These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7159#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 833 fasta sequence [CAGATCGCCACGAGGAGGTAACATCGCGGAAACACAATTTCACTCCGAAACAGTGAAAAATCACCTCCTTCTCTTCACATCATCACCACGCAACGAGGCGCGAAGTGGTCCAAAACTCCCCCCGAACCCATTGACAGCGCAAGTAAAGCGGAAAGAAACGACAAACCATGGAAGGAGAGGCGCGTTTTGTGATGGATCGGCCGAACGATCTCGAGGAGCAGCTAGCGCCCGGCTACCAGAAGGCTTTTACCTTCAACCTGCCGACGGTAACGCGACCGATGCTGTGGGACTACATGCTCCGCCTGATGAAGGCCGTGTCCGGCAACGATAGTCTCCTGAAGGCACTACAATCGTGCGCGGAAAACAATCCCGAGTTCGGGGACGACTCCGTCGGCTGTGTGCAGCTGCGGCGCGAAGACACCTACTGCACGGTGAAGGGCCAGATCCACACGATCGGCCCGTGCGACGATGGGGAAAACATGGAAATCAAAATCTACCAGCTGACGGTCACGATCGACGAGGAAAACCACAAGGTGGAGTCGGTCGCGTGCAGCGACTGTGCCGAGCTCGGGTTTTGCCA-GCACAC-GGTCAGCTTGCTGCTGTGGCTGCACACGCAGGACCA-GCCCGGCACGCACCAGGACG-TGGAGTGC-TTCTTCC-GCACGCCGCTCGCC-ACCGA--GCTGGA-GCAGAT-CCGGCGAAGCCCGCCCGGTCCAACCAGAACCAAAACGAAAANAGTTCATCCGGGAAGATNCGNGCCACGGCTTGCAGACCGGAAGGACATTCGACTGGTCCGATAGCGGNGAACTCTTCGTCGGGGAAANAAGAAGTTTCTCAGC] [+] EMBL BX467659 [CAGATCGCCACGAGGAGGTAACATCGCGGAAACACAATTTCACTCCGAAACAGTGAAAAATCACCTCCTTCTCTTCACATCATCACCACGCAACGAGGCGCGAAGTGGTCCAAAACTCCCCCCGAACCCATTGACAGCGCAAGTAAAGCGGAAAGAAACGACAAACCATGGAAGGAGAGGCGCGTTTTGTGATGGATCGGCCGAACGATCTCGAGGAGCAGCTAGCGCCCGGCTACCAGAAGGCTTTTACCTTCAACCTGCCGACGGTAACGCGACCGATGCTGTGGGACTACATGCTCCGCCTGATGAAGGCCGTGTCCGGCAACGATAGTCTCCTGAAGGCACTACAATCGTGCGCGGAAAACAATCCCGAGTTCGGGGACGACTCCGTCGGCTGTGTGCAGCTGCGGCGCGAAGACACCTACTGCACGGTGAAGGGCCAGATCCACACGATCGGCCCGTGCGACGATGGGGAAAACATGGAAATCAAAATCTACCAGCTGACGGTCACGATCGACGAGGAAAACCACAAGGTGGAGTCGGTCGCGTGCAGCGACTGTGCCGAGCTCGGGTTTTGCCAGGCACACGGGTCAGCTTGCTGCTGTGGCTGCACACGCAGGACCANGCCCGGCACGCACAGGGACGTTGGAGTGCTTTCTTCCGGNACGCGGTTCGCCAACCGAAGGCTGGAGGCAGAT CCGGCGAAGCCCGCCCGGTCCAACCAGAACCAAAACGAAAANAGTTCATCCGGGAAGATNCGNGCCACGGCTTGCAGACCGGAAGGACATTCGACTGGTCCGATAGCGGNGAACTCTTCGTCGGGGAAANAAGAAGTTTCTCAGC] [+] EMBL BM632909 [ ccgAAATCACCTCCTTCTCTTCACATCATCACCACGCAACGAGGCGCGAAGTGGTCCAAAACTCCCCCCGAACCCATTGACAGCGCAAGTAAAGCGGAAAGAAACGACAAACCATGGAAGGAGAGGCGCGTTTTGTGATGGATCGGCCGAACGATCTCGAGGAGCAGCTAGCGCCCGGCTACCAGAAGGCTTTTACCTTCAACCTGCCGACGGTAACGCGACCGATGCTGTGGGACTACATGCTCCGCCTGATGAAGGCCGTGTCCGGCAACGATAGTCTCCTGAAGGCACTACAATCGTGCGCGGAAAACAATCCCGAGTTCGGGGACGACTCCGTCGGCTGTGTGCAGCTGCGGCGCGAAGACACCTACTGCACGGTGAAGGGCCAGATCCACACGATCGGCCCGTGCGACGATGGGGAAAACATGGAAATCAAAATCTACCAGCTGACGGTCACGATCGACGAGGAAAACCACAAGGTGGAGTCGGTCGCGTGCAGCGACTGTGCCGAGCTCGGGTTTTGCCA GCACAC GGTCAGCTTGCTGCTGTGGCTGCACACGCAGGACCA GCCCGGCACGCACCAGGACG TGGAGTGC TTCTTCC GCACGCCGCTCGCC ACCGA GCTGGA GCAGATCCCGGCGAAG CCGCCg ] [+] EMBL BX621840 [ AGGCGCGAAGTGGTCCAAAACTCCCCCCGAACCCATTGACAGCGCAAGTAAAGCGGAAAGAAACGACAAACCATGGAAGGAGAGGCGCGTTTTGTGATGGATCGGCCGAACGATCTCGAGGAGCAGCTAGCGCCCGGCTACCAGAAGGCTTTTACCTTCAACCTGCCGACGGTAACGCGACCGATGCTGTGGGACTACATGCTCCGCCTGATGAAGGCCGTGTCCGGCAACGATAGTCTCCTGAAGGCACTACAATCGTGCGCGGAAAACAATCCCGAGTTCGGGGACGACTCCGTCGGCTGTGTGCAGCTGCGGCGCGAAGACACCTACTGCACGGTGAAGGGCCAGATCCACACGATCGGCCCGTGCGACGATGGGGAAAACATGGAAATCAAAATCTACCAGCTGACGGTCACGATCGACGAGGAAAACCACAAGGTGGAGTCGGTCGCGTGCAGCGACTGTGCCGAGCTCGGGTTTTGCCA GCACAC GGTCAGCTTGCTGCTGTGGCTGCACACGCAGGACCA GCCCGGCACGCACCAGGACG TGGAGTGC TTCTTCC GCACGCCGCTCGCC ACCGA GCT ] [+] EMBL BX621846 [ CGAAGTGGTCCAAAACTCCCCCCGAACCCATTGACAGCGCAAGTAAAGCGGAAAGAAACGACAAACCATGGAAGGAGAGGCGCGTTTTGTGATGGATCGGCCGAACGATCTCGAGGAGCAGCTAGCGCCCGGCTACCAGAAGGCTTTTACCTTCAACCTGCCGACGGTAACGCGACCGATGCTGTGGGACTACATGCTCCGCCTGATGAAGGCCGTGTCCGGCAACGATAGTCTCCTGAAGGCACTACAATCGTGCGCGGAAAACAATCCCGAGTTCGGGGACGACTCCGTCGGCTGTGTGCAGCTGCGGCGCGAAGACACCTACTGCACGGTGAAGGGCCAGATCCACACGATCGGCCCGTGCGACGATGGGGAAAACATGGAAATCAAAATCTACCAGCTGACGGTCACGATCGACGAGGAAAACCACAAGGTGGAGTCGGTCGCGTGCAGCGACTGTGCCGAGCTCGGGTTTTGCCA GCACAC GGTCAGCTTGCTGCTGTGGCTGCACACGCAGGACCA GCCCGGCACGCACCAGGACG TGGAGTGC TTCTTCC GCACGCCGCTCGCC ACCGA GCTGGA GCAGAT CCcgg ] consensusID : consensus_7159#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [CCGGTGGGTGATAGGTAAACAATCGCGGAAACACAATTTCACTCCGAAACAGTGAAAAATCACCTCCTTCTCTTCACATCATCACCACGCAACGAGGCGCGAAGTGGTCCAAAACTCCCCCCGAACCCATTGACAGCGCAAGTAAAGCGGAAAGAAACGACAAACCATGGAAGGAGAGGCGCGTTTTGTGATGGATCGGCCGAACGATCTCGAGGAGCAGCTAGCGCCCGGCTACCAGAAGGCTTTTACCTTCAACCTGCCGACGGTAACGCGACCGATGCTGTGGGACTACATGCGCCTGATGAAGGCCGTGTCCGGCAACGATAGTCTCCTGAAGGCACTACAATCGTGCGCGGAAAACAATCCCGAGTTCGGGGACGACTCCGTCGGCTGTGTGCAGCTGCGGCGCGAAGACACCTACTGCACGGTGAAGGGCCAGATCCACACGATCGGCCCGTGCGACGATGGGGAAAACATGGAAATCAAAATCTACCAGCTGACGGTCACGATCGACGAGGAAAACCACAAGGTGGAGTCGGTCGCGTGCAGCGACTGTGCCGAGCTCGGGTTTTGCCAGCACACGGTCAGCTTGCTGCTGTGGCTGCACACGCAGGACCAGCCCGGCACGCACCAAGGACGTGGAGTGCTTCTTCCGCACGCCGCTCGCCA] [+] EMBL BM610309 [CCGGTGGGTGATAGGTAAACAATCGCGGAAACACAATTTCACTCCGAAACAGTGAAAAATCACCTCCTTCTCTTCACATCATCACCACGCAACGAGGCGCGAAGTGGTCCAAAACTCCCCCCGAACCCATTGACAGCGCAAGTAAAGCGGAAAGAAACGACAAACCATGGAAGGAGAGGCGCGTTTTGTGATGGATCGGCCGAACGATCTCGAGGAGCAGCTAGCGCCCGGCTACCAGAAGGCTTTTACCTTCAACCTGCCGACGGTAACGCGACCGATGCTGTGGGACTACATGCGCCTGATGAAGGCCGTGTCCGGCAACGATAGTCTCCTGAAGGCACTACAATCGTGCGCGGAAAACAATCCCGAGTTCGGGGACGACTCCGTCGGCTGTGTGCAGCTGCGGCGCGAAGACACCTACTGCACGGTGAAGGGCCAGATCCACACGATCGGCCCGTGCGACGATGGGGAAAACATGGAAATCAAAATCTACCAGCTGACGGTCACGATCGACGAGGAAAACCACAAGGTGGAGTCGGTCGCGTGCAGCGACTGTGCCGAGCTCGGGTTTTGCCAGCACACGGTCAGCTTGCTGCTGTGGCTGCACACGCAGGACCAGCCCGGCACGCACCAAGGACGTGGAGTGCTTCTTCCGCACGCCGCTCGCCA] consensusID : consensus_7159#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 504 fasta sequence [ATCGCCCGAGGTNANCCGATTGATGCAGTGACAGCAAAGCAAAGCAAAAAAAAAAATGTCATCCGTTTTTATTTTCCTACAAAAAATCACTTCTAACCCAAATCGATTCCCCTTTCCAGACAATCGTGCGCGGAAAACAATCCCGAGTTCGGGGACGACTCCGTCGGCTGTGTGCAGCTGCGGCGCGAAGACACCTACTGCACGGTGAAGGGCCAGATCCACACGATCGGCCCGTGCGACTGATGGGGAAAACATGGAAATCAAAATCTACCAGCTGACGGTCACGATCGACGAGGAAAACCACAAGGTGGAGTCGGTCGCGTGCAGCGACTGTGCCGAGCTCGGGTTATATGCCAGCACACGGTCAGCTTGCTGCTGTGGCTGCACACGCAGGACCAGACCGGCACGCACCAGGACGTGGAGTGCTTCTTCCGCACGCCGCTCGCCACCGAGCTGGAGCAGATCCCGGCGAAGCCGCCGGTCAACAAAACCAAAACGAAAAAC] [+] EMBL AL934492 [ATCGCCCGAGGTNANCCGATTGATGCAGTGACAGCAAAGCAAAGCAAAAAAAAAAATGTCATCCGTTTTTATTTTCCTACAAAAAATCACTTCTAACCCAAATCGATTCCCCTTTCCAGACAATCGTGCGCGGAAAACAATCCCGAGTTCGGGGACGACTCCGTCGGCTGTGTGCAGCTGCGGCGCGAAGACACCTACTGCACGGTGAAGGGCCAGATCCACACGATCGGCCCGTGCGACTGATGGGGAAAACATGGAAATCAAAATCTACCAGCTGACGGTCACGATCGACGAGGAAAACCACAAGGTGGAGTCGGTCGCGTGCAGCGACTGTGCCGAGCTCGGGTTATATGCCAGCACACGGTCAGCTTGCTGCTGTGGCTGCACACGCAGGACCAGACCGGCACGCACCAGGACGTGGAGTGCTTCTTCCGCACGCCGCTCGCCACCGAGCTGGAGCAGATCCCGGCGAAGCCGCCGGTCAACAAAACCAAAACGAAAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7159#0 -CAGATCGCCACGAGGAGGTAACATCGCGGAAACACAATTTCACTCCGAAACAGTGAAAA 59 consensus_7159#1 CCGGTGGGTGATAGGTAAACA--ATCGCGGAAACACAATTTCACTCCGAAACAGTGAAAA 58 consensus_7159#2 ------------------------------------------------------------ consensus_7159#0 ATCACCTCCTTCTCTTCACATCATCACCACGCAACGAGGCGCGAAGTGGTCCAAAACTCC 119 consensus_7159#1 ATCACCTCCTTCTCTTCACATCATCACCACGCAACGAGGCGCGAAGTGGTCCAAAACTCC 118 consensus_7159#2 ------------------------------------------------------------ consensus_7159#0 CCCCGAACCCATTGACAGCGCAAGTAAAGCGGAAAGAAACGACAAACCATGGAAGGAGAG 179 consensus_7159#1 CCCCGAACCCATTGACAGCGCAAGTAAAGCGGAAAGAAACGACAAACCATGGAAGGAGAG 178 consensus_7159#2 ------------------------------------------------------------ consensus_7159#0 GCGCGTTTTGTGATGGATCGGCCGAACGATCTCGAGGAGCAGCTAGCGCCCGGCTACCAG 239 consensus_7159#1 GCGCGTTTTGTGATGGATCGGCCGAACGATCTCGAGGAGCAGCTAGCGCCCGGCTACCAG 238 consensus_7159#2 ------------------------------------------ATCGCCCGAGGTNANCCG 18 * ** * ** * * * consensus_7159#0 AAGGCTTTTACCTTCAACCTGCCGACGGTAACGCGACCGATGCTGTGGGACTACATGCTC 299 consensus_7159#1 AAGGCTTTTACCTTCAACCTGCCGACGGTAACGCGACCGATGCTGTGGGACTACATG--- 295 consensus_7159#2 ATTGATGC-AGTGACAGCAAAGCAA-AGCAAAAAAAAAAATGTCATCCGTTTTTATT--- 73 * * * * ** * * * * ** * *** * * * ** consensus_7159#0 CGCCTGATGAAGGCCGTGTCCGGCAACGATAGTCTCCTGAAGGCACTACAATCGTGCGCG 359 consensus_7159#1 CGCCTGATGAAGGCCGTGTCCGGCAACGATAGTCTCCTGAAGGCACTACAATCGTGCGCG 355 consensus_7159#2 TTCCTACAAAAAATCACTTCTAACCCAAATCGATTCCCCTTTCCAG-ACAATCGTGCGCG 132 *** ** * ** * ** * *** ** ************* consensus_7159#0 GAAAACAATCCCGAGTTCGGGGACGACTCCGTCGGCTGTGTGCAGCTGCGGCGCGAAGAC 419 consensus_7159#1 GAAAACAATCCCGAGTTCGGGGACGACTCCGTCGGCTGTGTGCAGCTGCGGCGCGAAGAC 415 consensus_7159#2 GAAAACAATCCCGAGTTCGGGGACGACTCCGTCGGCTGTGTGCAGCTGCGGCGCGAAGAC 