cluster # 7162

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Anopheles gambiae
cluster # 7162 cluster # 7162 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7162#0 length = 1196 sequences # 4

consensus_7162#1 length = 623 sequences # 2

consensusID : consensus_7162#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1196
fasta sequence

                              [CCGCGTTCACCAAAATCGTTCGTTTTAGCGACTCGCCTGGTTTCGTCGAAGCCCGGGTCGAAGTGACAAGAAGCGTACCGTACCTGTAACCCGGACCACCCTTGCATGGACCGCAGCAGTGCACAGTGATTTTGGGAGTTTTTTTTGTATGCGAAAAAATTTAAAAAAGTACAGACGAATTGAATCGACCAAGAACAACACAAGTGTGAAAACAGAAAACGGCTCGTGTTCCGTGCCGAGAGCTTCGGAGAGTGAAACGAAAGCGAAAGTGTTGATACGTTCTGTGCGTTGCAGCTGAACGGCGGCGAACAGTAGTGTGCAGTGCAGTTTGGAGTTTCGTGACAAGATTCTCGGTCTAGTTGGAGCGCTGTGAGAATATTTCAAAATGAACCATCGAACGAGGGCCCTGGTGGGGCTGCTGTGCATAGCGGGGCTGGCGACGGGCCAGCTGAACCAAAGCTACCGTCCGGAGTTCTTCTCGCCCGGTCAAGGCTTCCAGTCGGTGTCGGCGCAGATCTCAAGCAGTAACTACGGCGGCACGACGGTGACGAAGACGCAGGAGCGTACCGACGGTGGCATCACGAGCAAGGTTATCACTACCGGCACGATTACGCGCCCGTACTTCAAGCAAACGACGCTCACGTCCGACGGCTACAACTACCCAGTGCCGGAAACGATTCCGTGCTACGAGCCGAGCAAGATCTGCGCCCCGAACCAGTACTGTAACGATGGATTCGTCGACGAGTCGCAGCTGAACCTGTTCAACACGAACAATCAGAACTGCAACTCGGCCACGGAACAGTGCTGTAAGATTCGGCCGACGCCAGCCACGCGCTGCCCGGACGACAGCTACGTCTGCGTATCGCCCAGCTTATGCAACAACGGCCTGCTGAACTTCGATGCACAGAATGCCATCTCCACGAGACAACCGACTGGCGAATGTTACGCACCGGAAGTATGCTGCAAGCAGCAGTCGCTGCTGTCCCAGTCGACCGTCCTGACCAACGAGGGTTACGTCGTTAAGGACGAGATCCCGAACCCGGCCAACGACACGCCGGTCGTGATCCGGCCGACGACCCAGCGCCCCTTCCAGCCGCCGCGCCCGCAGGGTCCGGAGGCGCCGCCGCCACTGCCGCCGGTAGGCTGCTCCGCTGCGATGAACTGTACCGAGGAGGAGTACTGCTCGTCGACCGGCG]

