These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7131#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1039 fasta sequence [CCGGGCGAAAGACAAGGCCGCAATCACTCCCGGCACTGACATCGACAAGTCTGTTAGAAAGGATGCTTCCGAGGAGCACCCCAAATCCGCCGTCATACAAAACCAGCCACCCGCTGACATTACCAAGCCAAACAAGGAGGCAGAACAAGGAAAAGACAGCGATCTGGCCGATGCTGGTGCTGCATTAAATACGGCAGAAAAAGCACATAAAGAATCAGTGCCGAGCCCAGTGCAGTTGCCCCACCAGAAACCAGTTCTACCGGAGAAGAGCGACGGCGATCTAGAACAACAGCAAGGTGGATTGGACGGTGCTGTCGCAGGTGATGTGGCTCCATTCGATGACGAACCCAAGCAGGCGGCCGAACAGGATGCCAAAGGTGGCACTCCGCCGGTGTATGAAACTTCGGACGAATCTGAGGGCATCGCTTCCGCTGAAGACGTCAACGAAAACGGAGACGACTTGGAGCTTAACGGGTTTCAACCCGTAGGTAAGCCGGATTTGCAAGAGAAAGTAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAACAAATCGAAGCTGCT-GGCCCT-GGTCGTCGAAGGACGACGGACGAGTAGC-GGGC-GGGGTGGGTTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGAGGAAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAAAGACACTATAGAGCCTTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCCCCTTCCCAGGTTGTGTGGGANGGGTTCTGTGTAAATATCTTCCATTCATCGTTCCTTACGTTTCATTCAGTAGGCGCCTTACTGAAGCGATCCCCCGAAGCCTTACTAGCCCGCCTACTCTGTCTGCACGCGGTAGCAAC] [+] EMBL BM578254 [CCGGGCGAAAGACAAGGCCGCAATCACTCCCGGCACTGACATCGACAAGTCTGTTAGAAAGGATGCTTCCGAGGAGCACCCCAAATCCGCCGTCATACAAAACCAGCCACCCGCTGACATTACCAAGCCAAACAAGGAGGCAGAACAAGGAAAAGACAGCGATCTGGCCGATGCTGGTGCTGCATTAAATACGGCAGAAAAAGCACATAAAGAATCAGTGCCGAGCCCAGTGCAGTTGCCCCACCAGAAACCAGTTCTACCGGAGAAGAGCGACGGCGATCTAGAACAACAGCAAGGTGGATTGGACGGTGCTGTCGCAGGTGATGTGGCTCCATTCGATGACGAACCCAAGCAGGCGGCCGAACAGGATGCCAAAGGTGGCACTCCGCCGGTGTATGAAACTTCGGACGAATCTGAGGGCATCGCTTCCGCTGAAGACGTCAACGAAAACGGAGACGACTTGGAGCTTAACGGGTTTCAACCCGTAGGTAAGCCGGATTTGCAAGAGAAAGTAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGC ] [+] EMBL BM578213 [ ccGAGAAGAGCGACGGCGATCTAGAACAACAGCAAGGTGGATTGGACGGTGCTGTCGCAGGTGATGTGGCTCCATTCGATGACGAACCCAAGCAGGCGGCCGAACAGGATGCCAAAGGTGGCACTCCGCCGGTGTATGAAACTTCGGACGAATCTGAGGGCATCGCTTCCGCTGAAGACGTCAACGAAAACGGAGACGACTTGGAGCTTAACGGGTTTCAACCCGTAGGTAAGCCGGATTTGCAAGAGAAAGTAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAACAAATCGAAGCTGCTGGGCCCTGGGTCGTCGAAGGACGACGGACGAGTAGCGGGGCGGGGGTGGGTTCAGCAAGGGACGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGAGGAAGCAATTACATCGGGCAAGGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAAAGACACTATAGAGCATTGCCTGCGTGT ] [+] EMBL BX625382 [ TTGGACGGTGCTGTCGCAGGTGATGTGGCTCCATTCGATGACGAACCCAAACAGGCGGCCGAACAGGATGCCAAAGGTGGCACTCCGCCGGTGTATGAAACTTCGGACGAATCTGAGGGCATCGCTTCTGCTGAAGACGTCAACGAAAACGGAGACGACTTGGAGCTTAACGGGTTTCAACCCGTGGGTAAGCCGGATTTGCAAGAGAAAGCAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAACAAATCGAAGCTGCT GGCCCT GGTCGTCGAAGGTCGACGGACGAGTAGC GGGC GGGGTGGATTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGAGGAAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAAAGACACTATAGAGCCTTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCCCCTTCCCAGGTTGTGTGGGANGGGTTCTGTGTAAATATCTTCCATTCATCGTTCCTTACGTTTCATTCAGTAGGCGCCTTACTGAAGCG ] [+] EMBL BX625362 [ AGGTGATGTGGCTCCATTCGATGACGAACCCAAACAGGCGGCCGAACAGGATGCCAAAGGTGGCACTCCGCCGGTGTATGAAACTTCGGACGAATCTGAGGGCATCGCTTCTGCTGAAGACGTCAACGAAAACGGAGACGACTTGGAGCTTAACGGGTTTCAACCCGTGGGTAAGCCGGATTTGCAAGAGAAAGCAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAACAAATCGAAGCTGCT GGCCCT GGTCGTCGAAGGTCGACGGACGAGTAGC GGGC GGGGTGGATTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGAGGAAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAAAGACACTATAGAGCCTTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCCCCTTCCCAGGTTGTGTGGGAGGGGTTCTGTGTAAATATCTTCCATTCATCGTTCCTTACGTTTCATTCAGTAGGCGCCTTACTGAAGCGATCCCCCGAAGCCTTACTAGCCCGCCTACTCTGTCTGCACGCGGTAGCAAC] [+] EMBL BX613746 [ gGCGCGACGTCGCATATCACAACAAATCGAAGCGGCT GGCCCT GGTCGTCGAAGGACGACGGACGAGTAGC GGGC GGGGGGGGTCCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACGGGACTCCAACCTGGAAGAAGCAATAACATCGG ] consensusID : consensus_7131#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 485 fasta sequence [ATCCCCGAGGNCAAAACGGAGACGACTTGGAGCTTACGGGTTTCAACCCGTGGGTAAGCCGGATTTGCAAGAGAAAGCAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAACAAATCGAAGCTGCTGGCCCTGGTCGTCGAAGGACGACGGACGAGTAGCGGGCGGGGTGGGTTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGGAGGAAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAAAGACACTATAGAGCATTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCCCCTTCCCAGGTTGAGTGGGA] [+] EMBL