192 ************************************************************ consensus_7159#0 ACCTACTGCACGGTGAAGGGCCAGATCCACACGATCGGCCCGTGCGAC-GATGGGGAAAA 478 consensus_7159#1 ACCTACTGCACGGTGAAGGGCCAGATCCACACGATCGGCCCGTGCGAC-GATGGGGAAAA 474 consensus_7159#2 ACCTACTGCACGGTGAAGGGCCAGATCCACACGATCGGCCCGTGCGACTGATGGGGAAAA 252 ************************************************ *********** consensus_7159#0 CATGGAAATCAAAATCTACCAGCTGACGGTCACGATCGACGAGGAAAACCACAAGGTGGA 538 consensus_7159#1 CATGGAAATCAAAATCTACCAGCTGACGGTCACGATCGACGAGGAAAACCACAAGGTGGA 534 consensus_7159#2 CATGGAAATCAAAATCTACCAGCTGACGGTCACGATCGACGAGGAAAACCACAAGGTGGA 312 ************************************************************ consensus_7159#0 GTCGGTCGCGTGCAGCGACTGTGCCGAGCTCGGGTTTT--GCCAGCACACGGTCAGCTTG 596 consensus_7159#1 GTCGGTCGCGTGCAGCGACTGTGCCGAGCTCGGGTTTT--GCCAGCACACGGTCAGCTTG 592 consensus_7159#2 GTCGGTCGCGTGCAGCGACTGTGCCGAGCTCGGGTTATATGCCAGCACACGGTCAGCTTG 372 ************************************ * ******************** consensus_7159#0 CTGCTGTGGCTGCACACGCAGGACCAGCCCGGCACGCACCA-GGACGTGGAGTGCTTCTT 655 consensus_7159#1 CTGCTGTGGCTGCACACGCAGGACCAGCCCGGCACGCACCAAGGACGTGGAGTGCTTCTT 652 consensus_7159#2 CTGCTGTGGCTGCACACGCAGGACCAGACCGGCACGCACCA-GGACGTGGAGTGCTTCTT 431 *************************** ************* ****************** consensus_7159#0 CCGCACGCCGCTCGCCACCGAGCTGGAGCAGATCCGGCGAAGCCCGCCCGGTCCAACCAG 715 consensus_7159#1 CCGCACGCCGCTCGCCA------------------------------------------- 669 consensus_7159#2 CCGCACGCCGCTCGCCACCGAGCTGGAGCAGATCCCGGCGAAGCCGCCGGTCAACAAAAC 491 ***************** consensus_7159#0 AACCAAAACGAAAANAGTTCATCCGGGAAGATNCGNGCCACGGCTTGCAGACCGGAAGGA 775 consensus_7159#1 ------------------------------------------------------------ consensus_7159#2 CAAAACGAAAAAC----------------------------------------------- 504 consensus_7159#0 CATTCGACTGGTCCGATAGCGGNGAACTCTTCGTCGGGGAAANAAGAAGTTTCTCAGC 833 consensus_7159#1 ---------------------------------------------------------- consensus_7159#2 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||