These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7142#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1508 fasta sequence [CCGGTTTCGTATCCGTCAACGCACCGGTAAGATCGGCCGGCCTGAGAAAGGGCACGTAAGGTTTCCTTCCCTCTATATTTCCCCGTTTTCATTCGTCGCCTGCACGCTTAGTCATCGCTGCCCAAGCGGGCACCGTAATAGGATCCCGCCGTCTACCGACCGTTCCCGTTTTCGTAACCCGACGAGAGGAGCTACCTGAAGCAAAAAAAGAGGGGGAGAGGGCGTGCTGCTTATAATACAGTCACAGTGGCGAAAAGTAAAAGCAAGGAAAAGAAAAGGGAGCGAGAGCAAAGCCGAAAGCAAACACCACCACCGAGCCCGAAAAAACATGGCTAAGCAAATCGGCACCGGACGGGCTGGAGGAGAAGACCGACTGATAACGCATTATACTCACCATCACCGTCGCTGCAGATCGCTCATCAGTAGGGTGGCATTAGTCGTGTTGTGTTTTGCGCTCGCCGCTAATCAATACCAGTCGGGATCGGGGACAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAAGTACCACCACACCGCCCGTACAAGTGACCCGCTGGCTGGGGAAGTTATCCCGCTACGTACAGTTTCGCGGCGGAAAGACACCGTTAACCTGCCAGGGAATGAT-GGAAGAAGGT-GGACCACCTTCGGAGAGTACGCTGATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTTCGCTTTCCAACGCCCGCCGAAGTGATCGACTATCATGTGAAGTTTGTAAAAAGTGAAAGCGACAAGAACAGGGAGCAGCTGGAAACGCTGCTGGACGTCCCGTACGGCAGTGGCGATCGGGACAAGGTCGACATTTACGGTGAAAATCTGCCCCCGGATGCACCGCTGTTTGTGTACGTGCACGGTGGCTACTGGCAGATGCTGGAGAAGGAAACGTCCGCCTATCCGGCGAAGCCGCTCGTCGACCGTGGCGTGCGCGTGATGATCGTGGGCTACGAGCTGTGCCCGGAGGTAACGCTGGAGGAGCTGGTACGGCAGATGAAGGCGGCCGGAGAGTTTGTGCTGAACTATGCCACCGAAAATGGTGTCCGACACATCTCGATCGCGGGCCATTCGGCTGGTGCTCACCTGATCGCTAGCATGCTGGACCGGCCGTTCATGGATGCGGTTGGCGAGGAGCTTGCCCTGCTCAAGGATGTGTATCTCATCTCGGGCGTTTACAATGTGCAGGAGCTACGCTACACGAAGAGTGTGAACAAGGACAATCTGCTTGGTATCAATGATGCGAATGCGAAATCGCTATCCCCGCTGTACGCTAGCTACGAGCATCTGCGACCGATTGTCGAGCAGCAACAGGGTGGAGCGCTACGGTTTCACGTGTACGTTGCCGAGCATGATAGTGATGTGTTTCGTGAGATGGCCGTTAAGATGAGTGAACTGTTGCGATCTTACGGGATGCGGTGCGATCTGAGCGTGCTGCCCGGGCTCGATCACTTTGATATAGTGGAAAAGCTTGCCTCCGCTGACC] [+] EMBL BM598699 [CCGGTTTCGTATCCGTCAACGCACCGGTAAGATCGGCCGGCCTGAGAAAGGGCACGTAAGGTTTCCTTCCCTCTATATTTCCCCGTTTTCATTCGTCGCCTGCACGCTTAGTCATCGCTGCCCAAGCGGGCACCGTAATAGGATCCCGCCGTCTACCGACCGTTCCCGTTTTCGTAACCCGACGAGAGGAGCTACCTGAAGCAAAAAAAGAGGGGGAGAGGGCGTGCTGCTTATAATACAGTCACAGTGGCGAAAAGTAAAAGCAAGGAAAAGAAAAGGGAGCGAGAGCAAAGCCGAAAGCAAACACCACCACCGAGCCCGAAAAAACATGGCTAAGCAAATCGGCACCGGACGGGCTGGAGGAGAAGACCGACTGATAACGCATTATACTCACCATCACCGTCGCTGCAGATCGCTCATCAGTAGGGTGGCATTAGTCGTGTTGTGTTTTGCGCTCGCCGCTAATCAATACCAGTCGGGATCGGGGACAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAAGTACGACCACACCGCCCGTACAAGTGACCCGCTGGCTGGGGAAGTTATCCCGCTACGTACAGTTTCGCGGCGGAAAGACACCGTTAACCTGCCAGGGAATGATGGGAAGAAGGTGGGACCACC ] [+] EMBL BM584234 [ ccgGCTGCCGAAGCGGGAACCGTAATAGGATCCCGCCGTCTACCGACCGTTCCTGTGTTCGTAACCCGACGAAAGGAGCTACCTGAGGAAACACGCAACGGGGAGAGGGCGTGCTGCTTATAATACAGTCACAGTGGCGAAAAGCAAAAGCAAGGAAAAGAAAAGGGAGCGAGAGCAAAGCCGAAAGCAAACACCGCCACCGAGCCCGAAAAAACATGGCTAAGCAAATCGGCATCGGACGGGCTGGAGGAGAAGACGGACTGATAACGCATCATATTCAACATCACCGTCGCTGCAGATCGCTCATCAGTACGGCGGTATTAGTCG TGTGTTTTGCGCTCGCCGCTAATCAATACCAGTCGGGATCGGGGACAGT T GT AGCAGCAGCAGCAGCAGCAAGTACCACCACACCGCCCGTACAAGTGACCCGCTGGCTGGGGAAGTTATCCCGCTACGTAAAATTTCGCGGCGGAAAGACACCGTTAACCTGCCAGGGAATGAT GGAAGAAGGC GGACCACCTTCGGAGAGTACGCTGATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTTCGCTTTCCAACGCCCGCCGAAGTGATCGACTTTCATGTGAAGTTTGTAAAAAGTGAAAGCGACAAGAACAGGGAGCAGCTGGAAACGCTGCTGGACGTCCCGTACGGCAGTGGCGATCGG ] [+] EMBL BX606374 [ ATCGGGGACAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAAGTACCACCACACCGCCCGTACAAGTGACCCGCTGGCTGGGGAAGTTATCCCGCTACGTACAGTTTCGCGGCGGAAAGACACCGTTAACCTGCCAGGGAATGAT GGAAGAAGGT GGACCACCTTCGGAGAGTACGCTGATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTTCGCTTTCCAACGCCCGCCGAAGTGATCGACTATCATGTGAAGTTTGTAAAAAGTGAAAGCGACAAGAACAGGGAGCAGCTGGAAACGCTGCTGGACGTCCCGTACGGCAGTGGCGATCGGGACAAGGTCGACATTTACGGTGAAAATCTGCCCCCGGATGCACCGCTGTTTGTGTACGTGCACGGTGGCTACTGGCAGATGCTGGAGAAGGAAACGTCCGCCTATCCGGCGAAGCCGCTCGTCGACCGTGGCG ] [+] EMBL BX628773 [ CCCGTACAAGTGACCCGCTGGCTGGGGAAGTTATCCCGCTACGTACAGTTTCGCGGCGGAAAGACACCGTTAACCTGCCAGGGAATGAT GGAAGAAGGT GGACCACCTTCGGAGAGTACGCTGATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTTCGCTTTCCAACGCCCGCCGAAGTGATCGACTATCATGTGAAGTTTGTAAAAAGTGAAAGCGACAAGAACAGGGAGCAGCTGGAAACGCTGCTGGACGTCCCGTACGGCAGTGGCGATCGGGACAAGGTCGACATTTACGGTGAAAATCTGCCCCCGGATGCACCGCTGTTTGTGTACGTGCACGGTGGCTACTGGCAGATGCTGGAGAAGGAAACGTCCGCCTATCCGGCGAAGCCGCTCGTCGACCGTGGCGTGCGCGTGATGATCGTGGGCTACGAGCTGTGCCCGGAGGTAACGCTGGAGGAGCTGGTACGGCAGATGAAGGCGGCCGGAGAGTTTGTGCTGAACTATGCCACCGAAAATGGTGTCCGACACATCTCGATCGCGGGCCATTCGGCTGGTGCTCACCTGATCGCTAGCATGCTGGACCGGCCGTTCATGGAT ] [+] EMBL BX624565 [ GAAGTGATCGACTATCATGTGAAGTTTGTAAAAAGTGAAAGCGACAAGAACAGGGAGCAGCTGGAAACGCTGCTGGACGTCCCGTACGGCAGTGGCGATCGGGACAAGGTCGACATTTACGGTGAAAATCTGCCCCCGGATGCACCGCTGTTTGTGTACGTGCACGGTGGCTACTGGCAGATGCTGGAGAAGGAAACGTCCGCCTATCCGGCGAAGCCGCTCGTCGACCGTGGCGTGCGCGTGATGATCGTGGGCTACGAGCTGTGCCCGGAGGTAACGCTGGAGGAGCTGGTACGGCAGATGAAGGCGGCCGGAGAGTTTGTGCTGAACTATGCCACGGAAAATGGTGTCCGACACATTTCGATCGCGGGCCATTCGGCTGGTGCTCACCTGATCGCTAGCATGCTGGACCGGCCGTTCATGGATGCGGTTGGCGAGGAGCTTGCCCTGCTCAAGGATGTGTATCTCATCTCGGGCGTTTACAATGTGCAGGAGCTACGCTACACGAAGAGTGTGAACAAGGACAATCTGCTTGGTATCAATGATGCGAATGCGAAATCGCTATCCCCGCTGTACGCTAGCTACGAGCATCTGCGACCGATTGTCGAGCAGCAACAGGGTGGAGCGCTACGGTTTCACGTGTACGTTGCCGAGCATGATAGTGATGTGTTTCGTGAGATGGCCGTTAAGATGAGTGAACTGTTGCGATCTTACGGGATGCGGTGCGATCTGAGCGTGCTGCCCGGGCTCGATCACTTTGATATAGTGGAAAAGCTTGCCTCCGCTGACC] consensusID : consensus_7142#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [AGATCCCCCGAGGTTAAACGTCCGTACAGTGACCGCTGGCTGGGGAAGTTATTCCGNTACGTACAGGTACGCGGCGTGAAAGACACCGTTAACCTGCCAGTGTAATGATGGAAGAAGGCGGACCACCTTCGGAGAGTACGCTGATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTNCGCTTTCCAACGCCCGCCGAAGTGATCTGACTATACATAGTGAACGTTTGTNAAAAGTTGAAATGCTGANAAAGAACAGTGCATGCATGCTGGAAACGCCTTGGCTGGGACGATTCCCCCTGGTACCGAGCACGCTGGCAGAATCTGGNGACAAAGGGTCGACAGTTTATACGTGTAGCAGAAATCTTGGCTCCCCGTGATAGCACCTGNGTAGTTATAGTTGTTACGTAGCGACGGTTGGCTANACTAGGCAGTATTGCTAGGAGTAAGTGCAAGACGTCGCCTATACGCG] [+] EMBL AL933244 [AGATCCCCCGAGGTTAAACGTCCGTACAGTGACCGCTGGCTGGGGAAGTTATTCCGNTACGTACAGGTACGCGGCGTGAAAGACACCGTTAACCTGCCAGTGTAATGATGGAAGAAGGCGGACCACCTTCGGAGAGTACGCTGATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTNCGCTTTCCAACGCCCGCCGAAGTGATCTGACTATACATAGTGAACGTTTGTNAAAAGTTGAAATGCTGANAAAGAACAGTGCATGCATGCTGGAAACGCCTTGGCTGGGACGATTCCCCCTGGTACCGAGCACGCTGGCAGAATCTGGNGACAAAGGGTCGACAGTTTATACGTGTAGCAGAAATCTTGGCTCCCCGTGATAGCACCTGNGTAGTTATAGTTGTTACGTAGCGACGGTTGGCTANACTAGGCAGTATTGCTAGGAGTAAGTGCAAGACGTCGCCTATACGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7142#0 CCGGTTTCGTATCCGTCAACGCACCGGTAAGATCGGCCGGCCTGAGAAAGGGCACGTAAG 60 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 GTTTCCTTCCCTCTATATTTCCCCGTTTTCATTCGTCGCCTGCACGCTTAGTCATCGCTG 120 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 CCCAAGCGGGCACCGTAATAGGATCCCGCCGTCTACCGACCGTTCCCGTTTTCGTAACCC 180 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 GACGAGAGGAGCTACCTGAAGCAAAAAAAGAGGGGGAGAGGGCGTGCTGCTTATAATACA 240 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 GTCACAGTGGCGAAAAGTAAAAGCAAGGAAAAGAAAAGGGAGCGAGAGCAAAGCCGAAAG 300 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 CAAACACCACCACCGAGCCCGAAAAAACATGGCTAAGCAAATCGGCACCGGACGGGCTGG 360 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 AGGAGAAGACCGACTGATAACGCATTATACTCACCATCACCGTCGCTGCAGATCGCTCAT 420 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 CAGTAGGGTGGCATTAGTCGTGTTGTGTTTTGCGCTCGCCGCTAATCAATACCAGTCGGG 480 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 ATCGGGGACAGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAAGTACCACCACACCGCCCGT 540 consensus_7142#1 ------------------------------AGATCCCCCGAG----GTTAAAC-GTCCGT 25 ** * * ** * ** * **** consensus_7142#0 ACAAGTGACCCGCTGGCTGGGGAAGTTATCCCGCTACGTACAGTTTCGCGGCG-GAAAGA 599 consensus_7142#1 ACA-GTGACC-GCTGGCTGGGGAAGTTATTCCGNTACGTACAGGTACGCGGCGTGAAAGA 83 *** ****** ****************** *** ********* * ******* ****** consensus_7142#0 CACCGTTAACCTGCCAGGG-AATGATGGAAGAAGGTGGACCACCTTCGGAGAGTACGCTG 