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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 804 fasta sequence
[AGGCCAGAATCGGCACGATGGCGGCACGGAAAATCACGAATGTGCTAACAAAACAAAGCGAAACAGGAAGAAAACCCCGTTCAGTGTGATTCAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTCGAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTGACAGCTATACAGTATCATGTTTGGCAAGGTGCTACAGCAGCAGGAACGCTCAGCATCCAAGACCGGACAACTCACGATTCAGCAATCGTACTCATCACGCCGCAGCGCGCGACTCATGTGTCAGTGAGGAGTCACCGTCAGAACAGCGCCACACGAACCAATCAATCAACAGATCAGAATCAAACTAGCGCGAATTCAAGCGACCCACCCACAAGCGCCGCGTGACGAAGGAAGAGAGGAAAGCAATAGAGCAAACAAAGGGGTAGGAGTTAAGGGTACGAGTGAGGCTAGATTTGTTAAGGTTGCCCGAAGGCAACAATAACAGGTGCTACGGTGTGCGGGTGAAGTCCTACACGTTCACGCAGGTCAACATTCTGTGCTCTGGACGGTGTTAGAGATACCGAGGATATCCCAGTAAGCGGGTGTTACGTACGGAAGCGGAACTTCTGCTTTGACTGCACGTAGTTGTGTCGTCCATTTGCCGGGGGAATTTACCCCAAACTTGGGCTATTTTCGGTTCCCAATCCGGTTACAGNTGCGGGTGGTNCAGTTGCCGTGTGGNGGAATGTTGTACGAGATACACAAAGGGGAAAGGGA]
[+] EMBL BX467782 [AGGCCAGAATCGGCACGATGGCGGCACGGAAAATCACGAATGTGCTAACAAAACAAAGCGAAACAGGAAGAAAACCCCGTTCAGTGTGATTCAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTCGAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTGACAGCTATACAGTATCATGTTTGGCAAGGTGCTACAGCAGCAGGAACGCTCAGCATCCAAGACCGGACAACTCACGATTCAGCAATCGTACTCATCACGCCGCAGCGCGCGACTCATGTGTCAGTGAGGAGTCACCGTCAGAACAGCGCCACACGAACCAATCAATCAACAGATCAGAATCAAACTAGCGCGAATTCAAGCGACCCACCCACAAGCGCCGCGTGACGAAGGAAGAGAGGAAAGCAATAGAGCAAACAAAGGGGTAGGAGTTAAGGGTACGAGTGAGGCTAGATTTGTTAAGGTTGCCCGAAGGCAACAATAACAGGTGCTACGGTGTGCGGGTGAAGTCCTACACGTTCACGCAGGTCAACATTCTGTGCTCTGGACGGTGTTAGAGATACCGAGGATATCCCAGTAAGCGGGTGTTACGTACGGAAGCGGAACTTCTGCTTTGACTGCACGTAGTTGTGTCGTCCATTTGCCGGGGGAATTTACCCCAAACTTGGGCTATTTTCGGTTCCCAATCCGGTTACAGNTGCGGGTGGTNCAGTTGCCGTGTGGNGGAATGTTGTACGAGATACACAAAGGGGAAAGGGA]
consensusID : consensus_7150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 699 fasta sequence
[AGAATCCGCACGACCGATCGACGCTCTGCCGGGTGACTGGGGATTGGCTGCAGGCCGACTCGCTGAGCTAGGCCTATCGTTCCAGCGCCTATTGTT---CGTTCAGTGTGATTTAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTCGAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTGACAGCTATACAGTATCATGTTTGGCAA-GGTGCTACAGCAGCAGGAACGCTCAGCATCCAAGACCGGACAACTCACGATTCAGCAATCGTACTCATCACGCCGCAGCGCGCGACTCATGTGTCA-GTGAGGAGTCACCGTCAGAACAGCGCCACACGAACCAATCAATCAACAGATCAGAATCAAACTAGCGCGAATTCAAGCGACCAGCCCCA-CAAGCGCCGCGTGACGAAGGAAGAGAGGAAAGCAATAGAGCAAACAAAGGGGTAGGAGTTAAGGGTACGAGTGAGGCTAGATTTGTTAAGGTTGCCCGAAGGCAACAATAACAGGTGCTACGGTGTGCGGGTGAAGTCCTACACGTTCACGCAGGTCAACATTCTGTGCTCTGGACGGTGTTAGAGATACCGAGATATCCCAGTAAGCGGGTGTTACGTACGGAAGCGGAACTCTGCTTGCTGCGTAGTGTGTCGTCCATT]