AL932925 [ATCCCCGAGGNCAAAACGGAGACGACTTGGAGCTTACGGGTTTCAACCCGTGGGTAAGCCGGATTTGCAAGAGAAAGCAAAACCAGACGAACTGACGGACAGTTCAAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTTTTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAACAAATCGAAGCTGCTGGCCCTGGTCGTCGAAGGACGACGGACGAGTAGCGGGCGGGGTGGGTTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGGAGGAAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAAAGACACTATAGAGCATTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCCCCTTCCCAGGTTGAGTGGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7131#0 CCGGGCGAAAGACAAGGCCGCAATCACTCCCGGCACTGACATCGACAAGTCTGTTAGAAA 60 consensus_7131#1 ------------------------------------------------------------ consensus_7131#0 GGATGCTTCCGAGGAGCACCCCAAATCCGCCGTCATACAAAACCAGCCACCCGCTGACAT 120 consensus_7131#1 ------------------------------------------------------------ consensus_7131#0 TACCAAGCCAAACAAGGAGGCAGAACAAGGAAAAGACAGCGATCTGGCCGATGCTGGTGC 180 consensus_7131#1 ------------------------------------------------------------ consensus_7131#0 TGCATTAAATACGGCAGAAAAAGCACATAAAGAATCAGTGCCGAGCCCAGTGCAGTTGCC 240 consensus_7131#1 ------------------------------------------------------------ consensus_7131#0 CCACCAGAAACCAGTTCTACCGGAGAAGAGCGACGGCGATCTAGAACAACAGCAAGGTGG 300 consensus_7131#1 ------------------------------------------------------------ consensus_7131#0 ATTGGACGGTGCTGTCGCAGGTGATGTGGCTCCATTCGATGACGAACCCAAGCAGGCGGC 360 consensus_7131#1 ------------------------------------------------------------ consensus_7131#0 CGAACAGGATGCCAAAGGTGGCACTCCGCCGGTGTATGAAACTTCGGACGAATCTGAGGG 420 consensus_7131#1 ------------------------------------------------------------ consensus_7131#0 CATCGCTTCCGCTGAAGACGTCAACGAAAACGGAGACGACTTGGAGCTTAACGGGTTTCA 480 consensus_7131#1 -------ATCCCCGAGGNC-------AAAACGGAGACGACTTGGAGCTTA-CGGGTTTCA 45 * * ** * * ************************ ********* consensus_7131#0 ACCCGTAGGTAAGCCGGATTTGCAAGAGAAAGTAAAACCAGACGAACTGACGGACAGTTC 540 consensus_7131#1 ACCCGTGGGTAAGCCGGATTTGCAAGAGAAAGCAAAACCAGACGAACTGACGGACAGTTC 105 ****** ************************* *************************** consensus_7131#0 AAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTT 600 consensus_7131#1 AAAGGCGAGTGACATCGTGCCGGGTGCGGATCCATTTTACGAGCAGAAGGATTCGAACTT 165 ************************************************************ consensus_7131#0 TTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAA 660 consensus_7131#1 TTTCTCCTACTTCCTGTTTGCCATGTTCAGCTGCGCCATGCTCTACGTCGCATATCACAA 225 ************************************************************ consensus_7131#0 CAAATCGAAGCTGCTGGCCCTGGTCGTCGAAGGACGACGGACGAGTAGCGGGCGGGGTGG 720 consensus_7131#1 CAAATCGAAGCTGCTGGCCCTGGTCGTCGAAGGACGACGGACGAGTAGCGGGCGGGGTGG 285 ************************************************************ consensus_7131#0 GTTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGG-AGG 779 consensus_7131#1 GTTCAGCAAGGGGCGCAAACATACGGCCGCCTATCGCAAACTGGACTCCAACCTGGGAGG 345 ******************************************************** *** consensus_7131#0 AAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAA 839 consensus_7131#1 AAGCAATTACATCGGGCAACGGTTCTGGTGCACATTCGTCTTCACAGATCATCTACTAAA 405 ************************************************************ consensus_7131#0 AGACACTATAGAGCCTTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCC 899 consensus_7131#1 AGACACTATAGAGCATTGCCTGCGTGTGTATCTAAAGCGCTCATTCGTTCCCTTCGTCCC 465 ************** ********************************************* consensus_7131#0 CCTTCCCAGGTTGTGTGGGANGGGTTCTGTGTAAATATCTTCCATTCATCGTTCCTTACG 959 consensus_7131#1 CCTTCCCAGGTTGAGTGGGA---------------------------------------- 485 ************* ****** consensus_7131#0 TTTCATTCAGTAGGCGCCTTACTGAAGCGATCCCCCGAAGCCTTACTAGCCCGCCTACTC 1019 consensus_7131#1 ------------------------------------------------------------ consensus_7131#0 TGTCTGCACGCGGTAGCAAC 1039 consensus_7131#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||