These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2028 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTCAAAACTTTGTGGACGTATTTCTCTTGATTTTATTTCTTCACAATTGTGGCTTAATTCGTACACAGCTAGCACCGTCTACATTCGTCTCGAACGAAACGCTTCTTCCGTGATAGAGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTGTGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATCCAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGGGAAGAAACCTAAAGTGTTGAAGACTGCTGTGGAGGATTCGTACGTGCCAAGAGGAGCAGATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCTTATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACGTCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCTGAACTTGTTACGACAAGTTAAAATAGGCACAGGGAACGGAACAGAGGACTTTTCGCCCGTGCTGGAGTAGAACGGTGAGTGGGACCGTCCGATCGATTGAATACTATCTCCGTTTGCTGTGTCTGGAATACGGAAGCAAGGTTCCGGGGCTGTGGTGACACCGATATAGTGTGAACCCCCGCGTATTGCGCCTCCCTGCGTGGCTGGCGGCGAAATAGCTCATCCGACGCTTGTATGGGCAACATCGTCTTACGGAGTCGCATCCTGGAGAGTATGAACAACTTCGAGCACGCTGAGGATGCTGACGGCGATTTTGAGCTGCTGCGCGAACGCTTGTTCAACGATATCCAGCTAAATGACGAAGAGGAAAGCACCTATGGGTCCGGCGGCGAGTTTGCCTCGATTTTGCGCCATCTCATACGCAGTGGCGAGATAATGGTGCTCAACTACGAAAGCTACATGCATCATCCACTGCCGGTAATCAAGAAGAAGCCAAATTTGGAGAAGCTAAAGCACAATGACCTTTACCATTCGACAAAGGCTGCAGCCGGGGTGAAGGAAATGCCGGCTGCGACTGGAGGCGGGGCGGCGGCGTCCGCTTCTAGCGCCCCATTTTCGCTGATGAGCATGGTCACCCAACGACAGCACGGGCTGGGCAAGCGGCAGGGATCGTTCGAGCCGAGCGAAATGTGCCGTATTACGAACCACTTTCGGCCGAACACGTTCACCGAGACGGTGAGCGCTTGCGATACGAAGGTGTTCTGTGGCAAGTTTACCAGCAACGGCGATCGGTTCGTCACGGCCAGCCAGGACACTTGGGTGCGTGTGTACGACTCGACCAGCAGCCAGTACAAGCTGTTGCGTCTGCTCGATACGAAGCACGTGTCGTGGTCGATCCTGGACATGGATTTCAGCCCGGACGGACAGTCGTTCGTGTACAGTACCTGGGCCGACGCATTGTTTATTTCTAGCATGGACCGCGGCATGTCGGATAGCATACATTCGCTTTATCTGAGCCCAAACAATCAGAAGCTGGGAGTGTTCACCGTATGCTATTCGGGGTGCGGCAAACACATCTTGTGCGGCGCCAACGATGGCACACTGTACGCTTACGATCTGGAGGCAAATCAACGCACGCTGATGGCGCCCGTTGCGCGTGTCGATATGGACGTCAATACGGTCGGCTTTGTAGAAGAGTTGTCGAACATATTCTACAGTGGAAGTGACGATGGTGTTATCAAGTTATGGGATCGTCGCTGCATTGACGAATCGAACCCGCAACCGGTTGGCCGATTGATTGGCCATTTTGACGGTATCACGTACATCGATTCGCGGAACGATGGTCGCTACATCATTTCGAACTCCAAGGACCAGAGCATTAAGCTGTGGGATCTGCGCAAAATGACACCTTCTTATGCCCGACCGGAACACGTGTACAGCAACTGGGACTACCGATGGGACGATGTACCCAGGCGCTTCTTCAACGTTA] [+] EMBL BM626355 [CCGCCCACGCGTCCGCCCACGCGTCCGGTCAAAACTTTGTGGACGTATTTCTCTTGATTTTATTTCTTCACAATTGTGGCTTAATTCGTACACAGCTAGCACCGTCTACATTCGTCTCGAACGAAACGCTTCTTCCGTGATAGAGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTGTGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATCCAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGGGAAGAAACCTAAAGTGTTGAAGACTGCTGTGGAGGATTCGTACGTGCCAAGAGGAGCAGATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCTTATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACGTCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCTGAACTTGTTACGACAAGTTAAAATAGGCACAGGGAACGGAACAGAGGACTTTTCGCCCGTGCTGGAGTAGAACGGTGAGTGGGACCGTCCGATCGATTGAATACTATCTCCGTTTGCTGTGTCTGGAATACGGAAGCAAGGT ] [+] EMBL BM624510 [ CCGGTCAAAACTTTGTGGACGTATTTCTCTTGATTTTATTTCTTCACAATTGTGGCTTAATTCGTACACAGCTAGCACCGTCTACATTCGTCTCGAACGAAACGCTTCTTCCGTGATAGAGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTGTGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATCCAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGGGAAGAAACCTAAAGTGTTGAAGACTGCTGTGGAGGATTCGTACGTGCCAAGAGGAGCAGATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCTTATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACGTCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCTGAACTTGTTACGACAAGTTAAAATAGGCACAGGGAACGGAACAGAGGACTTTTCGCCCGTGCTGGAGTAGAACGGTGAGTGGGACCGTCCGATCGATTGAATACTATCTCCGTTTGCTGTGTCTGGAATACGGAAGCAAGGTTCCGGGGCTGTGGTGACACCGATATAGTGT ] [+] EMBL BM579343 [ ccgGTCTGGAATACGGAAGCAAGGTTCCGGGGCTGTGGTGACACCGATATAGTGTGAACCCCCGCGTATTGCGCCTCCCTGCGTGGCTGGCGGCGAAATAGCTCATCCGACGCTTGTATGGGCAACATCGTCTTACGGAGTCGCATCCTGGAGAGTATGAACAACTTCGAGCACGCTGAGGATGCTGACGGCGATTTTGAGCTGCTGCGCGAACGCTTGTTCAACGATATCCAGCTAAATGACGAAGAGGAAAGCACCTATGGGTCCGGCGGCGAGTTTGCCTCGATTTTGCGCCATCTCATACGCAGTGGCGAGATAATGGTGCTCAACTACGAAAGCTACATGCATCATCCACTGCCGGTAATCAAGAAGAAGCCAAATTTGGAGAAGCTAAAGCACAATGACCTTTACCATTCGACAAAGGCTGCAGCCGGGGTGAAGGAAATGCCGGCTGCGACTGGA ] [+] EMBL BM627775 [ CCGGCGGCGAGTTTGCCTCGATTTTGCGCCATCTCATACGCAGTGGCGAGATAATGGTGCTCAACTACGAAAGCTACATGCATCACCCACTGCCGGTAATCAAGAAGAAGCCAAATTTGGAGAAGCTAAAGCACAATGACCTTTATCATTCGACCAAGGCTGCAGCCGGGGTGAAGGAAATGCCGGCTGCGAGTGCAGGCGGGGCGGCGGCGTCCGCTTCTAGCGCCCCATTTTCGCTGATGAGCATGGTCACCCAACGACAGCACGGGCTGGGCAAGCGGCAGGGATCGTTCGAGCCGAGCGAAATGTGCCGTATTACGAACCACTTTCGGCCGAACACGTTCACCGAGACGGTGAGCGCTTGCGATACGAAGGTGTTCTGTGGCAAGTTTACCAGCAACGGCGATCGGTTCGTCACGGCCAGCCAGGACACTTGGGTGCGTGTGTACGACTCGACCAGCAGCCAGTACAAGCTGTTGCGTCTGCTCGATACGAAGCACGTGTCGTGGTCGATCCTGGACATGGATTTCAGCCCGGACGGACAGTCGTTCGTGTACAGTACCTGGGCCGACGCATTGTTTATTTCTAGCATGGACCGCGGCATGTCGGATAGCATACATTCGCTTTATCTGAGCCCAAACAATCAGAAGCTGGGAGTGTTCACCGTATGCTATTCGGGGTGCGGCAAACACATC ] [+] EMBL BM602936 [ ccgCGGTTCGTCACTGCCAGCCAGGACACTTGGGTGCGTGTGTACGACTCGACCAGCAGCCAGTACAAACTGTTGCGTCTGCTCGATACGAAGCACGTGTCGTGGTCGATCCTGGACATGGATTTCAGCCCGGACGGACAGTCGTTCGTGTACAGTACCTGGGCGGACGCATTGTTTATTTCTAGCATGGACCGCGGCATGTCGGATAGCATACATTCGCTTTATCTGAGCCCAAACAATCAGAAGCTGGGAGTGTTCACCGTATGCTATTCGGGGTGCGGCAAACACATCTTGTGCGGCGCCAACGATGGCACACTGTACGCTTACGATCTGGAGGCAAATCAACGCACGCTGATGGCGCCCGTTGCGCGTGTCGATATGGACGTCAATACGGTCGGCTTTGTAGAAGAGTTGTCGAACATATTCTACAGTGGAAGTGACGATGGTGTTATCAAGTTATGGGATCGTCGCTGCATTGACGAATCGAACCCGCAACCGGTTGGCCGATTGATTGGCCATTTTGACGGTATCACGTACATCGATTCGCGGAACGATGGTCGCTACATCATTTCGAACTCCAAGGACCAGAGCATTAAGCTGTGGGATCTGCGCAAAATGACACCTTCTTATGCCCGACCGGAACACGTGTACAGCAACTGGGACTACCGATGGGACGATGTACCCAGGCGCTTCTTCAACGTTA] consensusID : consensus_7099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 700 fasta sequence [CCGAACTTTGTGGACGTATTTCTCTTGATTTTATTTCTTCACAATTGTGGCTTAATTCGTACACAACTAGCACCGTCTACATTCGTCTCGAACGAAACGCTTCTTCCGTGATAGGGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTGTGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATCCAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGGGAAGAAACCTAAAGTGTTGGAAATTGCTGTGTGAGGATTCGTACGTGCCAAGAGGAGCAGATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCTTATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACGTCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCTGAACTTGTTACGACAAGTTGAAGTAGGCACAGGGAACGGAACAGAGGTACCGACAAACACACCGTTGTGTCATTCGGCGAACGAAACACGGTCCCATTGCCTCATATTGCTCAACCCGTCTTCTTTTTTTTTGCAGGACTTTTCGCCCGTGCTGGAGTAGAACGGTGAGTGGGGACCGTCCGATCGATT] [+] EMBL