[+] EMBL BM630310             [CCGCGTTCACCAAAATCGTTCGTTTTAGCGACTCGCCTGGTTTCGTCGAAGCCCGGGTCGAAGTGACAAGAAGCGTACCGTACCTGTAACCCGGACCACCCTTGCATGGACCGCAGCAGTGCACAGTGATTTTGGGAGTTTTTTTTGTATGCGAAAAAATTTAAAAAAGTACAGACGAATTGAATCGACCAAGAACAACACAAGTGTGAAAACAGAAAACGGCTCGTGTTCCGTGCCGAGAGCTTCGGAGAGTGAAACGAAAGCGAAAGTGTTGATACGTTCTGTGCGTTGCAGCTGAACGGCGGCGAACAGTAGTGTGCAGTGCAGTTTGGAGTTTCGTGACAAGATTCTCGGTCTAGTTGGAGCGCTGTGAGAATATTTCAAAATGAACCATCGAACGAGGGCCCTGGTGGGGCTGCTGTGCATAGCGGGGCTGGCGACGGGCCAGCTGAACCAAAGCTACCGTCCGGAGTTCTTCTCGCCCGGTCAAGGCTTCCAGTCGGTGTCGGCGCAGATCTCAAGCAGTAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM590456             [CCGCGTTCACCAAAATCGTTCGTTTTAGCGACTCGCCTGGTTTCGTCGAAGCCCGGGTCGAAGTGACAAGAAGCGTACCGTACCTGTAACCCGGACCACCCTTGCATGGACCGCACCAGTGCACAGTGATTTTGGGAGTTTTTTTTGTATGCGAAAAAATTTAAAAAAGTACATACGAATTGAATCGACCAATAACAACACAAGTGTGAAAACAGAAAACGGCTCGTGTTCCGTGCCGAGAGCTTCGGAGAGTGAAACGAAAGCGAAAGTGTTGATACGTTCTGTGCGTTGCAGCTGAACGGCGGCGAACAGTAGTGTGCAGTGCAGTTTGGAGTTTCGTGACAAGATTCTCGGCCTAGTTGGAGCGCTGTGATAATATTTCAAAATGAACCATCGAACGAGGGCCCTGGTGGGGCTGCTGTGCATAACGGGGCTGGCGACGGGCCATCTGAACCAAAGCTACCGTCCGGAGTTCTTCTCGCCCGGTCAAGGCTTCCAGTCGGTGTCGGCGCAGATCTCAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BM627946             [                                                                           ccgCGTACCTGTAACCCGGACCACCCTTGCATGGACCGCAGCAGTGCACAGTGATTTTGGGAGTTTTTTTTGTATGCGAAAAAATTTAAAAAAGTACAGACGAATTGAATCGACCAAGAACAACACAAGTGTGAAAACAGAAAACGGCTCGTGTTCCGTGCCGAGAGCTTCGGAGAGTGAAACGAAAGCGAAAGTGTTGATACGTTCTGTGCGTTGCAGCTGAACGGCGGCGAACAGTAGTGTGCAGTGCAGTTTGGAGTTTCGTGACAAGATTCTCGGTCTAGTTGGAGCGCTGTGAGAATATTTCAAAATGAACCATCGAACGAGGGCCCTGGTGGGGCTGCTGTGCATAGCGGGGCTGGCGACGGGCCAGCTGAACCAAAGCTACCGTCCGGAGTTCTTCTCGCCCGGTCAAGGCTTCCAGTCGGTGTCGGCGCAGATCTCAAGCAATAACTACGGCGGCACGACGGTGACGAAGACGCAGGAGCGTACCGACGGTGGCATCACGAGCAAGGTTATCACTACCGGCACGATTACGCGCCCGTACTTCAAGCAAACGACGCTCACGTCCGACGGCTACAACTACCCAGTGCCGGAAACGATTCCGTGCTACGAGCCGAGCAAGATCTGCGCCCCGAACCAGTACTGTAACGATGGATTCGTCGACGAGTCGCAGCTGAACCTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL BM627291             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ccgCACTACCGGCACGATTACGCGCCCGTACTTCAAGCAAACGACGCTCACGTCCGACGGCTACAACTACCCAGTGCCGGAAACGATTCCGTGCTACGAGCCGAGCAAGATCTGCGCCCCGAACCAGTACTGTAACGATGGATTCGTCGACGAGTCGCAGCTGAACCTGTTCAACACGAACAATCAGAACTGCAACTCGGCCACGGAACAGTGCTGTAAGATTCGGCCGACGCCAGCCACGCGCTGCCCGGACGACAGCTACGTCTGCGTATCGCCCAGCTTATGCAACAACGGCCTGCTGAACTTCGATGCACAGAATGCCATCTCCACGAGACAACCGACTGGCGAATGTTACGCACCGGAAGTATGCTGCAAGCAGCAGTCGCTGCTGTCCCAGTCGACCGTCCTGACCAACGAGGGTTACGTCGTTAAGGACGAGATCCCGAACCCGGCCAACGACACGCCGGTCGTGATCCGGCCGACGACCCAGCGCCCCTTCCAGCCGCCGCGCCCGCAGGGTCCGGAGGCGCCGCCGCCACTGCCGCCGGTAGGCTGCTCCGCTGCGATGAACTGTACCGAGGAGGAGTACTGCTCGTCGACCGGCG]




