These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7102#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1047 fasta sequence [CCGCTCTGCGCCAGTGCAATACCCCTTAATCTGTTGCCGGCAGCTTCGCAATCGTCCAAGAAAGTTGCGGCAACGCGGAAGTGTAAATTTGGAGTCGTGATAGTTGGGG-AAAAAAACCGTTTCGGCTACTTCCACCACGGTGTGCACGCGACCATAAACCGATCATTCAATCTTCATCGATCATACACTGTCTGTGGAGGCAATCACATCAACCAACCAATCGTACAGTTATATATAGTGAAAGACCCTGAACACTACCGATCTTGCACGCGGCTACAGCACATGCAGGATGTAAAGAGACAGATAGGTGACGCCATATCAGACATTCCGCTG-TTTTTTT-AAGTGTTTTTGGAGGGGTACTGGATGCTGCAAAGGGCAGCCCTAGATTAAGAAAATGAACGGAACGGGCTTAATGTTTCCCACCTTTTTACTGCTGCACAACTACTCGCTCAACTACGGTGACAACAGTGTTGTGAACAGTCCACGACTGCGGACAGATCTTACCGTGTGCTATGGTATCTTCGGCTGCTACACCACGACCGATCCGTGGACGAGTGCCCGCCGCCCGATCGCACTGCTGCCGGAGCCGCCGGAAGAGCTGGACGTGAGCTTTGTGATATTTAATGGGCGCAACCGGTCGTACCCGCAGTACTTGAACAAGTTCCCGAGCTACCTGGACCTGCCGGACTCGATCAGCTCGACCGACATTAACCCGAGGGGCATGATCTACTTCATCACGCACGGCTTTCTGGAGAAGGGGGCCACGAAATGGATTGAAAAAATGATGAACGCGCTGCTGGATATGGACGCCGACTCGACGGTGATTGTTATCGACTGGGGCAAGGGCTCCAATCCACCGTACAATCAGGCGTGCGCTAACATTCGGTTGGTGGGGAACATCGTGGGGCACTTTATATATACGATGATGGGTCAGCTAGGATTGCAGAACCTCGACAACGTGCACATGATAGGTCACTCGCTCGGTTCGCACCTCTCCGGATATACCGGCACGATGCTGCGTGACACCTACAACCTAACGCTTGGTCG] [+] EMBL BM609224 [CCGCTCTGCGCCAGTGCAATACCCCTTAATCTGTTGCCGGCAGCTTCGCAATCGTCCAAGAAAGTTGCGGCAACGCGGAAGTGTAAATTTGGAGTCGTGATAGTTGGGGAAAAAAAACCGTTTCGGCTACTTCCACCACGGTGTGCACGCGACCATAAACCGATCATTCAATCTTCATCGATCATACACTGTCTGTGGAGGCAATCACATCAACCAACCAATCGTACAGTTATATATAGTGAAAGACCCTGAACACTACCGATCTTGCACGCGGCTACAGCACATGCAGGATGTAAAGAGACAGATAGGTGACGCCATATCAGACATTCCGCTGTTTTTTTT AAGTGTTTTTGGAGGGGTACTGGATGCTGCAAAGGGCAGCCCTAGATTAAGAAGATGAACGGAACGGGCTTAATGTTTCCCACCTTTTTACTGCTGCACAACTACTCGCTCAACTACGGTGACAACAGTGTTGTGAACAGTCCACGACTGCGGACAGATCTTACCGTGTGCTATGGTATCTTCGGCTGCTACACCACGACCGATCCGTGGACGAGTGCCCGCCGCCCGATCGCACTGCTGCCGGAGCCGCCGGAAGAGCTGGACGTGAGCTTTGTGATATTTAATGGGCGCAACCGGTCGTACCCGCAGTACTTGAACAAGTTCCCGAGCTACCTGGACCTGCCGGACTCGAT ] [+] EMBL BM610637 [CCGCTCTGCGCCAGTGCAATACCCCTTAATCTGTTGCCGGCAGCTTCGCAATCGTCCAAGAAAGTTGCGGCAACGCGGAAGTGTAAATTTGGAGTCGTGATAGTTGGGG AAAAAAACCGTTTCGGCTACTTCCACCACGGTGTGCACGCGACCATAAACCGATCATTCAATCTTCATCGATCATACACTGTCTGTGGAGGCATTCACATCAACCAACCAATCGTACAGTTATATATAGTGAAAGACCCTGAACACTACCGATCTTGCACGCGGCTACAGCACATGCAGGATGTAAAGAGACAGATAGGTTACGCCATATCAGACATTCCGCTG TTTTTTT