCGGCTGCGACTGGAGGCGGGGCGGCGG 1131
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 CGTCCGCTTCTAGCGCCCCATTTTCGCTGATGAGCATGGTCACCCAACGACAGCACGGGC 1191
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TGGGCAAGCGGCAGGGATCGTTCGAGCCGAGCGAAATGTGCCGTATTACGAACCACTTTC 1251
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 GGCCGAACACGTTCACCGAGACGGTGAGCGCTTGCGATACGAAGGTGTTCTGTGGCAAGT 1311
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TTACCAGCAACGGCGATCGGTTCGTCACGGCCAGCCAGGACACTTGGGTGCGTGTGTACG 1371
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 ACTCGACCAGCAGCCAGTACAAGCTGTTGCGTCTGCTCGATACGAAGCACGTGTCGTGGT 1431
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 CGATCCTGGACATGGATTTCAGCCCGGACGGACAGTCGTTCGTGTACAGTACCTGGGCCG 1491
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 ACGCATTGTTTATTTCTAGCATGGACCGCGGCATGTCGGATAGCATACATTCGCTTTATC 1551
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TGAGCCCAAACAATCAGAAGCTGGGAGTGTTCACCGTATGCTATTCGGGGTGCGGCAAAC 1611
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 ACATCTTGTGCGGCGCCAACGATGGCACACTGTACGCTTACGATCTGGAGGCAAATCAAC 1671
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 GCACGCTGATGGCGCCCGTTGCGCGTGTCGATATGGACGTCAATACGGTCGGCTTTGTAG 1731
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 AAGAGTTGTCGAACATATTCTACAGTGGAAGTGACGATGGTGTTATCAAGTTATGGGATC 1791
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 GTCGCTGCATTGACGAATCGAACCCGCAACCGGTTGGCCGATTGATTGGCCATTTTGACG 1851
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 GTATCACGTACATCGATTCGCGGAACGATGGTCGCTACATCATTTCGAACTCCAAGGACC 1911
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 AGAGCATTAAGCTGTGGGATCTGCGCAAAATGACACCTTCTTATGCCCGACCGGAACACG 1971
consensus_7099#1 ------------------------------------------------------------
consensus_7099#0 TGTACAGCAACTGGGACTACCGATGGGACGATGTACCCAGGCGCTTCTTCAACGTTA 2028
consensus_7099#1 ---------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||