>consensus_7162#0
CCGCGTTCACCAAAATCGTTCGTTTTAGCGACTCGCCTGGTTTCGTCGAAGCCCGGGTCG
AAGTGACAAGAAGCGTACCGTACCTGTAACCCGGACCACCCTTGCATGGACCGCAGCAGT
GCACAGTGATTTTGGGAGTTTTTTTTGTATGCGAAAAAATTTAAAAAAGTACAGACGAAT
TGAATCGACCAAGAACAACACAAGTGTGAAAACAGAAAACGGCTCGTGTTCCGTGCCGAG
AGCTTCGGAGAGTGAAACGAAAGCGAAAGTGTTGATACGTTCTGTGCGTTGCAGCTGAAC
GGCGGCGAACAGTAGTGTGCAGTGCAGTTTGGAGTTTCGTGACAAGATTCTCGGTCTAGT
TGGAGCGCTGTGAGAATATTTCAAAATGAACCATCGAACGAGGGCCCTGGTGGGGCTGCT
GTGCATAGCGGGGCTGGCGACGGGCCAGCTGAACCAAAGCTACCGTCCGGAGTTCTTCTC
GCCCGGTCAAGGCTTCCAGTCGGTGTCGGCGCAGATCTCAAGCAGTAACTACGGCGGCAC
GACGGTGACGAAGACGCAGGAGCGTACCGACGGTGGCATCACGAGCAAGGTTATCACTAC
CGGCACGATTACGCGCCCGTACTTCAAGCAAACGACGCTCACGTCCGACGGCTACAACTA
CCCAGTGCCGGAAACGATTCCGTGCTACGAGCCGAGCAAGATCTGCGCCCCGAACCAGTA
CTGTAACGATGGATTCGTCGACGAGTCGCAGCTGAACCTGTTCAACACGAACAATCAGAA
CTGCAACTCGGCCACGGAACAGTGCTGTAAGATTCGGCCGACGCCAGCCACGCGCTGCCC
GGACGACAGCTACGTCTGCGTATCGCCCAGCTTATGCAACAACGGCCTGCTGAACTTCGA
TGCACAGAATGCCATCTCCACGAGACAACCGACTGGCGAATGTTACGCACCGGAAGTATG
CTGCAAGCAGCAGTCGCTGCTGTCCCAGTCGACCGTCCTGACCAACGAGGGTTACGTCGT
TAAGGACGAGATCCCGAACCCGGCCAACGACACGCCGGTCGTGATCCGGCCGACGACCCA
GCGCCCCTTCCAGCCGCCGCGCCCGCAGGGTCCGGAGGCGCCGCCGCCACTGCCGCCGGT
AGGCTGCTCCGCTGCGATGAACTGTACCGAGGAGGAGTACTGCTCGTCGACCGGCG

consensusID : consensus_7162#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 623
fasta sequence

                              [CCGCCCACGCGTCCGCCAAAATCGTTCGTTTTAGCGACTCGCCTGGTTTCGTCGAAGCCCGGGTCGAAGTGACAAGAAGCGTACCGTACCTGTAACCCGGACCACCCTTGCATGGACCGCAGCAGTGCACAGTGATTTTGGGAGTTTTTTTTGTATGCGAAAAAATTTAAAAAAGTACAGACGAATTGAATCGACCAAGAACAACACAAGTGTGAAAACAGAAAACGGCTCGTGTTCCGTGCCGAGAGCTTCGGAGAGTGAAACGAAAGCGAAAGTGTTGATACGTTCTGTGCGTTGCAGCTGAACGGCGGCGAACAGTAGTGTGCAGTGCAGTTTGGAGTTTCGTGACAAGATTCTCGGTCTAGTTGGAGCGCTGTGAGAATATTTCAAAATGAACCATCGAACGAGGGCCCTGGTGGGGCTGCTGTGCATAGCGGGGCTGGCGACGGGCCAGCTGAACCAAAGCTACCGTCCGGAGTTCTTCTCGCCCGGTCAAGGCTTCCAGTCGGTGTCGGCGCAGATCTCAAGCAGTAATGTTCAGCAGTTTAAGCGACAGGCTCCAGGCGGTGGCGGTCCGGGGGGTGCCGATGTCATCCCGCATGACCAGAAGAAGCAAACCACCT]

