These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_712#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [CCGGCTGCCTTCGCGACCCTCGCCCAACTGAAGGCCAAACTGTGCAACGAGTACCAAATACCGGTGGCGGTACAACGCTGGCGTTGTGACGATCAACCGCTAGACGATGACACTAGAACACTCTACGATTACGGTATACAGACGAGCGATCGGACGCTGTTTGTGTACATTGTACAGCCGGCCATACCAGCCAAAGATCCTAAGCCACCGCTGCTGAAGCAGCAAAACTTTAGCAGTGCCGAGATCAAGCTCCTGTCCGTATCGTCCGAATCGGACGGTGAGCATTCGGACACACAGAACGACGAAACTGTGCTCGGTGCTATAGCACTCCCTAAAGCTGCACCAAGAACTACTGTTACTGTGCCAAAGTGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGCCTGCCCAATGTGCACCCTGATAAACGCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGAGGCCCGACCAAGCCACCTGCGGCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGAAGATTTGACCCGCTATCTCGATCAGCAGCCACCGCTTGCGCCGGAACGCAGGACAAAAGAGCCGACAATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCGCATCTCGTCCAATCGCAAATCGTCCGACATCTTT] [+] EMBL BM646022 [CCGGCTGCCTTCGCGACCCTCGCCCAACTGAAGGCCAAACTGTGCAACGAGTACCAAATACCGGTGGCGGTACAACGCTGGCGTTGTGACGATCAACCGCTAGACGATGACACTAGAACACTCTACGATTACGGTATACAGACGAGCGATCGGACGCTGTTTGTGTACATTGTACAGCCGGCCATACCAGCCAAAGATCCTAAGCCACCGCTGCTGAAGCAGCAAAACTTTAGCAGTGCCGAGATCAAGCTCCTGTCCGTATCGTCCGAATCGGACGGTGAGCATTCGGACACACAGAACGACGAAACTGTGCTCGGTGCTATAGCACTCCCTAAAGCTGCACCAAGAACTACTGTTACTGTGCCAAAGTGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGCCTGCCCAATGTGCACCCTGATAAACGCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGAGGCCCGACCAAGCCACCTGCGGCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGAAGATTTGACCCGCTATCTCGATCAGCAGCCACCGCTTGCGCCGGAACGCAGGACAAAAGAGCCGACAATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCGCATCTCGTCCAATCGCAAATCGTCCGACATCTTT] consensusID : consensus_712#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGACGAAACTGTGCTCGGTGCTACGGCACTCCCTAAAGCTGCACCAAGAACTGCGGTTACTGTGCCAAAATGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGCCTGCCCTATGTGCACCCTGATAAACCCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGAGGCCCGACCAAGCCACCTCCGCCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGAAGATTTGACCCGCTATCTCGATCAGCAGCCACCGCTCGCGCCGGAACGCAGAACCAAAGAGCCGACGATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCGCATCTCGTCCAATCGCAA] [+] EMBL BM619162 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGACGAAACTGTGCTCGGTGCTACGGCACTCCCTAAAGCTGCACCAAGAACTGCGGTTACTGTGCCAAAATGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGCCTGCCCTATGTGCACCCTGATAAACCCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGAGGCCCGACCAAGCCACCTCCGCCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGAAGATTTGACCCGCTATCTCGATCAGCAGCCACCGCTCGCGCCGGAACGCAGAACCAAAGAGCCGACGATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCGCATCTCGTCCAATCGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_712#0 CCGGCTGCCTTCGCGACCCTCGCCCAACTGAAGGCCAAACTGTGCAACGAGTACCAAATA 60 consensus_712#1 ------------------------------------------------------------ consensus_712#0 CCGGTGGCGGTACAACGCTGGCGTTGTGACGATCAACCGCTAGACGATGACACTAGAACA 120 consensus_712#1 ------------------------------------------------------------ consensus_712#0 CTCTACGATTACGGTATACAGACGAGCGATCGGACGCTGTTTGTGTACATTGTACAGCCG 180 consensus_712#1 ------------------------------------------------------------ consensus_712#0 GCCATACCAGCCAAAGATCCTAAGCCACCGCTGCTGAAGCAGCAAAACTTTAGCAGTGCC 240 consensus_712#1 ------------------------------------------------------------ consensus_712#0 GAGATCAAGCTCCTGTCCGTATCGTCCGAATCGGACGGTGA-GCATTCGGACACACAGAA 299 consensus_712#1 ----------CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCC 50 * ** ** ** * ** ** * ** * ** *** * consensus_712#0 CGACGAAACTGTGCTCGGTGCTATAGCACTCCCTAAAGCTGCACCAAGAACTACTGTTAC 359 consensus_712#1 GGACGAAACTGTGCTCGGTGCTACGGCACTCCCTAAAGCTGCACCAAGAACTGCGGTTAC 110 ********************** *************************** * ***** consensus_712#0 TGTGCCAAAGTGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGC 419 consensus_712#1 TGTGCCAAAATGCGAAATCACAGTGGAGAATTCGTCCAGCGCCAGTGAGCCCGGATGGGC 170 ********* ************************************************** consensus_712#0 CTGCCCAATGTGCACCCTGATAAACGCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGA 479 consensus_712#1 CTGCCCTATGTGCACCCTGATAAACCCACTCGATCGTCCCGGGTGTGCGGCATGTTCCGA 230 ****** ****************** ********************************** consensus_712#0 GGCCCGACCAAGCCACCTGCGGCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGA 539 consensus_712#1 GGCCCGACCAAGCCACCTCCGCCCTCCGTCTCCCGTCGAACAGATCACCGTGACGCCGGA 290 ****************** ** ************************************** consensus_712#0 AGATTTGACCCGCTATCTCGATCAGCAGCCACCGCTTGCGCCGGAACGCAGGACAAAAGA 599 consensus_712#1 AGATTTGACCCGCTATCTCGATCAGCAGCCACCGCTCGCGCCGGAACGCAGAACCAAAGA 350 ************************************ ************** ** ***** consensus_712#0 GCCGACAATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCG 659 consensus_712#1 GCCGACGATGCACGTGCAGCTGCGCGTCCCACCGATCGAGACGCGGAACGATCTGAATCG 410 ****** ***************************************************** consensus_712#0 CATCTCGTCCAATCGCAAATCGTCCGACATCTTT 693 consensus_712#1 CATCTCGTCCAATCGCAA---------------- 428 ****************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||