These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1205 fasta sequence [CCGCTATCCTGTACTTTATTTTGTGAAATTTAATTATTTGTATTCACATCTTCTAGCCCACTCCTATTTAGGGGGATGAAGAGTCTCATTGAACTCATCGCTTGAACTCTCTAGACATTATCGTTAGCAGAACTACTGTAAAGAAAACGAACCTAGAATCTAACGAACTTCACCATCACAGCAAACAAAAAAAAAAAAAAGATTAATCAGACGTTCCTTTTAGGTCAGGGCAAGCTGATCTACTAAAGCTGTTGTAAAACTGTGCCAAGATGGGTGATTGGGAAATGGGCAAAAGGAGAACTTTAGTGAAGCATTGTGTAGGGTTTAGGCAATCGTAGCATCGTGATCGAGATAGAGAGTGTAACAGTAGCAAAGCAGAAATAGTGAATAATCAAAATACAGGCAACAAGTGTAAAGCACTGTTGCAAACGAATTGAATTCGTAGTGAGGTAGCGAGGTGTAGTGATCGCATTGGAGTTACAGTGGAATCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAAACGCGCGCTAGTGAGCAGCATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGAGAAAGAGAGCAATCTTTCTTTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGCATCAGTAAACTTGATTTTTGCGTGGACCAACAGCATGCTAGTAGCGCACGAATGGGGGCTGTAATGTTGGGGAAGGGTAGCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGGAGTCTATTTATACTCACCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTTGTGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCATTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTACCGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTAGAAGAAGAAGAAAAACCGATAGAGAACCCGTAAGATTCGGAACATTAATGTCGACTCCTGCCTTTCGAANGGCATGAGANCATGTTTTGTAAATAATTTAAACAAAAATCCGATAAATAATCCAATCCTCC] [+] EMBL BM647807 [CCGCTATCCTGTACTTTATTTTGTGAAATTTAATTATTTGTATTCACATCTTCTAGCCCACTCCTATTTAGGGGGATGAAGAGTCTCATTGAACTCATCGCTTGAACTCTCTAGACATTATCGTTAGCAGAACTACTGTAAAGAAAACGAACCTAGAATCTAACGAACTTCACCATCACAGCAAACAAAAAAAAAAAAAAGATTAATCAGACGTTCCTTTTAGGTCAGGGCAAGCTGATCTACTAAAGCTGTTGTAAAACTGTGCCAAGATGGGTGATTGGGAAATGGGCAAAAGGAGAACTTTAGTGAAGCATTGTGTAGGGTTTAGGCAATCGTAGCATCGTGATCGAGATAGAGAGTGTAACAGTAGCAAAGCAGAAATAGTGAATAATCAAAATACAGGCAACAAGTGTAAAGCACTGTTGCAAACGAATTGAATTCGTAGTGAGGTAGCGAGGTGTAGTGATCGCATTGGAGTTACAGTGGAATCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAAA GGGCGCTAGTAAGCAGAATCGATTATATTCCGACACCTTCATTGTTACTAT ] [+] EMBL BX623910 [ AGGTAGCGCGGTGTAGTGATCGGATTGGAGTTACAGTGGAGTCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAAACGCGCGCTAGTGAGCAGCATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGAGAAAGAGAGCAATCTTTCTTTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGCATCAGTAAACTTGATTTTTGCGTGGACCAACAGCATGCTAGTAGCGCACGAATGGGGGCTGTAATGTTGGGGAAGGGTAGCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGGAGTCTATTTATACTCACCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTTGTGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCATTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTACCGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTAGAAGAAGAAGAAAAACCGATAGAGAACCCGTAAGATTCGGAACATTAATGTCGACTCCTGCCTTTCGAANGGCATGAGANCATGTTTTGTAAATAATTTAAACAAAAATCCGATAAATAATCCAATCCTCC] [+] EMBL BX610542 [ AAACCCAAGCGACAAACGCGCGCTAGTGAGCAGCATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGAGAAAGAGAGCAATCTTTCTTTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGCATCAGTAAACTTGATTTTTGCGTGGACCAACAGCATGCTAGTAGCGCACGAATGGGGGCTGTAATGTTGGGGAAGGGTAGCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGGAGTCTATTTATACTCACCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTTGTGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCATTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTACCGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTAGAAGAAGAAG