These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1634 fasta sequence [CCGCCCACGCGTCCGAGCATATTGAAGATGGGTTAATATTTTGTTTTACAAGATTTACTTTACGTCGCATTGTTGGTATGCCTTTTTTGTGTTTCCTGGAACCGTAATACGCTTAGTAAGGTAAGGTTTTGAACGTCAACATGTTTACACAACCACTGTGTTTAGTCCATGATCTGGAACACAATTGACGGTGTCGAAAATTGTCATGAGAGAATTGGTGAAATAATGGAAAAGAACATTATCATCTGGAAAGTATAAGGTTATAATTATTGCTTTAAGTGCTTTGCAGTATATTACTAATACCAAATGCAAATGAGAGGGAGAAATAAATAAGTGAAAAATAACGAAGACAAACG--AAAAAAAAACATAATTCGAAAACAGCAATTGAGGCCTATTGACTATGCAAC--AAAAAAAGAAAAGAAAAACAAATGCATGGTTTAGAACACAGCACTTGTGTTATGCATTGACCAGAACAATGATTTAAAATTTTGTTCCGCTTGAGAGCTTGCTCGCTTATTATCCAGGATGGCGTTACGAGGTGATGCCTAAAATAATATACGAACGTGATAGACAGACAGGAATGGTTTTGGTACGAAAGAGCAGTCGTCGCTTCTTCTGCACACTATAGCAGTATCTTATGAAACGTTACACGTTATGAAACATTTATGTTAGTGTCGAATAAGTTGCTTGGAGCGTGCTGTTTTACCATGTGTGCGAGTATGTGTAGCCTTTTGAAAAGACGCTAATTGCGAACCAATCGTACTGCATCGGAAAAGATTATGCATTAGACACTACGCCTTCCTGTAAACGATCAGACGGTGTAGACACACGTACACGAAACGATCCAGGGATGTGGAAATGTTACCACTATATCGATTATTTGCATTTCGATAGAAGTTTGAAGATAGACCAGAGACAACATCAAAACAAAAATAAAATATAAATAAAAAGGGAGAGGGAAAGAAAAGTAAAGCAAACAAGCATGGCTACCCGCGTCGGTGTGACAAAAGAGTTCTTTGGAATGTGAGAAAATGTGTACGCTGAAAATGTATGTTGGGAAATACGGGAATAGAAATGTTAGTAGATAAACAAAAAAAAAACAAATAAACAAACAAAAAGATTGTTGAGCGACATGAGTAAAGTAAATTAATTTACAAACAATTGATATAAAAGAATATTAACAAAATACATCTATAATTGAATCAACAATCCAACCAACCAAGTGGAACACAGAAAACCAACCACAACGTTGCCCTCCCTGTTTTTCTCATCGTCGACAGAAAACAGGGGAGTGGGTGGCGTTTGTACAAAGCTAGGGCGAAGGAAAACACATGAAACAACTAGTACTCGTAGCTAAGAACCAATGAAGTTAGACTGGGTGAAAAGGGTTAAAAATGCAAGTAAAAAGTAAATTTTAAAATTATTTTATATTAACTTAAGTAAACCATACTAACACATTCTCACCACACAACACATAAACATACAAACCAAACAAACTTTGCTGAAACAATGCTGTAAGTAAATGCTGAAAAAAGTCATACACTTCACACGGCCAGAGGCTACATCCTTACTTCATGTTTTTTTACACACACTTTTACACATACACACACTTATACACAATTACACACACTAGA] [+] EMBL BM624563 [CCGCCCACGCGTCCGAGCATATTGAAGATGGGTTAATATTTTGTTTTACAAGATTTACTTTACGTCGCATTGTTGGTATGCCTTTTTTGTGTTTCCTGGAACCGTAATACGCTTAGTAAGGTAAGGTTTTGAACGTCAACATGTTTACACAACCACTGTGTTTAGTCCATGATCTGGAACACAATTGACGGTGTCGAAAATTGTCATGAGAGAATTGGTGAAATAATGGAAAAGAACATTATCATCTGGAAAGTATAAGGTTATAATTATTGCTTTAAGTGCTTTGCAGTATATTACTAATACCAAATGCAAATGAGAGGGAGAAATAAATAAGTGAAAAATAACGAAGACAAACGAAAAAAAAAAACATAATTCGAAAACAGCAATTGAGGCCTATTGACTATGCAAC AAAAAAAGAAAAGAAAAACAAATGCATGGTTTAGAACACAGCACTTGTGTTATGCATTGACCAGAACAATGATTTAAAATTTTGTTCCGCTTGAGAGCTTGCTCGCTTATTATCCAGGATGGCGTTACGAGGTGATGCCTAAAATAATATACGAACGTGATAGACAGACAGGAATGGTTTTGGTACGAAAGAGCAGTCGTCGCTTCTTCTGCACACTATAGCAGTATCTTATGAAACGTTACACGTTA ] [+] EMBL BM583455 [ ccgAACGAAGACAAACG