[+] EMBL BM635471             [CCGCCCACGCGTCCGCCAAAATCGTTCGTTTTAGCGACTCGCCTGGTTTCGTCGAAGCCCGGGTCGAAGTGACAAGAAGCGTACCGTACCTGTAACCCGGACCACCCTTGCATGGACCGCAGCAGTGCACAGTGATTTTGGGAGTTTTTTTTGTATGCGAAAAAATTTAAAAAAGTACAGACGAATTGAATCGACCAAGAACAACACAAGTGTGAAAACAGAAAACGGCTCGTGTTCCGTGCCGAGAGCTTCGGAGAGTGAAACGAAAGCGAAAGTGTTGATACGTTCTGTGCGTTGCAGCTGAACGGCGGCGAACAGTAGTGTGCAGTGCAGTTTGGAGTTTCGTGACAAGATTCTCGGTCTAGTTGGAGCGCTGTGAGAATATTTCAAAATGAACCATCGAACGAGGGCCCTGGTGGGGCTGCTGTGCATAGCGGGGCTGGCGACGGGCCAGCTGAACCAAAGCTACCGTCCGGAGTTCTTCTCGCCCGGTCAAGGCTTCCAGTCGGTGTCGGCGCAGATCTCAAGCAGTAATGTTCAGCAGTTTAAGCGACAGGCTCCAGGCGGTGGCGGTCCGGGGGGTGCCGATGTCATCCCGCATGACCAGAAGAAGCAAACCACCT]
[+] EMBL BM645733             [                                                                                                                                                                                                                ccgGTGAAAACAGAAAACGGCTCGTGTTCCGTGCCGAGAGCTTCGGAGAGTGAAACGAAAGCGAAAGTGTTGATACGTTCTGTGCGTTGCAGCTGAACGGCGGCGAACAGTAGTGTGCAGTGCAGTTTGGAGTTTCGTGACAAGATTCTCGGTCTAGTTGGAGCGCTGTGAGAATATTTCAAAATGAACCATCGAACGAGGGCCCTGGTGGGGCTGCTGTGCATAGCGGGGCTGGCGACGGGCCAGCTGAACCAAAGCTACCGTCCGGAGTTCTTCTCGCCCGGTCAAGGCTTCCAGTCGGTGTCGGCGCAGATCTCAAGCAGTAATGTTCAGCAGTTTAAGCGACAGGCTCCAGGCGGTGGCGGTCCGGGGGGTGCCGATGTCATCCCGCATGACCAGAAGAAGCAAAC     ]




>consensus_7162#1
CCGCCCACGCGTCCGCCAAAATCGTTCGTTTTAGCGACTCGCCTGGTTTCGTCGAAGCCC
GGGTCGAAGTGACAAGAAGCGTACCGTACCTGTAACCCGGACCACCCTTGCATGGACCGC
AGCAGTGCACAGTGATTTTGGGAGTTTTTTTTGTATGCGAAAAAATTTAAAAAAGTACAG
ACGAATTGAATCGACCAAGAACAACACAAGTGTGAAAACAGAAAACGGCTCGTGTTCCGT
GCCGAGAGCTTCGGAGAGTGAAACGAAAGCGAAAGTGTTGATACGTTCTGTGCGTTGCAG
CTGAACGGCGGCGAACAGTAGTGTGCAGTGCAGTTTGGAGTTTCGTGACAAGATTCTCGG
TCTAGTTGGAGCGCTGTGAGAATATTTCAAAATGAACCATCGAACGAGGGCCCTGGTGGG
GCTGCTGTGCATAGCGGGGCTGGCGACGGGCCAGCTGAACCAAAGCTACCGTCCGGAGTT
CTTCTCGCCCGGTCAAGGCTTCCAGTCGGTGTCGGCGCAGATCTCAAGCAGTAATGTTCA
GCAGTTTAAGCGACAGGCTCCAGGCGGTGGCGGTCCGGGGGGTGCCGATGTCATCCCGCA
TGACCAGAAGAAGCAAACCACCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7162#0      ------CCGCGTTCACCAAAATCGTTCGTTTTAGCGACTCGCCTGGTTTCGTCGAAGCCC 54
consensus_7162#1      CCGCCCACGCGTCCGCCAAAATCGTTCGTTTTAGCGACTCGCCTGGTTTCGTCGAAGCCC 60
                             ***** * *********************************************

consensus_7162#0      GGGTCGAAGTGACAAGAAGCGTACCGTACCTGTAACCCGGACCACCCTTGCATGGACCGC 114
consensus_7162#1      GGGTCGAAGTGACAAGAAGCGTACCGTACCTGTAACCCGGACCACCCTTGCATGGACCGC 120
                      ************************************************************

consensus_7162#0      AGCAGTGCACAGTGATTTTGGGAGTTTTTTTTGTATGCGAAAAAATTTAAAAAAGTACAG 174
consensus_7162#1      AGCAGTGCACAGTGATTTTGGGAGTTTTTTTTGTATGCGAAAAAATTTAAAAAAGTACAG 180
                      ************************************************************

