cluster # 7108

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Anopheles gambiae
cluster # 7108 cluster # 7108 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7108#0 length = 977 sequences # 5

consensus_7108#1 length = 526 sequences # 1

consensusID : consensus_7108#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 977
fasta sequence

                              [CCGGTTCCTCCGAGCAAGTCGGTGTTCTCTCGGGGCAATAGGATTAGAAAGAAAAGGTGTTAAAGCATTTCTCCAAACGCCATTTTTTTTTAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGTATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCAAAGAAGCAAAGCGCGGCTAGCTTGCTTTTGAGGAAGAAAAA-CCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACACCCGAGTCAGAGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTCTCCGCCCCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCTGGCGATGCG-CTGATCAAGGTCAACGGTACGGAGGTGTTCAACATGCGTCACAAGGATGCGCAGGACGTCATCGTGGCCGCTGGAAACTCGTTCGAGCTGACGGTGTCGAGAGGTGGTGCTACCTGGCGTCCGTCTGTTACGCCGACCGGTTCGCTACCGTCGCCGTCTCCATCGCTGCCCGGCAACGTCACACCGGTTACGCGCACCTCGCTGGCAGCGACGCCCCAGGAGATGAAACCGATCGGCAGTGGCCACAACACCGCCGCCAAACCGTTCGCTGCTGTAAACGGAAACGATGGACAGATCAAGAGCATCGTCAACAACCAATACAACACCCCGGTCGGCATGTACAGCGATGAGACCATCGCCGAAACGCTGTCCTCT]

[+] EMBL BM582217             [CCGGTTCCTTCGAGCAAGTCGGTGTTCTCTCGGGGCAATAGGATTAGAAAGAAAAGGTGTTAAAGCATTTCTCCAAACGCCATTTTTTTTTAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGTATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCAAAGAAGCAAAGCGCGGCTAGCTTGCTTTTGAGGAAGAAAAA CCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACACCCGAGTCAGAGACAACCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTCTCCGCCCCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCTGGCGATGCG CTGATCAAGGTCACGGGTACGGAGGTGTTCAA                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL BM580542             [         CCGAGCAAGTCGGTGTTCTCTCGGGGCAATAGGATTAGAAAGAAAAGGTGTTAAAGCATTTCTCCAAACGCCATTTTTTTTTAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGTATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCAAAGAAGCAAAGCGCGGCTAGCTTGCTTTTGAGGAAGAAAAA CCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACACCCGAGTCAGAGACAACCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTCTCCGCCCCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCC                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL BM584607             [        ccgGAGCAAGTCGGTGTTCTCTCGGGGCAATAGGATTAGAAAGAAAAGGTGTTAAAGCATTTCTCCAAACGCCA  TTTTTTTAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGTATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCAAAGAAGCAAAGCGCGGCTAGCTTGCTTTTGAGGAAGAAAAA CCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGTACGAAAAAGGGGTACACCCGAGTCAGAGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGTGGCAAGGATTTCTCCGCCCCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCTGGCGATGCGCCTGATCAAGGTCAACGGTACGGAGGTGTTCAACATGCGTCACAAGGATGCGCAGGACGTCATCGTGGACGCTGGAAACTCGTTCG                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM633742             [                                                                                                                                                                                                                                                                   ccGCTTGCTTTAGAGGAAGAAAAACCCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTA   CCGAGTCAGCGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGCTATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTTTCCGCCCCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCTGGCGATGCG CTGATCAAGGTCAACGGTACGGAGGTGTTCAACATGCGTCACAAGGATGCGCAGGACGTCATCGTGGCCGCTGGAAACTCGTTCGAGCTGACGGTGTCGAGAGGTGGTGCTACCTGGCGTCCGTCTGTTACGCCGACCGGTTCGCTACCGTCGCCGTCTCCATCGCTGCCCGGCAACGTCACACCGGTTACGCGCACCTCGCTGGCAGCGACGCCCCAGGAGAT                                                                                                                                                       ]
[+] EMBL BM635251             [                                                                                                                                                                                                                                                                                                                                                                        ccgGAGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGTGGCAAGGATTTCTCCGCCCCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCTGGCGATGCG CTGATCAAGGTCAACGGTACGGAGGTGTTCAACATGCGTCACAAGGATGCGCAGGACGTCATCGTGGCCGCTGGAAACTCGTTCGAGCTGACGGTGTCGAGAGGTGGTGCTACCTGGCGTCCGTCTGTTACGCCGACCGGTTCGCTACCGTCGCCGTCTCCATCGCTGCCCGGCAACGTCACACCGGTTACGCGCACCTCGCTGGCAGCGACGCCCCAGGAGATGAAACCGATCGGCAGTGGCCACAACACCGCCGCCAAACCGTTCGCTGCTGTAAACGGAAACGATGGACAGATCAAGAGCATCGTCAACAACCAATACAACACCCCGGTCGGCATGTACAGCGATGAGACCATCGCCGAAACGCTGTCCTCT]