658 consensus_7142#1 CACCGTTAACCTGCCAGTGTAATGATGGAAGAAGGCGGACCACCTTCGGAGAGTACGCTG 143 ***************** * *************** ************************ consensus_7142#0 ATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTTCGCTTTCCAACGCCCGCC 718 consensus_7142#1 ATCACGTGGGAAAAGCAGTACTCCCCATCGGCGTGGAGCGTNCGCTTTCCAACGCCCGCC 203 ***************************************** ****************** consensus_7142#0 GAAGTGATC-GACTAT-CAT-GTGAA-GTTTGTAAAAAGTGAAAGCGACAAGAACAGGGA 774 consensus_7142#1 GAAGTGATCTGACTATACATAGTGAACGTTTGTNAAAAGTTGAAATGCTGANAA---AGA 260 ********* ****** *** ***** ****** ****** ** * * ** ** consensus_7142#0 GCAGCTGGAAACGCTGCTGGACGTCCCGTACGGCAGTGGCGATCGGGACAAGGTCGACAT 834 consensus_7142#1 ACAG-TGCATGCA-TGCTGGAAACGCCTT--GGCTGGGACGATTCCCCCTGGTACCGAGC 316 *** ** * * ******* ** * *** * * **** * * * consensus_7142#0 TTACGGTGAAAATCTGCCCCCGGATGCACCGCTGTTTGTGTACGTGCACGGTGGCTACTG 894 consensus_7142#1 ACGCTGGCAGAATCTGGNGACAAAGGGTCGACAGTTTA--TACGTGTAGCAGAAATCTTG 374 * * * ****** * * * * * **** ****** * * ** consensus_7142#0 GCAGATGCTGGAGAAGGAAACGTCCGCCTATCCGGCGAAGCCGCTCGTCGACCGTGGCGT 954 consensus_7142#1 GC---TCCCCGTGAT---AGCACCTGNGTAGTTATAGTTGTTACGTAGCGACGGTTGGCT 428 ** * * * ** * * * * ** * * * **** ** * * consensus_7142#0 GCGCGTGATGATCGTGGGCTACGAGCTGTGCCCGGAGGTAACGCTGGAGGAGCTGGTACG 1014 consensus_7142#1 ANACTAGGCAGTATT--GCTAGGAGTAAGTGCAAGACGTCGC-CTATACGCG-------- 477 * * * * **** *** * ** ** * ** * * * consensus_7142#0 GCAGATGAAGGCGGCCGGAGAGTTTGTGCTGAACTATGCCACCGAAAATGGTGTCCGACA 1074 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 CATCTCGATCGCGGGCCATTCGGCTGGTGCTCACCTGATCGCTAGCATGCTGGACCGGCC 1134 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 GTTCATGGATGCGGTTGGCGAGGAGCTTGCCCTGCTCAAGGATGTGTATCTCATCTCGGG 1194 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 CGTTTACAATGTGCAGGAGCTACGCTACACGAAGAGTGTGAACAAGGACAATCTGCTTGG 1254 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 TATCAATGATGCGAATGCGAAATCGCTATCCCCGCTGTACGCTAGCTACGAGCATCTGCG 1314 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 ACCGATTGTCGAGCAGCAACAGGGTGGAGCGCTACGGTTTCACGTGTACGTTGCCGAGCA 1374 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 TGATAGTGATGTGTTTCGTGAGATGGCCGTTAAGATGAGTGAACTGTTGCGATCTTACGG 1434 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 GATGCGGTGCGATCTGAGCGTGCTGCCCGGGCTCGATCACTTTGATATAGTGGAAAAGCT 1494 consensus_7142#1 ------------------------------------------------------------ consensus_7142#0 TGCCTCCGCTGACC 1508 consensus_7142#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||