AAAACCGATAGAGAACCCGTAAGATTCGGAACATTAATGTCGACTCCTGCCTTTCGAAGGGCATGAGACCATGTTTTGTAAAT ] [+] EMBL BX610543 [ ACAAACGCGCGCTAGTGAGCAGCATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGAGAAAGAGAGCAATCTTTCTTTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGCATCAGTAAACTTGATTTTTGCGTGGACCAACAGCATGCTAGTAGCGCACGAATGGGGGCTGTAATGTTGGGGAAGGGTAGCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGGAGTCTATTTATACTCACCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTTGTGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCATTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTACCGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTA ] consensusID : consensus_7115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [GATCCCCCGAGGTTNAAACTGTGCCAAGATGGGTNATTGGGAAATGGGCAAAAGGAGAACTTTAGTGAAGCATTGTGTAGGGTTTAGGCAATCGTAGCATCGTGATCGAGATAGAGAGTGTAACAGTAGCAAAGCAGAAATAGTGAATAATCAAAATACAGGCAACAAGTGTAAAGCACTGTTGCAAACGAATTGAATTCGTAGTGAGGTAGCGAGGTGTAGTGATCGCATTGGAGTTACAGTGGAATCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAAAGGCGCTAGTAAGCAGAATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGAGAAAGAGAGCAATCTTTCTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGCAACAGCAAACTTGATTTTCTGCGTGGACCAACCGCATGCTAGTAGCGCACGAAATGGGCTGTAATGTTGGGGAAGGGTANCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGGAGTCTATTTTACTCATCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTGTGAACTAGAAGTTATAGAACCTTTTAGGAATTTGAG] [+] EMBL AL932571 [GATCCCCCGAGGTTNAAACTGTGCCAAGATGGGTNATTGGGAAATGGGCAAAAGGAGAACTTTAGTGAAGCATTGTGTAGGGTTTAGGCAATCGTAGCATCGTGATCGAGATAGAGAGTGTAACAGTAGCAAAGCAGAAATAGTGAATAATCAAAATACAGGCAACAAGTGTAAAGCACTGTTGCAAACGAATTGAATTCGTAGTGAGGTAGCGAGGTGTAGTGATCGCATTGGAGTTACAGTGGAATCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAAAGGCGCTAGTAAGCAGAATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGAGAAAGAGAGCAATCTTTCTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGCAACAGCAAACTTGATTTTCTGCGTGGACCAACCGCATGCTAGTAGCGCACGAAATGGGCTGTAATGTTGGGGAAGGGTANCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGGAGTCTATTTTACTCATCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTGTGAACTAGAAGTTATAGAACCTTTTAGGAATTTGAG] consensusID : consensus_7115#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [GACCCACGCGTCCGCCCACGCGTCCGGTGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCATTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTACCGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTAGAAGAAGAAGAAAAACCGATAGAGAACCCGTAAGATTCGGAACATTAATGTCGACTCCTGCCTTTCGAAGGGCATGAGACCATGTTTTGTAAATAATTTAAAACAAAAATCCGATAAAATAATCCAATCCTCCCCTCCCTCTCCATACCGTGATTAGAAACAAATATACAACGTTAGACGCAAATCAAACAAAACGCAAAAGGGGGAGCAACACGCAGATCAGATGAAATACACTATTTTACTTTTTGTTATTTACGAAGTAGTGGAATTATTAAGTGCAGAACAGCGAGTTAAAATAAA] [+] EMBL