>consensus_7108#0
CCGGTTCCTCCGAGCAAGTCGGTGTTCTCTCGGGGCAATAGGATTAGAAAGAAAAGGTGT
TAAAGCATTTCTCCAAACGCCATTTTTTTTTAAAAGGAATAAGAGCATAATCCGCCAATC
AGTGTCAAGTGTGTATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTG
AGCGGAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAG
CAAAGAAGCAAAGCGCGGCTAGCTTGCTTTTGAGGAAGAAAAACCGATCCCTCGCAGCTC
CCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACACCCGAGT
CAGAGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTC
AGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTGCAGCGTG
GCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTCTCCGCCCCGCTGG
TGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCTGGCGATG
CGCTGATCAAGGTCAACGGTACGGAGGTGTTCAACATGCGTCACAAGGATGCGCAGGACG
TCATCGTGGCCGCTGGAAACTCGTTCGAGCTGACGGTGTCGAGAGGTGGTGCTACCTGGC
GTCCGTCTGTTACGCCGACCGGTTCGCTACCGTCGCCGTCTCCATCGCTGCCCGGCAACG
TCACACCGGTTACGCGCACCTCGCTGGCAGCGACGCCCCAGGAGATGAAACCGATCGGCA
GTGGCCACAACACCGCCGCCAAACCGTTCGCTGCTGTAAACGGAAACGATGGACAGATCA
AGAGCATCGTCAACAACCAATACAACACCCCGGTCGGCATGTACAGCGATGAGACCATCG
CCGAAACGCTGTCCTCT

consensusID : consensus_7108#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 526
fasta sequence

                              [CCGCCCACGCGTCCGGGGGCAATAGGATTAGAAAGAAAAGGTGTTCAAGCATTTCTCCAAACGCCATTTTTTTAAAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGCATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAAAAAAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCTAAGAAGCAAAGCGCGGCTAGCTTGCTTTAGAGGAAGAAAAACCCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACCGAGTCAGCGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGCTATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTTTCCGCCCCGCT]

[+] EMBL BM646241             [CCGCCCACGCGTCCGGGGGCAATAGGATTAGAAAGAAAAGGTGTTCAAGCATTTCTCCAAACGCCATTTTTTTAAAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGCATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAAAAAAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCTAAGAAGCAAAGCGCGGCTAGCTTGCTTTAGAGGAAGAAAAACCCGATCCCTCGCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACCGAGTCAGCGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCATCTAACTCATAAGCTATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTTTCCGCCCCGCT]




>consensus_7108#1
CCGCCCACGCGTCCGGGGGCAATAGGATTAGAAAGAAAAGGTGTTCAAGCATTTCTCCAA
ACGCCATTTTTTTAAAAAAGGAATAAGAGCATAATCCGCCAATCAGTGTCAAGTGTGCAT
ATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTGAGCGGAAAAAAAAGTT
CTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGTCGCAAGCTAAGAAGCA
AAGCGCGGCTAGCTTGCTTTAGAGGAAGAAAAACCCGATCCCTCGCAGCTCCCACACAGC
AGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACCGAGTCAGCGACACCCG
CGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCATTTCTTCAGCATCTAGCAT
CTAACTCATAAGCTATGGCCAATCTAATCACAGTGCGTCTGCAGCGTGGCGACGGTCAGG
CCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTTTCCGCCCCGCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7108#0      CCGGTTCCTCCGAGCAAGTCGGTGTTCTCTCGGGGCAATAGGATTAGAAAGAAAAGGTGT 60
consensus_7108#1      ---------------CCGCCCACGCG-TCCGGGGGCAATAGGATTAGAAAGAAAAGGTGT 44
                                       * *   *   **  *****************************