consensus_7162#0      ACGAATTGAATCGACCAAGAACAACACAAGTGTGAAAACAGAAAACGGCTCGTGTTCCGT 234
consensus_7162#1      ACGAATTGAATCGACCAAGAACAACACAAGTGTGAAAACAGAAAACGGCTCGTGTTCCGT 240
                      ************************************************************

consensus_7162#0      GCCGAGAGCTTCGGAGAGTGAAACGAAAGCGAAAGTGTTGATACGTTCTGTGCGTTGCAG 294
consensus_7162#1      GCCGAGAGCTTCGGAGAGTGAAACGAAAGCGAAAGTGTTGATACGTTCTGTGCGTTGCAG 300
                      ************************************************************

consensus_7162#0      CTGAACGGCGGCGAACAGTAGTGTGCAGTGCAGTTTGGAGTTTCGTGACAAGATTCTCGG 354
consensus_7162#1      CTGAACGGCGGCGAACAGTAGTGTGCAGTGCAGTTTGGAGTTTCGTGACAAGATTCTCGG 360
                      ************************************************************

consensus_7162#0      TCTAGTTGGAGCGCTGTGAGAATATTTCAAAATGAACCATCGAACGAGGGCCCTGGTGGG 414
consensus_7162#1      TCTAGTTGGAGCGCTGTGAGAATATTTCAAAATGAACCATCGAACGAGGGCCCTGGTGGG 420
                      ************************************************************

consensus_7162#0      GCTGCTGTGCATAGCGGGGCTGGCGACGGGCCAGCTGAACCAAAGCTACCGTCCGGAGTT 474
consensus_7162#1      GCTGCTGTGCATAGCGGGGCTGGCGACGGGCCAGCTGAACCAAAGCTACCGTCCGGAGTT 480
                      ************************************************************

consensus_7162#0      CTTCTCGCCCGGTCAAGGCTTCCAGTCGGTGTCGGCGCAGATCTCAAGCAGTAACTACGG 534
consensus_7162#1      CTTCTCGCCCGGTCAAGGCTTCCAGTCGGTGTCGGCGCAGATCTCAAGCAGTAAT----- 535
                      ******************************************************      

consensus_7162#0      CGGCACGACGGTGACGAAGACGCAGGAGCGTACCGACGGTGGCATCACGAGCAAGGTTAT 594
consensus_7162#1      --GTTCAGCAGT--TTAAGCGACAGGCTCCAGGCGGTGGCGGTCCGGGGGGTGCCGATGT 591
                        *  *  * **    ***   ****  *    **  ** **      * *    * * *

consensus_7162#0      CACTACCGGCACGATTACGCGCCCGTACTTCAAGCAAACGACGCTCACGTCCGACGGCTA 654
consensus_7162#1      CAT--CCCGCATGACCAGAAG----------AAGCAAACCACCT---------------- 623
                      **   ** *** **  *   *          ******** **                  

consensus_7162#0      CAACTACCCAGTGCCGGAAACGATTCCGTGCTACGAGCCGAGCAAGATCTGCGCCCCGAA 714
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      CCAGTACTGTAACGATGGATTCGTCGACGAGTCGCAGCTGAACCTGTTCAACACGAACAA 774
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      TCAGAACTGCAACTCGGCCACGGAACAGTGCTGTAAGATTCGGCCGACGCCAGCCACGCG 834
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      CTGCCCGGACGACAGCTACGTCTGCGTATCGCCCAGCTTATGCAACAACGGCCTGCTGAA 894
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      CTTCGATGCACAGAATGCCATCTCCACGAGACAACCGACTGGCGAATGTTACGCACCGGA 954
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      AGTATGCTGCAAGCAGCAGTCGCTGCTGTCCCAGTCGACCGTCCTGACCAACGAGGGTTA 1014
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      CGTCGTTAAGGACGAGATCCCGAACCCGGCCAACGACACGCCGGTCGTGATCCGGCCGAC 1074
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      GACCCAGCGCCCCTTCCAGCCGCCGCGCCCGCAGGGTCCGGAGGCGCCGCCGCCACTGCC 1134
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      GCCGGTAGGCTGCTCCGCTGCGATGAACTGTACCGAGGAGGAGTACTGCTCGTCGACCGG 1194
consensus_7162#1      ------------------------------------------------------------
                                                                                  

consensus_7162#0      CG 1196
consensus_7162#1      --