AAAAAAAAACATAATTCGAAAACAGCAATTGAGGCCTATTGACTATGCAACAAAAAAAAAGAAAAGAAAAACAAATGCATGGTTTAGAACACAGCACTTGTGTTATGCATTGACCAGAACAATGATTTAAAATTTTGTTCCGCTTGAGAGCTTGCTCGCTTATTATCCAGGATGGCGTTACGAGGTGATGCCTAAAATAACATACGAACGTGATAGACAGACAGGAATGGTTTTGGTACGAAAGAGCAGTCGTCGCTTCTTCTGCACACTATAGCAGTATCTTATGAAACGTTACACGTTATGAAACATTTATGTTAGTGTCGAATAAGTTGCTTGGAGCGTGCTGTTTTACCATGTGTGCGAGTATGTGTAGCCTTTTGAAAAGACGCTAATTGCGAACCAATCGTACTGCATCGGAAAAGATTA ] [+] EMBL BX614470 [ ATGAAACATTTATGTTAGTGTCGAATAAGTTGCTTGGAGCGTGCTGTTTTACCATGTGTGCGAGTATGTGTAGCCTTTTGAAAAGACGCTAATTGCGAACCAATCGTACTGCATCGGAAAAGATTATGCATTAGACACTACGCCTTCCTGTAAACGATCAGACGGTGTAGACACACGTACACGAAACGATCCAGGGATGTGGAAATGTTACCACTATATCGATTATTTGCATTTCGATAGAAGTTTGAAGATAGACCAGAGACAACATCAAAACAAAAATAAAATATAAATAAAAAGGGAGAGGGAAAGAAAAGTAAAGCAAACAAGCATGGCTACCCGCGTCGGTGTGACAAAAGAGTTCTTTGGAATGTGAGAAAATGTGTACGCTGAAAATGTATGTTGGGAAATA ] [+] EMBL BX613373 [ GAAGTTTGAAGATAGACCAGAGACAACATCAAAACAAAAATAAAATATAAATAAAAAGGGAGAGGGAAAGAAAAGTAAAGCAAACAAGCATGGCTACCCGCGTCGGTGTGACAAAAGAGTTCTTTGGAATGTGAGAAAATGTGTACGCTGAAAATGTATGTTGGGAAATACGGGAATAGAAATGTTAGTAGATAAACAAAAAAAAAACAAATAAACAAACAAAAAGATTGTTGAGCGACATGAGTAAAGTAAATTAATTTACAAACAATTGATATAAAAGAATATTAACAAAATACATCTATAATTGAATCAACAATCCAACCAACCAAGTGGAACACAGAAAACCAACCACAACGTTGCCCTCCCTGTTTTTCTCATCGTCGACAGAAAACAGGGGAGTGGGTGGCGTTTGTACAAAGCTAGGGCGAAGGAAAACACATGAAACAACTAGTACTCGTAGCTAAGAACCAATGAAGTTAGACTGGGTGAAAAGGGTTAAAAATGCAAGTAAAAAGTAAATTTTAAAATTATTTTATATTAACTTAAGTAAACCATACTAACACATTCTCACCACACAACACATAAACATACAAACCAAACAAACTTTGCTGAAACAATGCTGTAAGTAAATGCTGAAAAAAGTCATACACTTCACACGGCCAGAGGCTACATCCTTACTTCATGTTTTTTTACACACACTTTTACACATACACACACTTATACACAATTACACACACTAGA] consensusID : consensus_7153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 704 fasta sequence [CCGGCAGAAGTGAGTTGTTTAAATGGTTGAATAACTGCACTATTGTTTTGTGCGGCAGCTTATGACTAAAATTGGCAGGTTGCAGAGAAAGTTGATGCAGTTTGTTGGATTGTTACCCCCACATTGTCTGATCCGTCCAGTGGAAAATGGATTAATTTACGCCAAATAACGGAAACTTAAACACAACCTTTTGCCACGACCGCTTGTGTGTGTGTATGTGTGTGTTTGCGCTGCCTTGGAACACTCTTCGAGTGATGAAGCATAACCAGGACCAACCAGTTTTTCCTCCCATTCGTACTTCAGCGGTATGTTCATGTTTAGTTTATTTGCGAACTGAAGATTATGCATCGCGTGATGAGTCGAACGCGCGAAATAAGCATATTGAAGATGGGTTAATATTTTGTTTTACAAGATTTACTTTACGTCGCATTGTTGGTATGCCTTTTTTGTGTTTCCTGGAACCGTAATACGCTTAGTAAGGTAAGGTTTTGAACGTCAACATGTTTACACAACCACTGTGTTTAGTCCATGATCTGGAACACAATTGACGGTGTCGAAAATTGTCATGAGAGAATTGGTGAAATAATGGAAAAGAACATTATCATCTGGAAAGTATAAGGTTATAATTATTGCTTTAAGTGCTTTGCAGTATATTACTAATACCAAATGCAAATGAGAGGGAGAAATAAATAAGTGAAAAATAA] [+] EMBL BM631817 [CCGGCAGAAGTGAGTTGTTTAAATGGTTGAATAACTGCACTATTGTTTTGTGCGGCAGCTTATGACTAAAATTGGCAGGTTGCAGAGAAAGTTGATGCAGTTTGTTGGATTGTTACCCCCACATTGTCTGATCCGTCCAGTGGAAAATGGATTAATTTACGCCAAATAACGGAAACTTAAACACAACCTTTTGCCACGACCGCTTGTGTGTGTGTATGTGTGTGTTTGCGCTGCCTTGGAACACTCTTCGAGTGATGAAGCATAACCAGGACCAACCAGTTTTTCCTCCCATTCGTACTTCAGCGGTATGTTCATGTTTAGTTTATTTGCGAACTGAAGATTATGCATCGCGTGATGAGTCGAACGCGCGAAATAAGCATATTGAAGATGGGTTAATATTTTGTTTTACAAGATTTACTTTACGTCGCATTGTTGGTATGCCTTTTTTGTGTTTCCTGGAACCGTAATACGCTTAGTAAGGTAAGGTTTTGAACGTCAACATGTTTACACAACCACTGTGTTTAGTCCATGATCTGGAACACAATTGACGGTGTCGAAAATTGTCATGAGAGAATTGGTGAAATAATGGAAAAGAACATTATCATCTGGAAAGTATAAGGTTATAATTATTGCTTTAAGTGCTTTGCAGTATATTACTAATACCAAATGCAAATGAGAGGGAGAAATAAATAAGTGAAAAATAA] [+] EMBL BX615477 [ aGCAGAAGTGAGTTGTTTAAATGGTTGAATAACTGCACTATTGTTTTGTGCGGCAGCTTATGACTAAAATTGGCAGGGTGCAGAGAAAGTGGATGCAGTTGGTTGGATAGTAACCCCCACATGGTCTGATCCGTCCAGTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7153#0 CCGCCCACGCGTCCGAGCATATTGAAGATGGGTTAATATTTTGTTTTACAAGATTTACTT 60 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 TACGTCGCATTGTTGGTATGCCTTTTTTGTGTTTCCTGGAACCGTAATACGCTTAGTAAG 120 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 GTAAGGTTTTGAACGTCAACATGTTTACACAACCACTGTGTTTAGTCCATGATCTGGAAC 180 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 ACAATTGACGGTGTCGAAAATTGTCATGAGAGAATTGGTGAAATAATGGAAAAGAACATT 240 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 ATCATCTGGAAAGTATAAGGTTATAATTATTGCTTTAAGTGCTTTGCAGTATATTACTAA 300 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 TACCAAATGCAAATGAGAGGGAGAAATAAATAAGTGAAAAATAACGAAGACAAACGAAAA 360 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 AAAAACATAATTCGAAAACAGCAATTGAGGCCTATTGACTATGCAACAAAAAAAGAAAAG 420 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 AAAAACAAATGCATGGTTTAGAACACAGCACTTGTGTTATGCATTGACCAGAACAATGAT 480 consensus_7153#1 ------------------------CCGGCAGAAGTGAGTTGT-TTAAATGGTTGAATAAC 35 * *** *** ** ** * * *** * consensus_7153#0 TTAAAATTTTGTTCCGCTTGAGAGCTTGCTCGCTTATTATCCAGGATGGCGTTACGAGGT 540 consensus_7153#1 T-GCACTATTGTTTTGTGCGGCAGCTT--------ATGACTAAAATTGGCAGGTTGCAGA 86 * * * ***** * * ***** ** * * **** * * consensus_7153#0 GATGCCTAAAATAATATACGAACGTGATAGACAGACAGGAATGGTTTTGGTACGAAAGAG 600 consensus_7153#1 GAAAGTTGATGCAGTTTGTTGGATTGTTACCCCCACATTGTCTGATCCG-TCCAGTGGAA 145 ** * * * * * ** ** * *** * * * * * ** consensus_7153#0 CAGTCGTCGCTTCTTCTGCACACTATAGCAGTATCTTATGAAACGTTACACGTTATGAAA 660 consensus_7153#1 AA----TGGATTAATTTACGCCAAATAACGGAAACTTAAACACAACCTTTTGCCACGAC- 200 * * * ** * * * * *** * * * **** * * * ** consensus_7153#0 CATTTATGTTAGTGTCGAATAAGT-TGCTTGGAGCGTGCTGTTTTACCATGTGTGCGAGT 719 consensus_7153#1 CGCTTGTGTGTGTGT---ATGTGTGTGTTTGCGCTGCCTTGGAACACTCTTCGAGTGATG 257 * ** *** **** ** ** ** *** * ** ** * * * ** consensus_7153#0 ATGTGTAGCCTTTTGAAAAGACGCTAATTGCGAACCAATCGTACTGCATCGGAAAAGATT 779 consensus_7153#1 