consensus_7108#0      TAAAGCATTTCTCCAAACGCCATTTTTTTTTAAAAGGAATAAGAGCATAATCCGCCAATC 120
consensus_7108#1      TCAAGCATTTCTCCAAACGCCATTTTTTTAAAAAAGGAATAAGAGCATAATCCGCCAATC 104
                      * ***************************  *****************************

consensus_7108#0      AGTGTCAAGTGTGTATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTG 180
consensus_7108#1      AGTGTCAAGTGTGCATATGTGTATGTGTTAGTTTGTGTTTGCGTAATCGAAGTGAGTTTG 164
                      ************* **********************************************

consensus_7108#0      AGCGGAA------GTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGT 234
consensus_7108#1      AGCGGAAAAAAAAGTTCTGCACTCAACGTGAATCAGTAGTCAGTGTACCAGTGTGTGCGT 224
                      *******      ***********************************************

consensus_7108#0      CGCAAGCAAAGAAGCAAAGCGCGGCTAGCTTGCTTTTGAGGAAGAAAAACC-GATCCCTC 293
consensus_7108#1      CGCAAGCTAAGAAGCAAAGCGCGGCTAGCTTGCTTTAGAGGAAGAAAAACCCGATCCCTC 284
                      ******* **************************** ************** ********

consensus_7108#0      GCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTACA 353
consensus_7108#1      GCAGCTCCCACACAGCAGGACGCTCTCCCCGGGGTTGTTTGTGCACGAAAAAGGGGTA-- 342
                      **********************************************************  

consensus_7108#0      CCCGAGTCAGAGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCA 413
consensus_7108#1      -CCGAGTCAGCGACACCCGCGTATATCGGGTCTTTTTTGTACTTCTTCAATTTGCAAGCA 401
                       ********* *************************************************

consensus_7108#0      TTTCTTCAGCATCTAGCATCTAACTCATAAGATATGGCCAATCTAATCACAGTGCGTCTG 473
consensus_7108#1      TTTCTTCAGCATCTAGCATCTAACTCATAAGCTATGGCCAATCTAATCACAGTGCGTCTG 461
                      ******************************* ****************************

consensus_7108#0      CAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTCTCCGCC 533
consensus_7108#1      CAGCGTGGCGACGGTCAGGCCTGGGGCTTCCGTCTGCAGGGCGGCAAGGACTTTTCCGCC 521
                      ***************************************************** ******

consensus_7108#0      CCGCTGGTGCTACAGAGAGTTAACGGTGGCAGCGTGGCCGACCAGGCCGGTCTGATGGCT 593
consensus_7108#1      CCGCT------------------------------------------------------- 526
                      *****                                                       

consensus_7108#0      GGCGATGCGCTGATCAAGGTCAACGGTACGGAGGTGTTCAACATGCGTCACAAGGATGCG 653
consensus_7108#1      ------------------------------------------------------------
                                                                                  

consensus_7108#0      CAGGACGTCATCGTGGCCGCTGGAAACTCGTTCGAGCTGACGGTGTCGAGAGGTGGTGCT 713
consensus_7108#1      ------------------------------------------------------------
                                                                                  

consensus_7108#0      ACCTGGCGTCCGTCTGTTACGCCGACCGGTTCGCTACCGTCGCCGTCTCCATCGCTGCCC 773
consensus_7108#1      ------------------------------------------------------------
                                                                                  

consensus_7108#0      GGCAACGTCACACCGGTTACGCGCACCTCGCTGGCAGCGACGCCCCAGGAGATGAAACCG 833
consensus_7108#1      ------------------------------------------------------------
                                                                                  

consensus_7108#0      ATCGGCAGTGGCCACAACACCGCCGCCAAACCGTTCGCTGCTGTAAACGGAAACGATGGA 893
consensus_7108#1      ------------------------------------------------------------
                                                                                  

consensus_7108#0      CAGATCAAGAGCATCGTCAACAACCAATACAACACCCCGGTCGGCATGTACAGCGATGAG 953
consensus_7108#1      ------------------------------------------------------------
                                                                                  

consensus_7108#0      ACCATCGCCGAAACGCTGTCCTCT 977
consensus_7108#1      ------------------------