[+] EMBL BX466603 [AGAATCCGCACGAGGTATCGACGCTCTGCCGGGTGACTGGGGATTGGCTGCAGGCCGACTCGCTGAGCTAGGCCTATCGTTCCAGCGCCTATTGTT CGTTCAGTGTGATTTAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTCGAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTGACAGCTATACAGTATCATGTTTGGCAAGGGTGCTACAGCAGCAGGAACGCTCAGCATCCAAGACCGGACAACTCACGATTCAGCAATCGTACTCATCACGCCGCAGCGCGCGACTCATGTGTCACGTGAGGAGTCACCGTCAGAACAGCGCCACACGAACCAATCAATCAACAGATCAGAATCAAACTAGCGCGAATTCAAGCGAGCAGNCCCANCAAGCGC ]
[+] EMBL BM595459 [ CCGATCGACGCTCTGCCGGGTGACTGGGGATTGGCTGCAGGCCGACTCGCTGAGCTAGGCCTATCGTTCCAGCGCCTATTGTTCAGCGTTCAGTGTGATTCAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTCGAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTGACAGCTATACAGTATCATGTTTGGCAA GGTGCTACAGCAGCAGGAACGCTCAGCATCCAAGACCGGACAACTCACGATTCAGCAATCGTACTCATCACGCCGCAGCGCGCGACTCATGTGTCA GTGAGGAGTCACCGTCAGAACAGCGCCACACGAACCAATCAATCAACAGATCAGAATCAAACTAGCGCGAATTCAAGCGACCCACCCCA CAAGCGCCGCGTGACGAAGGAAGAGAGGAAAGCAATAGAGCAAACAAAGGGGTAGGAGTTAAGGGTACGAGTGAGGCTAGATTTGTTAAGGTTGCCCGAAGGCAACAATAACAGGTGCTACGGTGTGCGGGTGAAGTCCTACACGTTCACGCAGGTCAACATTCTGTGCTCTGGACGGTGTTAGAGATACCGAGATATCCCAGTAAGCGGGTGTTACGTACGGAAGCGGAACTCTGCTTGCTGCGTAGTGTGTCGTCCATT]
[+] EMBL AL933424 [ ccagataACGCTCTGCCGGGTGACTGGGGATT GCTGCAGGCCGACTCGCTGAGCTAGGCCTATCGTTCCAGCGCCTATTGTT CGTTCAGTGTGATTTAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTCGAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTGACAGCTATACAGTATCATGTTTGGCAA GGTGCTACAGCAGCAGGAACGCTCAGCATCCAAGACCGGACAACTCACGATTCAGCAATCGTACTCATCACGCCGCAGCGCGCGACTCATGTGTCA GTGAGGAGTCACCGTCAGAACAGCGCCACACGAACCAATCAATCAACAGATCAGAATCAAACTAGCGCGAATTCAAGCGACCA CCCCA CAAGCGCCGCGTGACGAAGGAAGAGAGGAAAGC ]
consensusID : consensus_7150#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence
[CCGGCGGGGCCCTAGCAGCAGTTGTGCAATCGACGCTCTGCCGGGTGACTGGGGATTGGCTGCAGGCCGACTCGCTGAGCTAGGCCTATCGTTCCAGCGCCTATTGTTCGTTCAGTGTGATTCAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTCGAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTGACAGCTATACAGTATCATGTTTGGCAAGGTGCTACAGCAGCAGGAACGCTCAGCATCCAAGACCGGACAACTCACGATTCAGCAATCGTACTCATCACGCCGCAGCGCGCGACTCATGTGTCAGTGAGGAGTCACCGTCAGAACAGCGCCACACGAACCAATCAATCAACAGATCAGAATCAAACTAGCGCGAATTCAAGCGACCCACCCCACAAGCGCCGCGTGACGAAGGAAGAGAGGAAAGCAATAGAGCAAACAAAGGGGTAGGAGTTAAGGGTACGAGTGAGGCTAGATTTGTTAAGGTTGCCCGAAGGCAACAATAACAGGTGCTACGGTGTGCGGGTGAAGTCCTACACGTTCACGCAGGTCAACATTCTGTGCTCTGGACGGTGTTAGAGATACCGAGATATCCCAGTAAGCGGGTGTTACGTACGGAAGCGGAACTCT]