AAGTGATTTTGGAGGGGTACTGGATGCTGCAAAGGGCAGCCCTAGATTAAGAAAATGAACGGAACGGGCTTAATGTTTCCCACCTTTTTACTGCTGCACAACTACTCGCTCAACTACGGTGACAACAGTGTTGTGAACAGTCCACGACTGCGGACAGATCTTACCGTGTGCTATGGTATCTTCGGCTGCTACACCACGACCGATCCGTGGACGAGTGCCCGCCGCCCGATCGCACTGCTGCCGGAGCCGCCGGAAGAGCTGGACGTGAGCTTTGTGATATTTAATGGGCGCAACCGGTCGTACCCGCAGTACTTGAACAAGTTCCCGAGC ] [+] EMBL BM603296 [ ccgGCCGGCAGCTTCGCAATCGTCCAAGAAAGTTGCGGCAACGCGGAAGTGTAAATTTGGAGTCGTGATAGTTGGGG AAAAAAACCGTTTCGGCTACTTCCACCACGGTGTGCACGCGACCATAAACCGATCATTCAATCTTCATCGATCATACACTGTCTGTGGAGGCAATCACATCAACCAACCAATCGTACAGTTATATATAGTGAAAGACCCTGAACACTACCGATCTTGCACGCGGCTACAGCACATGCAGGATGTAAAGAGACAGATAGGTGACGCCATATCAGACATTCCGCTG TTTTTTTGAAGTGTTTTTGGAGGGGTACTGGATGCTGCAAAGGGCAGCCCTAGATTAAGAAAATGAACGGAACGGGCTTAATGTTTCCCACCTTTTTACTGCTGCACAACTACTCGCTCAACTACGGTGACAACAGTGTTGTGAACAGTCCACGACTGCGGACAGATCTTACCGTGTGCTATGGTATCTTCGGCTGCTACACCACGACCGATCCGTGGACGAGTGCCCGCCGCCCGATCGCACTGCTGCCGGAGCCGCCGGAAGAGCTGGACGTGAGCTTTGTGATATTTAATGGGCGCAACCGGTCGTACCCGCAGTACTTGAACAAGTTCCCGAGCTACCTGGACCTGCCGGACTCGATCAGCTCGACCGACATTAACCCGAGGGGC ] [+] EMBL BM608286 [ ccgGGGGTACTGGATGCTGCAAAGGGCAGCCCTAGATTAAGAAAATGAACGGAACGGGCTTAATGTTTCCCACCTTTTTACTGCTGCACAACTACTCGCTCAACTACGGTGACAACAGTGTTGTGAACAGTCCACGACTGCGGACAGATCTTACCGTGTGCTATGGTATCTTCGGCTGCTACACCACGACCGATCCGTGGACGAGTGCCCGCCGCCCGATCGCACTGCTGCCGGAGCCGCCGGAAGAGCTGGACGTGAGCTTTGTGATATTTAATGGGCGCAACCGGTCGTACCCGCAGTACTTGAACAAGTTCCCGAGCTACCTGGACCTGCCGGACTCGATCAGCTCGACCGACATTAACCCGAGGGGCATGATCTACTTCATCACGCACGGCTTTCTGGAGAAGGGGGCCACGAAATGGATTGAAAAAATGATGAACGCGCTGCTGGATATGGACGCCGACTCGACGGTGATTGTTATCGACTGGGGCAAGGGCTCCAATCCACCGTACAATCAGGCGTGCGCTAACATTCGGTTGGTGGGGAACATCGTGGGGCACTTTATATATACGATGATGGGTCAGCTAGGATTGCAGAACCTCGACAACGTGCACATGATAGGTCACTCGCTCGGTTCGCACCTCTCCGGATATACCGGCACGATGCTGCGTGACACCTACAACCTAACGCTTGGTCG] [+] EMBL BM594411 [ ccgCCGACATTAACCCGAGGGGCATGATCTACTTCATCACGCACGGCTTTCTGGAGAAGGGGGCCACGAAATGGATTGAAAAAATGATGAACGCGCTGCTGGATATGGACGCCGACTCGACGGTGATTGTTATCGACTGGGGCAAGGGCTCCAATCCACCGTACAATCAGGCGTGCGCTAACATTCGGTTGGTGGGGAACATCGTGGGGCACTTTATATATACGATGATGGGTCAGCTAGGATTGCAGAACCTCGACAACGTGCACATGATAGGTCACTCGCTCGGTTCGCACCTCTCCGGATATACCGGCACGATGCTGCGTGACACCTACAACCTAA ] consensusID : consensus_7102#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 766 fasta sequence [NGCAGAATNGCCCCGAGGCTGTCTGTGGAGGCATCACATCAACAACCAATCGTACAGTTATATATAGTGAAATGACCCTGAACACTACCTGATCTTGCACTGCGTGCTACAGCACATGCAGTGATGTAAAGAGACAGATAGTGTGACTGCCATATCAGACATTCCTGCTGTTTTCTTTTGACACCGTGATTCTNTTGCGACGNGGTGTACTTGGATGCTTGCAAATGTGGCATGCCCTAAGATTAACTGAACAATTTGAACTGTGACACTGTGTGGCCTTTACACTTGTTTTTCNCCNACCCGTTTTTTACTTGTCTTGTCAACAACTTAACTCTCGGCTTCAACTTACCTGCTGTTGACATACGATGGTTGTTCTNTGTTGAAACCATGTCCCACTGAACTTGCGTGAACCAATGAATCCTTTACCTGTTGTTGCTATTGNGTATCTTCTGTGCTTGCGTTACAACCCAAACCTGGGAACCCCGTGGAGAAGGTTTTNCACCCCCACATAGTAGGGGGGTTTTATGGGGGGCGGGAAAAAACCCCCTTTNTGAAACACATCGGGTTTTTTTTTGTGGGGTGCTGCTGCCCCTGCACCCCCTATGNGGGGGCCGCCCCCCTTNGGGGGTCCGTGACCCCCCCCCTCTGTGGGNGAGAAAACGTTTTTTTCCCCTCTGAGGGGGANCGCGCGAAAGAGTAGCCCCGTTTTTTTTTTTCGGTGGGGTGCGCCCGCGTTTTTTTTCGTGGGGGGGTCGACACCCTCTTT] [+] EMBL AL932004 [NGCAGAATNGCCCCGAGGCTGTCTGTGGAGGCATCACATCAACAACCAATCGTACAGTTATATATAGTGAAATGACCCTGAACACTACCTGATCTTGCACTGCGTGCTACAGCACATGCAGTGATGTAAAGAGACAGATAGTGTGACTGCCATATCAGACATTCCTGCTGTTTTCTTTTGACACCGTGATTCTNTTGCGACGNGGTGTACTTGGATGCTTGCAAATGTGGCATGCCCTAAGATTAACTGAACAATTTGAACTGTGACACTGTGTGGCCTTTACACTTGTTTTTCNCCNACCCGTTTTTTACTTGTCTTGTCAACAACTTAACTCTCGGCTTCAACTTACCTGCTGTTGACATACGATGGTTGTTCTNTGTTGAAACCATGTCCCACTGAACTTGCGTGAACCAATGAATCCTTTACCTGTTGTTGCTATTGNGTATCTTCTGTGCTTGCGTTACAACCCAAACCTGGGAACCCCGTGGAGAAGGTTTTNCACCCCCACATAGTAGGGGGGTTTTATGGGGGGCGGGAAAAAACCCCCTTTNTGAAACACATCGGGTTTTTTTTTGTGGGGTGCTGCTGCCCCTGCACCCCCTATGNGGGGGCCGCCCCCCTTNGGGGGTCCGTGACCCCCCCCCTCTGTGGGNGAGAAAACGTTTTTTTCCCCTCTGAGGGGGANCGCGCGAAAGAGTAGCCCCGTTTTTTTTTTTCGGTGGGGTGCGCCCGCGTTTTTTTTCGTGGGGGGGTCGACACCCTCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7102#0 CCGCTCTGCGCCAGTGCAATACCCCTTAATCTGTTGCCGGCAGCTTCGCAATCGTCCAAG 60 consensus_7102#1 ------------------------------------------------------------ consensus_7102#0 AAAGTTGCGGCAACGCGGAAGTGTAAATTTGGAGTCGTGATAGTTGGGGAAAAAAACCGT 120 consensus_7102#1 ------------------------------------------------------------ consensus_7102#0 TTCGGCTACTTCCACCACGGTGTGCACGCGACCATAAACCGATCATTCAATCTTCATCGA 180 consensus_7102#1 -------------------------------------------------NGCAGAATNGC 11 * ** * consensus_7102#0 TCATACACTGTCTGTGGAGGCAATCACATCAACCAACCAATCGTACAGTTATATATAGTG 240 consensus_7102#1 CCCGAGGCTGTCTGTGGAGGCA-TCACATCAAC-AACCAATCGTACAGTTATATATAGTG 69 * * *************** ********** ************************** consensus_7102#0 AAA-GACCCTGAACACTACC-GATCTTGCAC-GCG-GCTACAGCACATGCAG-GATGTAA 295 consensus_7102#1 AAATGACCCTGAACACTACCTGATCTTGCACTGCGTGCTACAGCACATGCAGTGATGTAA 129 *** **************** ********** *** **************** ******* consensus_7102#0 AGAGACAGATAG-GTGAC-GCCATATCAGACATTCC-GCTGTTTT--TTTAA----GTGT 346 consensus_7102#1 AGAGACAGATAGTGTGACTGCCATATCAGACATTCCTGCTGTTTTCTTTTGACACCGTGA 189 ************ ***** ***************** ******** *** * *** consensus_7102#0 