These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1198 fasta sequence [CCGCCCACGCGTCCGGTTTTGTCTTGTTCCTTGGTGCAAGGTGGTGCCGGTATTATCCCAAATTGCGTAAAGCGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAGGATGACTATCAGCAATTTGATACGTTCACGCTGCTCGCTAGCTGCCGCTAAATCGTTTCTGGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAACAGTTGGAAAAGATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGCGCATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGCCGCGACGTACACGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGACACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCT-GGACGGTGCGGTGCTGGTGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGACCAATCCGTACCGGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTTCGTGCAGCTGCCGATTGGGGTGGAAAGTAACTGCAAGGGTGTGATCGACCTCGTCAAACAGCGTGCACTGTACTTCGAGGAACCGTATGGGCTGAAAATACGGGAGGATGAAATTCCGGCCGATATGCGCACGGAGAGCGCGGAACGAAGACAGGAACTGATCGAACATTTATCGAACGTGGACGAAAAGATTGGTGAACTGTTCCTGGAGGAGCGGGAGGCGACGGTGGACGACATTATGGGTGCGATTCGACGGTCGACGCTGAAGCGTGCCTTTACGCCAGTGCTCGTCGGTACGGCGCTCAAGAATAAGGGCGTTCAGCCGCTGCTGGATGCGGTGCTGGACTATCTGCCCCACCCGGGAGAGGTCGAGAATGTGGCGCTGGTCGAGAAGAAGGACGAAGAACCGCAGAAGGTGCCGCTGAATCCGGCTCGCGATGGAAAGGATCCGTTCGTTGGGTTAGCGTTCAAGCTGGAGGCTGGCCGGTTCGGT] [+] EMBL BM634075 [CCGCCCACGCGTCCGGTTTTGTCTTGTTCCTTGGTGCAAGGTGGTGCCGGTATTATCCCAAATTGCGTAAAGCGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAGGATGACTATCAGCAATTTGATACGTTCACGCTGCTCGCTAGCTGCCGCTAAATCGTTTCTGGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAACAGTTGGAAAAGATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGCGCATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGCCGCGACGTACACGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGACATGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCT GGACGGTGCGGTGCTGGTGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGC ] [+] EMBL BM588540 [ ccgGTTCCTTGGTGCAAGGTGGTGCCGGTATTATCCCAAATTGCGTAAAACGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAAGATGACTATCAGCAATTTGATACGTTCGCGCTGCTCGCTAGCTGCCGCTAAATCGTTTCTGGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAGCAGCTGGAAAAGATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTAACCGAGCGCATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGCCGCGACGTACACGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGGCACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGGACGGTGCGGTGCTGGTGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACA ] [+] EMBL BM597661 [ ccgGGTGCCGGTATTATCCCAAATTGCGTAAAGCGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAGGATGACTATCAGCAATTTGATACGTTCACGCTGCTCGCTAGCTGCCGCTAAATCGTTTCTGGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAACAGTTGGAAAAGATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGCGCATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGCCGCGACGTACACGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGACACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCT GGACGGTGCGGTGCTGGTGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGACCAATCCGTACCGGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTT ] [+] EMBL BM575099 [ ccgGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGGCCAATCCGTACCGGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTTCGTGCAGCTGCCGATTGGGGTGGAAAGTAACTGCAAGGGTGTGATCGACCTCGTCAAACAGCGTGCACTGTACTTCGAGGAACCGTATGGGCTGAAAATACGGGAGGATGAAATTCCGGCCGATATGCGCACGGAGAGCGCGGAACGAAGACAGGAACTGATCGAACATTTATCGAACGTGGACGAAAAGATTGGTGAACTGTTCCTGGAGGAGCGGGAGGCGACGGTGGACGACATTATGGGTGCGATTCGACGGTCGACGCTGAAGCGTGCCTTTACGCCAGTGCTCGTCGGTACGGCGCTCAAGAATAAGGGCGTTCAGCCGCTGCTGGATGCGGTGCTGGACTATCTGCCCCACCCGGGAGAGGTCGAGAATGTGGCGCTGGTCGAGAAGAAGGACGAAGAACCGCAGAAGGTGCCGCTGAATCCGGCTCGCGATGGAAAGGATCCGTTCGTTGGGTTAGCGTTCAAGCTGGAGGCTGGCCGGTTCGGT] consensusID : consensus_7174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 651 fasta sequence [CCGCCCACGCGTCCGGGACAATGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGCCGCGACGTACACGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGGCACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGACGGTGCGGTGCTGGTGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGGCCAATCCGTACCGGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTTCGTGCAGCTGCCGATTGGGGTGGAAAGTAACTGCAAGGGTGTGATCGACCTCGTGAAACAGCGTGCACTGTACTTCGAGGAACCGTATGGGCTGAAAATACGGGAGGATGAAATTCCGGCCGATATGCGCACGGAGAGCGCGGAACGAAGACAGGAACTGATCGAACATTTATCGAACGTGGACGAAAAGATTGGTGAACTGTTCCTGGAGGAGCGGGAGGCGACGGTGGAAGACATTATGGGTGCGATTCGACGGTCGACGCTGAAGCGTGCCTTTACGCC] [+] EMBL BM620614 [CCGCCCACGCGTCCGGGACAATGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGCCGCGACGTACACGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGGCACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGACGGTGCGGTGCTGGTGCTGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGGCCAATCCGTACCGGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTTCGTGCAGCTGCCGATTGGGGTGGAAAGTAACTGCAAGGGTGTGATCGACCTCGTGAAACAGCGTGCACTGTACTTCGAGGAACCGTATGGGCTGAAAATACGGGAGGATGAAATTCCGGCCGATATGCGCACGGAGAGCGCGGAACGAAGACAGGAACTGATCGAACATTTATCGAACGTGGACGAAAAGATTGGTGAACTGTTCCTGGAGGAGCGGGAGGCGACGGTGGAAGACATTATGGGTGCGATTCGACGGTCGACGCTGAAGCGTGCCTTTACGCC] consensusID : consensus_7174#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [CGACCCACGCGTCCGAGGTGGTGCCGGTATTATCCCAAATTGCGTAAAGCGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAGGATGACTATCAGCAATTTGATACGTTCGCGCTGCTCGCTAGCTGCCGCTAAATCGTTTCTGGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAGCAGCTGGAAAAGATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGCGCATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGTGGTATCACGATCCAGTCGGCCGCGACGTACACTGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGGCACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGGACGGTGCGGTGCTGGTGCTGTGCAGTGGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGGTGCTT] [+] EMBL BM576538 [CGACCCACGCGTCCGAGGTGGTGCCGGTATTATCCCAAATTGCGTAAAGCGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAGGATGACTATCAGCAATTTGATACGTTCGCGCTGCTCGCTAGCTGCCGCTAAATCGTTTCTGGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAGCAGCTGGAAAAGATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGCGCATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGTGGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGTGGTATCACGATCCAGTCGGCCGCGACGTACACTGATCTGGAAGGATCACAACATCAACATCATCGATACGCCCGGGCACGTCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGGACGGTGCGGTGCTGGTGCTGTGCAGTGGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCTACAATGTGCCGGTGCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7174#0 CCGCCCACGCGTCCGGTTTTGTCTTGTTCCTTGGTGCAAGGTGGTGCCGGTATTATCCCA 60 consensus_7174#1 ------------------------------------------------------------ consensus_7174#2 ------------------------------------------------------------ consensus_7174#0 AATTGCGTAAAGCGAGCGCAGTTTTCGATAAGTTTTCTTTGCCGATCGAATCCCAGACAG 120 consensus_7174#1 ------------------------------------------------------------ consensus_7174#2 ------------------------------------------------------------ consensus_7174#0 GATGACTATCAGCAATTTGATACGTTCACGCTGCTCGCTAGCTGCCGCTAAATCGTTTCT 180 consensus_7174#1 ------------------------------------------------------------ consensus_7174#2 ------------------------------------------------------------ consensus_7174#0 GGAGAACGTGAAATCATTCTCCAGCCATGCAACGTTTGCGGAGCACAAACAGTTGGAAAA 240 consensus_7174#1 ------------------------------------------------------------ consensus_7174#2 ------------------------------------------------------------ consensus_7174#0 GATTCGCAACATCGGCATCTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGCG 300 consensus_7174#1 ------------------------------------------------------------ consensus_7174#2 ------------------------------------------------------------ consensus_7174#0 CATCCTGTTCTACACCGGGCGCATCAAGGAGATGCACGAGGTGAAGGGCAAGGACAACGT 360 consensus_7174#1 ------------------------------------CCGCCCACGCGTCCGGGACAATGT 24 consensus_7174#2 ------------------------------------CGACCCACGCGTCCGAGGTGGTGC 24 * * * * * consensus_7174#0 GGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGC 420 consensus_7174#1 GGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGCGGCATCACGATCCAGTCGGC 84 consensus_7174#2 CGGTATTATCCCAAATTGCGTAAAGCGAGCGCAGT---------TTTCGATA-AGTTTTC 74 ** ** * * * *** * ** * * **** *** * consensus_7174#0 CGCGACGTACACGATCTGGA-AGGATCACAACATCAACATCATCGATACGCCCGGACACG 479 consensus_7174#1 CGCGACGTACACGATCTGGA-AGGATCACAACATCAACATCATCGATACGCCCGGGCACG 143 consensus_7174#2 TTTGCCGATCGAATCCCAGACAGGATGAC--TATCAGCAAT-TTGATACGTTCGCGCTGC 131 * ** * * ** ***** ** **** ** * ****** ** * consensus_7174#0 TCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGACGGTGCGGTGCTGGTGC 539 consensus_7174#1 TCGACTTTACGGTCGAGGTGGAGCGTGCCCTGCGCGTGCTGGACGGTGCGGTGCTGGTGC 203 consensus_7174#2 TCG--CTAGCTGCCG--CTAAATCGTTTCTGGAGAACGTGAAATCATTC-----TCCAGC 182 *** * * * ** * * *** * * * * * * * * ** consensus_7174#0 TGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCT 599 consensus_7174#1 TGTGCAGTGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACCGGCAGATGAAGCGCT 263 consensus_7174#2 CATGCAACGTTTGCGGAGCACA-AGC---------------AGCTGG-AAAAGATTCGCA 225 **** ** **** * ** *** * * ** * * ** *** consensus_7174#0 ACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGACCAATCCGTACC 659 consensus_7174#1 ACAATGTGCCGTGCTTGGCGTTCATCAACAAGCTCGACCGGTCCGGGGCCAATCCGTACC 323 consensus_7174#2 ACATCGG--CAT-CTCGGCACACATCGACAGCGGCAAGACGACGCTGACCGAGC-GCATC 281 *** * * * ** *** **** *** * * * * * ** * * * * * consensus_7174#0 GGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTTCGTGCAGCTGCCGA 719 consensus_7174#1 GGGTGCTGGGCCAGATGCGCTCCAAGCTGAACCACAACGCAGCGTTCGTGCAGCTGCCGA 383 consensus_7174#2 CTGTTCTACACCGG--GCGCATCAAGGAGATGCACGAGGTGAAG--GGCAAGGACAACGT 337 ** ** ** * **** **** ** *** * * * * * ** consensus_7174#0 TTGGGGTGGAAAGTAACTGCAAGGGTGTGATCGACCTCGTCAAACAGCG-TGCACTGTAC 778 consensus_7174#1 TTGGGGTGGAAAGTAACTGCAAGGGTGTGATCGACCTCGTGAAACAGCG-TGCACTGTAC 442 consensus_7174#2 GGGCGCTACGATGGACTCGATGGAGCTGGAGCGGCAGCGTGGTATCACGATCCAGTCGGC 397 * * * * * * * * * ** ** * *** * ** * ** * * consensus_7174#0 TTCGAGGAACCGTATGGGCTGAAAATACGGGAGGATGAAATTCCGGCCGATATGCGCACG 838 consensus_7174#1 TTCGAGGAACCGTATGGGCTGAAAATACGGGAGGATGAAATTCCGGCCGATATGCGCACG 502 consensus_7174#2 CGCGACGTACACT--GATCTGGAAGGATCACAACATCAACATC--ATCGATA--CGCCCG 451 *** * ** * * *** ** * * ** ** ** ***** *** ** consensus_7174#0 GAGAGCGCGGAACGAAGACAGGAACTGATCGAACATTTATCGAACGTGGACGAAAAGATT 898 consensus_7174#1 GAGAGCGCGGAACGAAGACAGGAACTGATCGAACATTTATCGAACGTGGACGAAAAGATT 562 consensus_7174#2 GGCACGTCGACTTTACGGTCGA----GGTGGAGCGTGCCCTGCGCGTGCTGGGACGGTGC 507 * * ** * * * * * ** * * * **** * * * consensus_7174#0 GGTGAACTGTTCCTGGAGGAGCGGGAGGCGACGGTGGACGACA--TTATGGGTGCGATTC 956 consensus_7174#1 GGTGAACTGTTCCTGGAGGAGCGGGAGGCGACGGTGGAAGACA--TTATGGGTGCGATTC 620 consensus_7174#2 GGTG--CTGGTGCTGT-GCAGTGGTCGGCGGTGTCCAGAGCCAAACGCTCACCGTGAACC 564 **** *** * *** * ** ** **** * * ** * * ** * consensus_7174#0 GACGGTCGA--CGCTGAAGCGTGCCTTTACGCCAGTGCTCGTCGGTACGGCGCTCAAGAA 1014 consensus_7174#1 GACGGTCGA--CGCTGAAGCGTGCCTTTACGCC--------------------------- 651 consensus_7174#2 GGCAGATGAAGCGCTACAATGTGCCGGTGCTT---------------------------- 596 * * * ** **** * ***** * * consensus_7174#0 TAAGGGCGTTCAGCCGCTGCTGGATGCGGTGCTGGACTATCTGCCCCACCCGGGAGAGGT 1074 consensus_7174#1 ------------------------------------------------------------ consensus_7174#2 ------------------------------------------------------------ consensus_7174#0 CGAGAATGTGGCGCTGGTCGAGAAGAAGGACGAAGAACCGCAGAAGGTGCCGCTGAATCC 1134 consensus_7174#1 ------------------------------------------------------------ consensus_7174#2 ------------------------------------------------------------ consensus_7174#0 GGCTCGCGATGGAAAGGATCCGTTCGTTGGGTTAGCGTTCAAGCTGGAGGCTGGCCGGTT 1194 consensus_7174#1 ------------------------------------------------------------ consensus_7174#2 ------------------------------------------------------------ consensus_7174#0 CGGT 1198 consensus_7174#1 ---- consensus_7174#2 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||