AAGCATAACC---AGGACCAACCAGTTTTTCCTCCCATTCGTACTTCAGCGG-------T 307 * * ** ** * * ** ** * *** ******* ** *** * consensus_7153#0 ATGCATTAGACACTACGCCTTCCTGTAAACGATCAGACGGTGTAGACACACGTACACGAA 839 consensus_7153#1 ATGTTC---ATGTTTAGTTTATTTGCGAACTGA-AGATTATGCA---TCGCGTG-ATGAG 359 *** * * * * ** *** *** ** * * *** * ** consensus_7153#0 ACGATCCAGGGATGTGGAAATGTTACCACTATATCGATTATTTGCATTTCGATAGAAGTT 899 consensus_7153#1 TCGAACGCGCGAAATAAGCATATTGAAGATGGGTTAATATTTTGTTTTACAAGATTTACT 419 *** * * ** * ** ** * * ** **** ** * * * * consensus_7153#0 TGAAGATAGACCAGAGACAACATCAAAACAAAAATAAAATATAAATAAAAAGGGAGAGGG 959 consensus_7153#1 TTACGTCGCATTGTTGGTATGCCTTTTTTGTGTTTC--CTGGAACCGTAATACGCTTAGT 477 * * * * * * * * ** ** * * consensus_7153#0 AAAGAAAAGTAAAGCAAACAAGCATGGCTACCCGCGTCGGTGTGACAAAAGAGTTCTTTG 1019 consensus_7153#1 AAGGTAAGGTTTTGAACGTCAACATGTTTACACA-ACCACTGTGTTTAGTCCATGATCTG 536 ** * ** ** * * * **** *** * * **** * * * ** consensus_7153#0 GAATGTGAGAAAATGTGTACGCTGAAAATGTATGTTGGGAAATACGGGAATAGAAATGTT 1079 consensus_7153#1 GAACACAATTGACGGTGT----CGAAAAT---TGTC-------------ATGAGAGAATT 576 *** * * **** ****** *** ** * ** consensus_7153#0 AGTAGATAAACAAAAAAAAAACAAATAAACAAACAAAAAGATTGTTGAGCGACATGAGTA 1139 consensus_7153#1 GGTG---AAATAATGGAAAAGAACATTATCATCTGGAAAG--TATAAGGTTATAATTATT 631 ** *** ** **** * ** * ** **** * * * * * * consensus_7153#0 AAGTAAATTAATTTACAAACAATTGATATAAAAGAATATTAACAAAATACATCTATAATT 1199 consensus_7153#1 GCTTTAAGTGCTTTGCAGTATATTACTAATACCAAATGCAAATGAGAGGGAGAAATAAAT 691 * ** * *** ** *** ** * *** ** * * * **** * consensus_7153#0 GAATCAACAATCCAACCAACCAAGTGGAACACAGAAAACCAACCACAACGTTGCCCTCCC 1259 consensus_7153#1 AAGTGAAAAATAA----------------------------------------------- 704 * * ** *** consensus_7153#0 TGTTTTTCTCATCGTCGACAGAAAACAGGGGAGTGGGTGGCGTTTGTACAAAGCTAGGGC 1319 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 GAAGGAAAACACATGAAACAACTAGTACTCGTAGCTAAGAACCAATGAAGTTAGACTGGG 1379 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 TGAAAAGGGTTAAAAATGCAAGTAAAAAGTAAATTTTAAAATTATTTTATATTAACTTAA 1439 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 GTAAACCATACTAACACATTCTCACCACACAACACATAAACATACAAACCAAACAAACTT 1499 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 TGCTGAAACAATGCTGTAAGTAAATGCTGAAAAAAGTCATACACTTCACACGGCCAGAGG 1559 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 CTACATCCTTACTTCATGTTTTTTTACACACACTTTTACACATACACACACTTATACACA 1619 consensus_7153#1 ------------------------------------------------------------ consensus_7153#0 ATTACACACACTAGA 1634 consensus_7153#1 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||