These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 858 fasta sequence [CCGATCGAGCAAAAACTCGCTCGCCACCCCCCTAGGGAAGCGTGCAATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAAAGCAAAGCTCA--AAAAAAACATACAAACGATTTCGTACCGAGTATCTGTCCAAGTGTCCAGCACAATGGGTGTACGGCAGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCCTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTGCCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAACGGGCACACCGCCCAGTACACGTTCCGCTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGGGCCGATAACGGGCGCGGCTCCGAGCACACGTTCGACGGGGTGGCGTGGGCGGCCGAGGCACACTTTGTGTTCTACAAGCAGGAGTACGGTTCGTTCGAGCAGGCTGTCACCCATCCGGACGGGCTGGCCGTGGTCGGTGCGCTGTACGAGGTCGGCGGCGATAAGGTGAAGCCGGGTGCGAAGTGGGCCGTACCGCTGCCAAAAATACGCCCCGCCGGCTCGACCACTACGCTGGANGGCGGGGCAGTGTTTAATCTGGATTCGGTGGCACCGGGCGGCTNCTGGCTGCGGTACTACTTCGTACGCCGGCAGCCTGAC] [+] EMBL BM616801 [CCGATCGAGCAAAAACTCGCTCGCCACCCCCCTAGGGAAGCGTGCAATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAAAGCAAAGCTCA AAAAAAACATACAAACGATTTCGTACCGAGTATCTGTCCAAGTGTCCAGCACAATGGGTGTACGGCAGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCCTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTGCCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAACGGGCACACCGCCCAGTACACGTTCCGCTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGGGCCGATAACGGGCGCGGCTCCGAGCAgc ] [+] EMBL BX622349 [ GGGAAGCGTGCAATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAAAGCAAAGCTCA AAAAAAACATACAAACGATTTCGTACCGAGTATCTGTCCAAGTGTCCAGCACAATGGGTGTACGGCAGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCCTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTGCCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAACGGGCACACCGCCCAGTACACGTTCCGCTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGGGCCGATAACGGGCGCGGCTCCGAGCACACGTTCGACGGGGTGGCGTGGGCGGCCGAGGCACACTTTGTGTTCTACAAGCAGGAGTACGGTTCGTTCGAGCAGGCTGTCACCCATCCGGACGGGCTGGCCGTGGTCGGTGCGCTGTACGAGGTCGGCGGCGATAAGGTGAAGCCGGGTGCGAAGTGGGCCGTACCGCTGCCAAAAATACGCCCCGCCGGCTCGACCACTACGCTGGANGGCGGGGCAGTGTTTAATCTGGATTCGGTGGCACCGGGCGGCTNCTGGCTGCGGTACTACTTCGTACGCCGGCAGCCT ] [+] EMBL BX628594 [ TTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAAAGCAAAGCTCA AAAAAAACATACAAACGATTTCGTACCGAGTATCTGTCCAAGTGTCCAGCACAATGGGTGTACGGCAGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCCTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTGCCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAACGGGCACACCGCCCAGTACACGTTCCGCTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGGGCCGATAACGGGCGCGGCTCCGAGCACACGTTCGACGGGGTGGCGTGGGCGGCCGAGGCACACTTTGTGTTCTACAAGCAGGAGTACGGTTCGTTCG ] [+] EMBL BX622249 [ CGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAACATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCCGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAATGGGCACACCGCCCAGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGAGCCGATAACGGGCGCGGCTCCGAGCACACGTTCGACGGGGTGGCGTGGGCGGCCGAGGCACACTTTGTGTTCTACAAGCAGGAGTACGGTTCGTTCGACCAGGCCGTCACCCAGCCGGACGGGCTGGCCGTGGTCGGTGCGCTGTACGANGTCGGCGGCGATAAGGTGAAGCCGGGTGCGAAGTGGGCCGTGCCGCTGCCAAAAATACGCCCCGCCGGCTCGACCACTACGCTGGANGGCGGGGCAGTGTTTAATCTGGATTCGGTGGCACCGGGCGGCTNCTGGCTGCGGTACTAC TCGTACGCCGGCAGCCTGAC] consensusID : consensus_7161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence [AGAATCTGCCAGGAATCNAGCATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAACATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCCGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAATGGGCACACCGCCAGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCATCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCATGCACTTCCACTTGGGGAGCCGATAACGGGCGCGGATCCGAGCAACAGTCAGACGGGGTGGCGTGGGCGGCGAGGCACACNAGGTCTACAAGCAAGAGTACCG] [+] EMBL AL934570 [AGAATCTGCCAGGAATCNAGCATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAACATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCCGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAATGGGCACACCGCCAGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCATCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCATGCACTTCCACTTGGGGAGCCGATAACGGGCGCGGATCCGAGCAACAGTCAGACGGGGTGGCGTGGGCGGCGAGGCACACNAGGTCTACAAGCAAGAGTACCG] consensusID : consensus_7161#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 541 fasta sequence [CCGCCCACGCGTCCGGTCGAGTGAATCGAGCAATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAACATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCCGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAATGGGCACACCGCCCAGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGAGCCGATAACGGGC] [+] EMBL BM616968 [CCGCCCACGCGTCCGGTCGAGTGAATCGAGCAATTTGGGTTAGAATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAACATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCCGCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCACGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGGTATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCATGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAACAATGGGCACACCGCCCAGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCTGATCGGTGGTCCGCTCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCTGCACTTCCACTGGGGAGCCGATAACGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7161#1 -----------------------AGAATCTGCCAG---GAATCNAGCA-TTTGGGTTAGA 33 consensus_7161#2 ----------------CCGCCCACGCGTCCGGTCGAGTGAATCGAGCAATTTGGGTTAGA 44 consensus_7161#0 CCGATCGAGCAAAAACTCGCTCGCCACCCCCCTAGG--GAAGCGTGCAATTTGGGTTAGA 58 * * *** * *** *********** consensus_7161#1 ATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAA 93 consensus_7161#2 ATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAGAGCGAAGTAAAGCAAAAAAA 104 consensus_7161#0 ATAATAAACGCTTCAAACGTTTCACACCGCATCAAAGCAAAGCAAAGCTCA--AAAAAAA 116 *************************************** *** *** * ******* consensus_7161#1 CATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCC 153 consensus_7161#2 CATACAAACGATTCCGTACCGAGTATCTGTCCCAGTGTCCAGCACAATGGGTGTACGGCC 164 consensus_7161#0 CATACAAACGATTTCGTACCGAGTATCTGTCCAAGTGTCCAGCACAATGGGTGTACGGCA 176 ************* ****************** ************************** consensus_7161#1 GCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCA 213 consensus_7161#2 GCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCA 224 consensus_7161#0 GCGGCAGTGTTTGGTCTACGGCGGACTGTTGCTAATCGCCGTCGTCGCTACCCTCGTGCA 236 ************************************************************ consensus_7161#1 CGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGG 273 consensus_7161#2 CGGTGACTTTTCTTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGG 284 consensus_7161#0 CGGTGACTTTTCCTATGAAGATCCGGACCGCTGGGCCGACACCGATCCGGACTGTGGCGG 296 ************ *********************************************** consensus_7161#1 TATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCA 333 consensus_7161#2 TATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTACCATCGCTCGACCA 344 consensus_7161#0 TATGCGCCAGAGCCCGATCGACATCGTGCGGTCGGCGGCCACGCTGCCATCGCTCGACCA 356 ********************************************* ************** consensus_7161#1 TGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAA 393 consensus_7161#2 TGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAA 404 consensus_7161#0 TGCCGCACCGCTCCTGCTGGAGGGTGGTGCCCGCAAGCCCGTCTCGATCGTGGTCACCAA 416 ************************************************************ consensus_7161#1 CAATGGGCACACCGCC-AGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCT 452 consensus_7161#2 CAATGGGCACACCGCCCAGTACACGTTCCACTGGAGCAAGGAGAGCGAGCGGCCGACGCT 464 consensus_7161#0 CAACGGGCACACCGCCCAGTACACGTTCCGCTGGAGCAAGGAGAGCGAGCGGCCGACGCT 476 *** ************ ************ ****************************** consensus_7161#1 GATCGGTGGTCCGCATCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGCATGCACTTCCAC 512 consensus_7161#2 GATCGGTGGTCCGC-TCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGC-TGCACTTCCAC 522 consensus_7161#0 GATCGGTGGTCCGC-TCCCGTTCGGCGCCCCGTACGTGCTCGAGCAGC-TGCACTTCCAC 534 ************** ********************************* *********** consensus_7161#1 TTGGGGAGCCGATAACGGGCGCGGATCCGAGCAACAGTCAGACGGGGTGGCGTGGGCGGC 572 consensus_7161#2 T-GGGGAGCCGATAACGGGC---------------------------------------- 541 consensus_7161#0 T-GGGGGGCCGATAACGGGCGCGGCTCCGAGCACACGTTCGACGGGGTGGCGTGGGCGGC 593 * **** ************* consensus_7161#1 -GAGGCACACNAGGT---CTACAAGCAAGAGTACCG------------------------ 604 consensus_7161#2 ------------------------------------------------------------ consensus_7161#0 CGAGGCACACTTTGTGTTCTACAAGCAGGAGTACGGTTCGTTCGAGCAGGCTGTCACCCA 653 consensus_7161#1 ------------------------------------------------------------ consensus_7161#2 ------------------------------------------------------------ consensus_7161#0 TCCGGACGGGCTGGCCGTGGTCGGTGCGCTGTACGAGGTCGGCGGCGATAAGGTGAAGCC 713 consensus_7161#1 ------------------------------------------------------------ consensus_7161#2 ------------------------------------------------------------ consensus_7161#0 GGGTGCGAAGTGGGCCGTACCGCTGCCAAAAATACGCCCCGCCGGCTCGACCACTACGCT 773 consensus_7161#1 ------------------------------------------------------------ consensus_7161#2 ------------------------------------------------------------ consensus_7161#0 GGANGGCGGGGCAGTGTTTAATCTGGATTCGGTGGCACCGGGCGGCTNCTGGCTGCGGTA 833 consensus_7161#1 ------------------------- consensus_7161#2 ------------------------- consensus_7161#0 CTACTTCGTACGCCGGCAGCCTGAC 858 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||