TTTTG-------GAGGGGTACT-GGATGCT-GCAAAGG--GCA-GCCCTA-GATTAAGAA 393 consensus_7102#1 TTCTNTTGCGACGNGGTGTACTTGGATGCTTGCAAATGTGGCATGCCCTAAGATTAACTG 249 ** * * ** ***** ******* ***** * *** ****** ****** consensus_7102#0 AATGAACGGAACGGGCTTAATGTTT--CCCACCTTTTTACTGCTGCACAACTACTCGCTC 451 consensus_7102#1 AACAATTTGAACTGTGACACTGTGTGGCCTTTACACTTGTTTTTCNCCNACCCGTTTTTT 309 ** * **** * * *** * ** ** * * * ** * * consensus_7102#0 AACTACGGTGACAACAGTGTTGTGAACAGTCCACGACTGCGGACAGAT--CTTACCGTGT 509 consensus_7102#1 ACTTGTCTTGTCAACAACTTAACTCTCGGCTTCAACTTACCTGCTGTTGACATACGATG- 368 * * ** ***** * * * * * * * * * *** ** consensus_7102#0 GCTATGGTATCTTCGGCTGCTACACCACGACCGATCCGTGGACGAGTG--CCCGCCGCCC 567 consensus_7102#1 GTTGTTCTNTGTTGAAACCATGTCCCACTGAACTTGCGTGAACCAATGAATCCTTTACCT 428 * * * * * ** * **** * **** ** * ** ** ** consensus_7102#0 GATCGCACTGCTGCCGGAGCCGCCGGAA--GAGCTGGACGTGAGCTTTGTGATATTTAAT 625 consensus_7102#1 GTTGTTGCTATTGN-GTATCTTCTGTGCTTGCGTTACAACCCAAACCTGGGA-ACCCCGT 486 * * ** ** * * * * * * * * * * ** ** * * consensus_7102#0 GGGCGCAACCGGTCGTACCCGCAGTACTTGAACAAGTTCCCGAGCTACCTGGACCTGCCG 685 consensus_7102#1 GGAGAAGGTTTTNCACCCCCACA-TAGTAGGGGGGTTTTATGGGGGGCGGGAAAAAACCC 545 ** * *** ** ** * * ** * * * * * ** consensus_7102#0 GACTCGATCAGCTCGACCGACATTAACCCGAGGGGCATGATCTACTTCATCACGCACGGC 745 consensus_7102#1 CCTTTNTGAAACACATCGGGTTTTTTTTTGTGGGGTG----CTGCTGC-CCCTGCACC-C 599 * * * * * * ** * **** ** ** * * **** * consensus_7102#0 TTTCTGGAGAAGGGGGCCACGAAATGGATTGAAAAAATGATGAACGCGCTGCTGGATATG 805 consensus_7102#1 CCTATGNGGGGGCCGCCCCCCTTNGGGGGTCCGTGACCCCCCCCCTCTGTGGGNGAGAAA 659 * ** * * * ** * ** * * * * ** ** * consensus_7102#0 GACGCCGACTCGACGGTGATTGTTATCGACTGGGGCAAGGGCTCCAATCCACCGTACAAT 865 consensus_7102#1 ACGTTTTTTTCCCCTCTGAGGGGGANCGCGCGAAAGAGTAGCCCCGTTTTTTTTTTTCGG 719 ** * *** * * ** * * ** ** * * consensus_7102#0 CAGGCGTGCGCTAACATTCGGTTGGTGGGGAACATCGTGGGGCACTTTATATATACGATG 925 consensus_7102#1 TGGG-GTGCGCCCGCGTTTTTTTTCGTGGGGGGGTCGACACCCTCTTT------------ 766 ** ****** * ** ** *** *** * **** consensus_7102#0 ATGGGTCAGCTAGGATTGCAGAACCTCGACAACGTGCACATGATAGGTCACTCGCTCGGT 985 consensus_7102#1 ------------------------------------------------------------ consensus_7102#0 TCGCACCTCTCCGGATATACCGGCACGATGCTGCGTGACACCTACAACCTAACGCTTGGT 1045 consensus_7102#1 ------------------------------------------------------------ consensus_7102#0 CG 1047 consensus_7102#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||