BM655212 [GACCCACGCGTCCGCCCACGCGTCCGGTGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCATTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTACCGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTAGAAGAAGAAGAAAAACCGATAGAGAACCCGTAAGATTCGGAACATTAATGTCGACTCCTGCCTTTCGAAGGGCATGAGACCATGTTTTGTAAATAATTTAAAACAAAAATCCGATAAAATAATCCAATCCTCCCCTCCCTCTCCATACCGTGATTAGAAACAAATATACAACGTTAGACGCAAATCAAACAAAACGCAAAAGGGGGAGCAACACGCAGATCAGATGAAATACACTATTTTACTTTTTGTTATTTACGAAGTAGTGGAATTATTAAGTGCAGAACAGCGAGTTAAAATAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7115#0 CCGCTATCCTGTACTTTATTTTGTGAAATTTAATTATTTGTATTCACATCTTCTAGCCCA 60 consensus_7115#1 ------------------------------------------------------------ consensus_7115#2 ------------------------------------------------------------ consensus_7115#0 CTCCTATTTAGGGGGATGAAGAGTCTCATTGAACTCATCGCTTGAACTCTCTAGACATTA 120 consensus_7115#1 ------------------------------------------------------------ consensus_7115#2 ------------------------------------------------------------ consensus_7115#0 TCGTTAGCAGAACTACTGTAAAGAAAACGAACCTAGAATCTAACGAACTTCACCATCACA 180 consensus_7115#1 ------------------------------------------------------------ consensus_7115#2 ------------------------------------------------------------ consensus_7115#0 GCAAACAAAAAAAAAAAAAAGATTAATCAGACGTTCCTTTTAGGTCAGGGCAAGCTGATC 240 consensus_7115#1 --------------------------------------------------------GATC 4 consensus_7115#2 ------------------------------------------------GACCCACGCGTC 12 ** consensus_7115#0 TACTAAAGCTGTTGTAAAACTGTGCCAAGATGGGTGATTGGGAAATGGGCAAAAGGAGAA 300 consensus_7115#1 CCCCGAGGTTN-----AAACTGTGCCAAGATGGGTNATTGGGAAATGGGCAAAAGGAGAA 59 consensus_7115#2 CGCCCACGCGTCCGGTGAACTAGAAGTTAAAGAACCTTTTAGGAAT---TTGAGGGCAAA 69 * * * **** * * ** * *** * ** ** consensus_7115#0 CTTTAGTGAAGCATTGTGTAGGGTTTAGGCAATCGTAGCATCGTGATCGAGATAGA--GA 358 consensus_7115#1 CTTTAGTGAAGCATTGTGTAGGGTTTAGGCAATCGTAGCATCGTGATCGAGATAGA--GA 117 consensus_7115#2 ATTTATACATTCATTGCATTGAGAT-AGTTGATTAAGACAA-GCGCGCGGGACCGTTCAG 127 **** * ***** * * * * ** ** ** * * ** ** * consensus_7115#0 GTGTAACAGTAGCAAA-GCAGAAATAGTGAATAATCAAAATACAGGCAACAAGTGTAAAG 417 consensus_7115#1 GTGTAACAGTAGCAAA-GCAGAAATAGTGAATAATCAAAATACAGGCAACAAGTGTAAAG 176 consensus_7115#2 ATACGCTTTCAGCCGTTGAATCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCA 187 * *** * * ******** *** * **** * ** * * consensus_7115#0 CACTGTTGCAAACGAATTGAATTCGTAGTGAGGTAGCGAGGTGTAGTGATCGCATTGGAG 477 consensus_7115#1 CACTGTTGCAAACGAATTGAATTCGTAGTGAGGTAGCGAGGTGTAGTGATCGCATTGGAG 236 consensus_7115#2 CAAGACAACAGAAGAACTA---CCGCAGACGGGACACGCA-TACACAAACCTAATGAGAA 243 ** ** * *** * ** ** ** ** * * * * ** ** consensus_7115#0 TTACAGTGGAATCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAA 537 consensus_7115#1 TTACAGTGGAATCGCTGTGTCTCTCCAACATTGGTAGATTACAAGAAACCCAAGCGACAA 296 consensus_7115#2 -------AGAGTGCTAGTGATTACCT----TTAGAAGA--AGAAGAAA---AACCGATAG 287 ** * *** * * ** * *** * ****** ** *** * consensus_7115#0 ACGCGCGCTAGTGAGCAGCATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGA 597 consensus_7115#1 AGGCGC--TAGTAAGCAGAATCGATTATATTCCGACACCTTCATTGTTACTATGAGAAGA 354 consensus_7115#2 AGAACCCGTAAGATTCGGAAC--ATTA-ATGTCGACTCCTGCCTTTC--------GAAGG 336 * * ** * * * **** ** **** *** * ** **** consensus_7115#0 GAAAGAGAGCAATCTTTCTTTTTTTTTATTTACTAAACGATCAAAAGCATGATCGTGAGC 657 consensus_7115#1 GAAAGAGAGCAATCTTTCTTTTTTT--ATTTACTAAACGATCAAAAGCATGATCGTGAGC 412 consensus_7115#2 GCATGAGACCA-----TGTTTTGTA--AATAATTTAA--AACAAAAATCCGATAAAATAA 387 * * **** ** * **** * * * * * ** * ***** *** consensus_7115#0 ATCAGTAAACTTGATTTT-TGCGTGGACCAACAGCATGCTAGTAGCGCACGAATGGGGGC 716 consensus_7115#1 AACAGCAAACTTGATTTTCTGCGTGGACCAACCGCATGCTAGTAGCGCACGAA-ATGGGC 471 consensus_7115#2 TCCAATCCTCCCCTCCCTCTCCATACCGTGATTAGAAACAAATA---TACAAC-GTTAGA 443 ** * * * * * * * * * ** ** * * consensus_7115#0 TGTAATGTTGGGGAAGGGTAGCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGG 776 consensus_7115#1 TGTAATGTTGGGGAAGGGTANCAACGAACGTGAACTTGCATCGAAAGAAAGGAATGCGGG 531 consensus_7115#2 CGCAAATCAAACAAAACGCAAAAGGGGGAGC-AACACGCA--GATCAGATGAAATACACT 500 * ** ** * * * * * *** *** ** * * *** * consensus_7115#0 AGTCTATTTATACTCACCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGTTG 836 consensus_7115#1 AGTCTATTT-TACTCATCTGTGGGGTAGATATCATAAGGCTTGGCCCCATCATAATGT-G 589 consensus_7115#2 ATTTTACTTTTTGTTATTTACGAAGTAG----TGGAATTATTAAGTGCAGAACAGCGAGT 556 * * ** ** * * * * * **** ** ** ** * * * consensus_7115#0 TGAACTAGAAGTTAAAGAACCTTTTAGGAATTTGAGGGCAAAATTTATACATTCATTGCA 896 consensus_7115#1 TGAACTAGAAGTTATAGAACCTTTTAGGAATTTGAG------------------------ 625 consensus_7115#2 TAAAATAAA--------------------------------------------------- 565 * ** ** * consensus_7115#0 TTGAGATAGTTGATTAAGACAAGCGCGCGGGACCGTTCAGATACGCTTTCAGCCGTTGAA 956 consensus_7115#1 ------------------------------------------------------------ consensus_7115#2 ------------------------------------------------------------ consensus_7115#0 TCAATAGTGACTAAGAGACGGACAGAGACCAGGAATCGCACAAGACAACAGAAGAACTAC 1016 consensus_7115#1 ------------------------------------------------------------ consensus_7115#2 ------------------------------------------------------------ consensus_7115#0 CGCAGACGGGACACGCATACACAAACCTAATGAGAAAGAGTGCTAGTGATTACCTTTAGA 1076 consensus_7115#1 ------------------------------------------------------------ consensus_7115#2 ------------------------------------------------------------ consensus_7115#0 AGAAGAAGAAAAACCGATAGAGAACCCGTAAGATTCGGAACATTAATGTCGACTCCTGCC 1136 consensus_7115#1 ------------------------------------------------------------ consensus_7115#2 ------------------------------------------------------------ consensus_7115#0 TTTCGAANGGCATGAGANCATGTTTTGTAAATAATTTAAACAAAAATCCGATAAATAATC 1196 consensus_7115#1 ------------------------------------------------------------ consensus_7115#2 ------------------------------------------------------------ consensus_7115#0 CAATCCTCC 1205 consensus_7115#1 --------- consensus_7115#2 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||