[+] EMBL BM587375 [CCGGCGGGGCCCTAGCAGCAGTTGTGCAATCGACGCTCTGCCGGGTGACTGGGGATTGGCTGCAGGCCGACTCGCTGAGCTAGGCCTATCGTTCCAGCGCCTATTGTTCGTTCAGTGTGATTCAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTCGAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTGACAGCTATACAGTATCATGTTTGGCAAGGTGCTACAGCAGCAGGAACGCTCAGCATCCAAGACCGGACAACTCACGATTCAGCAATCGTACTCATCACGCCGCAGCGCGCGACTCATGTGTCAGTGAGGAGTCACCGTCAGAACAGCGCCACACGAACCAATCAATCAACAGATCAGAATCAAACTAGCGCGAATTCAAGCGACCCACCCCACAAGCGCCGCGTGACGAAGGAAGAGAGGAAAGCAATAGAGCAAACAAAGGGGTAGGAGTTAAGGGTACGAGTGAGGCTAGATTTGTTAAGGTTGCCCGAAGGCAACAATAACAGGTGCTACGGTGTGCGGGTGAAGTCCTACACGTTCACGCAGGTCAACATTCTGTGCTCTGGACGGTGTTAGAGATACCGAGATATCCCAGTAAGCGGGTGTTACGTACGGAAGCGGAACTCT]
consensusID : consensus_7150#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence
[TCTCCATACTCGCTAGAGCGTTCGATAGCCAGCCTCCGCCGCATGCAGTGTGCGAAATTCGTTCCGTAAAAAAACTATTCCTGCTTCAGGTAGTTGCTGCAGCTGCTGCAGGAACAGCAAAACGCGACCGTCCAGCGATGTAGGTTGTTCACGATCTGCTGACGGGAAGCATCGCGGAATTGATATCTCTAGTCAAGACCATCCCTCCCCCAGTTAGTGATAAGTGATAAGAGTTGTTAAGTTTTCTAATGTTATCTTAAAGGCGCGTAATCGTATGTGTGTGTTTCGTTGTGTGCGTGCGTGCGTGTGTTGAGAGCTGCTCGAAACGGATGTAAGCATACAATCAACACGGGGCTTTCGGATTCGATGGAACGACGATCGATTCAGCGTTCAGTGTGATTCAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTCGAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTGACAGCTATACAGTATCATGTTTGGCAAGGTGCTACAGCAGCAGGAACGCTCAGCATCCAAGACCGGACAACTCACGATTCAGCAATCGTACTCATCACGCCGCAGCGCGCGACTCATGTGTCAGTGAGGAGTC]
[+] EMBL BX619999 [TCTCCATACTCGCTAGAGCGTTCGATAGCCAGCCTCCGCCGCATGCAGTGTGCGAAATTCGTTCCGTAAAAAAACTATTCCTGCTTCAGGTAGTTGCTGCAGCTGCTGCAGGAACAGCAAAACGCGACCGTCCAGCGATGTAGGTTGTTCACGATCTGCTGACGGGAAGCATCGCGGAATTGATATCTCTAGTCAAGACCATCCCTCCCCCAGTTAGTGATAAGTGATAAGAGTTGTTAAGTTTTCTAATGTTATCTTAAAGGCGCGTAATCGTATGTGTGTGTTTCGTTGTGTGCGTGCGTGCGTGTGTTGAGAGCTGCTCGAAACGGATGTAAGCATACAATCAACACGGGGCTTTCGGATTCGATGGAACGACGATCGATTCAGCGTTCAGTGTGATTCAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTCGAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTGACAGCTATACAGTATCATGTTTGGCAAGGTGCTACAGCAGCAGGAACGCTCAGCATCCAAGACCGGACAACTCACGATTCAGCAATCGTACTCATCACGCCGCAGCGCGCGACTCATGTGTCAGTGAGGAGTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7150#1 -------------AGAATCCGCACGACCGATCGACGCTCTGCCGGGTGACTGGGGATTGG 47
consensus_7150#2 CCGGCGGGGCCCTAGCAGCAGT-TGTGCAATCGACGCTCTGCCGGGTGACTGGGGATTGG 59
consensus_7150#0 ----------------------------AGGCCAGAATCGGCACGATGGC---GGCACGG 29