BM623238 [CCGAACTTTGTGGACGTATTTCTCTTGATTTTATTTCTTCACAATTGTGGCTTAATTCGTACACAACTAGCACCGTCTACATTCGTCTCGAACGAAACGCTTCTTCCGTGATAGGGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTGTGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATCCAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGGGAAGAAACCTAAAGTGTTGGAAATTGCTGTGTGAGGATTCGTACGTGCCAAGAGGAGCAGATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCTTATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACGTCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCTGAACTTGTTACGACAAGTTGAAGTAGGCACAGGGAACGGAACAGAGGTACCGACAAACACACCGTTGTGTCATTCGGCGAACGAAACACGGTCCCATTGCCTCATATTGCTCAACCCGTCTTCTTTTTTTTTGCAGGACTTTTCGCCCGTGCTGGAGTAGAACGGTGAGTGGGGACCGTCCGATCGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7099#0 CCGCCCACGCGTCCGCCCACGCGTCCGGTCAAAACTTTGTGGACGTATTTCTCTTGATTT 60 consensus_7099#1 -----------------------------CCGAACTTTGTGGACGTATTTCTCTTGATTT 31 * **************************** consensus_7099#0 TATTTCTTCACAATTGTGGCTTAATTCGTACACAGCTAGCACCGTCTACATTCGTCTCGA 120 consensus_7099#1 TATTTCTTCACAATTGTGGCTTAATTCGTACACAACTAGCACCGTCTACATTCGTCTCGA 91 ********************************** ************************* consensus_7099#0 ACGAAACGCTTCTTCCGTGATAGAGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTG 180 consensus_7099#1 ACGAAACGCTTCTTCCGTGATAGGGAAGGAATGCAGAACGCGTTAATTTGACCTGAATTG 151 *********************** ************************************ consensus_7099#0 TGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATC 240 consensus_7099#1 TGTTCACATTTGCTGTGTTTTTGTGGCTGAAAGCTCACCATTCACATCATACCACTCATC 211 ************************************************************ consensus_7099#0 CAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGG 300 consensus_7099#1 CAGCCTTCGCCAGCACACAGATACGGGTGTGCAAAACAAAGCGAAGAAGAAGGCAGACGG 271 ************************************************************ consensus_7099#0 GAAGAAACCTAAAGTGTTGAAGACTGCTGTG-GAGGATTCGTACGTGCCAAGAGGAGCAG 359 consensus_7099#1 GAAGAAACCTAAAGTGTTGGAAATTGCTGTGTGAGGATTCGTACGTGCCAAGAGGAGCAG 331 ******************* * * ******* **************************** consensus_7099#0 ATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCT 419 consensus_7099#1 ATATCCCGTTGCGAGAAAAAGATATTCATTCTGATAAGCGTCGAAGGAGAGCAGCTTTCT 391 ************************************************************ consensus_7099#0 TATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACG 479 consensus_7099#1 TATCTCGAGCAGCTTTTGGTGCCTACAATCACACAGCGCTCGCGGGGTGGGTCTATTACG 451 ************************************************************ consensus_7099#0 TCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCT 539 consensus_7099#1 TCCTTCGGGCGAAAGCAGCAAGAGCGAGAGGGAGAAACGTCATCATCGCACAAGCTCTCT 511 ************************************************************ consensus_7099#0 GAACTTGTTACGACAAGTTAAAATAGGCACAGGGAACGGAACAGAGGACTTTTCGCCCGT 599 consensus_7099#1 GAACTTGTTACGACAAGTTGAAGTAGGCACAGGGAACGGAACAGAGGTACCGACAAACAC 571 ******************* ** ************************ * * consensus_7099#0 GCTGGAGTAGAA--CGGTGAGTGGGACC--GTCCGATCGATTGAA--TACTATCTCCGTT 