consensus_7150#3 ----------------------------TCTCCATACTCGCTAGAGCGTTCGATAGCCAG 32
* * ** * *
consensus_7150#1 CTGCAGGCCGACTCGCTGAGCTAGGCCTAT-CGTTCCAGCGCCTATTGTTCGTTCAGTGT 106
consensus_7150#2 CTGCAGGCCGACTCGCTGAGCTAGGCCTAT-CGTTCCAGCGCCTATTGTTCGTTCAGTGT 118
consensus_7150#0 AAAATCACGAATGTGCT-AACAAAACAAAG-CGAAACAGGAAGAAAACCCCGTTCAGTGT 87
consensus_7150#3 CCTCCGCCGCATGCAGTGTGCGAAATTCGTTCCGTAAAAAAACTATTCCTGCTTCAG-GT 91
* * * * * * * * ***** **
consensus_7150#1 GATTTAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTC 166
consensus_7150#2 GATTCAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTC 178
consensus_7150#0 GATTCAGATTCGGAAGTGGAAATAAAACCGACCCACCAGCAACTAGCAGCCCCCATTCTC 147
consensus_7150#3 AGTT--GCTGCAGCTGCTGCAGGAACAGCAAAACGCGACCGTCCAGCGATGT-------- 141
** * * * * * * * ** * * * * * * * * ***
consensus_7150#1 GAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTG 226
consensus_7150#2 GAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTG 238
consensus_7150#0 GAGGCCAATTGTGGTGCGCGAACGTGGCAATAGGTGTGCTAGCAGAGCGACGCCAGTTTG 207
consensus_7150#3 -AGGTTGTTCACGATCTGC-----TGACGGGAAGCATCGCGGAATTGATATCTCTAGTCA 195
*** * * * ** ** * * * * * * * * * *
consensus_7150#1 ACAGCTATACAGTATCATGTTTGGCAAGGTGCTACAGCAGCAGGAACGCTCAGCATCCAA 286
consensus_7150#2 ACAGCTATACAGTATCATGTTTGGCAAGGTGCTACAGCAGCAGGAACGCTCAGCATCCAA 298
consensus_7150#0 ACAGCTATACAGTATCATGTTTGGCAAGGTGCTACAGCAGCAGGAACGCTCAGCATCCAA 267
consensus_7150#3 A-GACCATCCCTCCCCCAGTT------AGTGATAAGTGATAAGAGTTGTTAAGTTTTCTA 248
* * ** * * *** *** ** * ** * * ** * * *
consensus_7150#1 GACCGGACAACTCACGATTCAGCAATCGTACTCAT-CACGCCGCAGCGCGCGACTCATGT 345
consensus_7150#2 GACCGGACAACTCACGATTCAGCAATCGTACTCAT-CACGCCGCAGCGCGCGACTCATGT 357
consensus_7150#0 GACCGGACAACTCACGATTCAGCAATCGTACTCAT-CACGCCGCAGCGCGCGACTCATGT 326
consensus_7150#3 A---TGTTATCTTAAAGGCGCGTAATCGTATGTGTGTGTTTCGTTGTGTGCG-TGCGTGC 304
* * ** * * ******* * ** * * *** * **
consensus_7150#1 GTCAGTGAGGAGTCACCGTCAGAACAGCGCCACACGAACCAATCAATCAACAGATCAGAA 405
consensus_7150#2 GTCAGTGAGGAGTCACCGTCAGAACAGCGCCACACGAACCAATCAATCAACAGATCAGAA 417
consensus_7150#0 GTCAGTGAGGAGTCACCGTCAGAACAGCGCCACACGAACCAATCAATCAACAGATCAGAA 386
consensus_7150#3 GTGTGTTGAGAGCTGC--TCGAAACGG----ATGTAAGCATA-CAATCAACACGGGGCTT 357
** ** *** * ** *** * * * * * *********
consensus_7150#1 TCAAACTAGCGCGAATTCAAGCGACCAGCCCCACAAGCGCCGCGTGACGAAGGAAGAGAG 465
consensus_7150#2 TCAAACTAGCGCGAATTCAAGCGACCCACCCCACAAGCGCCGCGTGACGAAGGAAGAGAG 477
consensus_7150#0 TCAAACTAGCGCGAATTCAAGCGACCCACCC-ACAAGCGCCGCGTGACGAAGGAAGAGAG 445
consensus_7150#3 TCGGATTCGATGGAAC---GACGATCGATTCAGC--GTTCAGTGTGATTCAGATTCGGAA 412
** * * * *** *** * * * * * * **** ** **
consensus_7150#1 GAAAGCAATAGAGCAAACAAAGGGGTAGGAGTTAAGGGTACGAGTGAGGCTAGATTTGTT 525
consensus_7150#2 GAAAGCAATAGAGCAAACAAAGGGGTAGGAGTTAAGGGTACGAGTGAGGCTAGATTTGTT 537
consensus_7150#0 GAAAGCAATAGAGCAAACAAAGGGGTAGGAGTTAAGGGTACGAGTGAGGCTAGATTTGTT 505
consensus_7150#3 GTGGA-AATAAAACCGACCCA---CCAGCAACTAGCAGCCCCCATTCT-CGAGGCCAATT 467
* **** * * ** * ** * ** * * * * ** **
consensus_7150#1 AAGGTTGCCCGAAGGCAACAATAACAGGTGCTACGGTGTGCGGGTGAAGTCCTACACGTT 585
consensus_7150#2 AAGGTTGCCCGAAGGCAACAATAACAGGTGCTACGGTGTGCGGGTGAAGTCCTACACGTT 597
consensus_7150#0 AAGGTTGCCCGAAGGCAACAATAACAGGTGCTACGGTGTGCGGGTGAAGTCCTACACGTT 565
consensus_7150#3 GTGGT-GCGCGAACGTGGCAATAG-GTGTGCTA-GCAGAGCGACGCCAGTTTGACA--GC 522
*** ** **** * ***** ****** * * *** *** ***
consensus_7150#1 CACGCAGGTCAACATTCTGTGCTCTGG-ACGGTGTTAGAGATACCGAG-ATATCCCAGTA 643
consensus_7150#2 CACGCAGGTCAACATTCTGTGCTCTGG-ACGGTGTTAGAGATACCGAG-ATATCCCAGTA 655
consensus_7150#0 CACGCAGGTCAACATTCTGTGCTCTGG-ACGGTGTTAGAGATACCGAGGATATCCCAGTA 624
consensus_7150#3 TATACAGTATCATGTTTGGCAAGGTGCTACAGCAGCAGGAACGCTCAG--CATCCAAGAC 580
* *** * ** * ** ** * ** * * ** **** **
consensus_7150#1 AGCGGGTGTTACG-TACGGAAGCGGAACTC------TGCTTGCTGCGTAGTGTGTCGTCC 696
consensus_7150#2 AGCGGGTGTTACG-TACGGAAGCGGAACTC------T----------------------- 685
consensus_7150#0 AGCGGGTGTTACG-TACGGAAGCGGAACTTCTGCTTTGACTGCACGTAGTTGTGTCGTCC 683
consensus_7150#3 CGGACAACTCACGATTCAGCAATCGTACTC--------ATCACGCCGCAGCGCGCGACTC 632
* * *** * * * * * ***
consensus_7150#1 ATT--------------------------------------------------------- 699
consensus_7150#2 ------------------------------------------------------------
consensus_7150#0 ATTTGCCGGGGGAATTTACCCCAAACTTGGGCTATTTTCGGTTCCCAATCCGGTTACAGN 743
consensus_7150#3 ATGTGTCAGTGAGGAGTC------------------------------------------ 650
consensus_7150#1 ------------------------------------------------------------
consensus_7150#2 ------------------------------------------------------------
consensus_7150#0 TGCGGGTGGTNCAGTTGCCGTGTGGNGGAATGTTGTACGAGATACACAAAGGGGAAAGGG 803
consensus_7150#3 ------------------------------------------------------------
consensus_7150#1 -
consensus_7150#2 -
consensus_7150#0 A 804
consensus_7150#3 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||