653 consensus_7099#1 ACCGTTGTGTCATTCGGCGAACGAAACACGGTCCCATTGCCTCATATTGCTCAACCCGTC 631 * * ** * *** ** * ** **** ** * * * * ** **** consensus_7099#0 TGCTGTGTCTGGAATACGGAAGCAAGGTTCCGGGGCTGTGGTGACACCGATATAGTGTGA 713 consensus_7099#1 TTCTTTTTTTT---TGCAGGA-CTTTTCGCCCGTGCTGGAGT-AGAACGGTG-AGTGGGG 685 * ** * * * * * * * * ** * **** ** * * ** * **** * consensus_7099#0 ACCCCCGCGT--ATTGCGCCTCCCTGCGTGGCTGGCGGCGAAATAGCTCATCCGACGCTT 771 consensus_7099#1 ACCGTCCGATCGATT--------------------------------------------- 700 *** * * *** consensus_7099#0 GTATGGGCAACATCGTCTTACGGAGTCGCATCCTGGAGAGTATGAACAACTTCGAGCACG 831 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 CTGAGGATGCTGACGGCGATTTTGAGCTGCTGCGCGAACGCTTGTTCAACGATATCCAGC 891 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TAAATGACGAAGAGGAAAGCACCTATGGGTCCGGCGGCGAGTTTGCCTCGATTTTGCGCC 951 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 ATCTCATACGCAGTGGCGAGATAATGGTGCTCAACTACGAAAGCTACATGCATCATCCAC 1011 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TGCCGGTAATCAAGAAGAAGCCAAATTTGGAGAAGCTAAAGCACAATGACCTTTACCATT 1071 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 CGACAAAGGCTGCAGCCGGGGTGAAGGAAATGCCGGCTGCGACTGGAGGCGGGGCGGCGG 1131 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 CGTCCGCTTCTAGCGCCCCATTTTCGCTGATGAGCATGGTCACCCAACGACAGCACGGGC 1191 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TGGGCAAGCGGCAGGGATCGTTCGAGCCGAGCGAAATGTGCCGTATTACGAACCACTTTC 1251 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 GGCCGAACACGTTCACCGAGACGGTGAGCGCTTGCGATACGAAGGTGTTCTGTGGCAAGT 1311 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TTACCAGCAACGGCGATCGGTTCGTCACGGCCAGCCAGGACACTTGGGTGCGTGTGTACG 1371 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 ACTCGACCAGCAGCCAGTACAAGCTGTTGCGTCTGCTCGATACGAAGCACGTGTCGTGGT 1431 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 CGATCCTGGACATGGATTTCAGCCCGGACGGACAGTCGTTCGTGTACAGTACCTGGGCCG 1491 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 ACGCATTGTTTATTTCTAGCATGGACCGCGGCATGTCGGATAGCATACATTCGCTTTATC 1551 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TGAGCCCAAACAATCAGAAGCTGGGAGTGTTCACCGTATGCTATTCGGGGTGCGGCAAAC 1611 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 ACATCTTGTGCGGCGCCAACGATGGCACACTGTACGCTTACGATCTGGAGGCAAATCAAC 1671 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 GCACGCTGATGGCGCCCGTTGCGCGTGTCGATATGGACGTCAATACGGTCGGCTTTGTAG 1731 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 AAGAGTTGTCGAACATATTCTACAGTGGAAGTGACGATGGTGTTATCAAGTTATGGGATC 1791 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 GTCGCTGCATTGACGAATCGAACCCGCAACCGGTTGGCCGATTGATTGGCCATTTTGACG 1851 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 GTATCACGTACATCGATTCGCGGAACGATGGTCGCTACATCATTTCGAACTCCAAGGACC 1911 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 AGAGCATTAAGCTGTGGGATCTGCGCAAAATGACACCTTCTTATGCCCGACCGGAACACG 1971 consensus_7099#1 ------------------------------------------------------------ consensus_7099#0 TGTACAGCAACTGGGACTACCGATGGGACGATGTACCCAGGCGCTTCTTCAACGTTA 2028 consensus_7099#1 --------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||