These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 954 fasta sequence [CCGGCGGCGCCCTTTTTTTTTTTTTTTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAACAAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATGGTAACAGTAGAATCAATAGTGAATAATGTTACAATCAAAATATATTACTGTGTGTTGTTCTCGAGTGGTTGCTGATTGTCCGTCGGCGTGGTCCGTTAAGCCGGTACCCAGCTCAGCGGGTTGGGCGTCAGGTCTTCCTTGTGCAACACTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCACCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAAACGCCACGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGTATCCGCAATATCGGAACGACTTGCCGAACAGTACCGTCCAGAAGAATGGGACCGCTTTGAGCGGTGTCGCCTTGCCGATCATGTTCAATGCCGCCACCCGGCCGTGATACTGTGCAAGCGGATAGTGGCCGATGGTAGCCTGCTGGCCATCGTTTGAGT-GGACCGGTGCGTTCGCAATGTCGCCCCCGACATACACACCTTCCAGATTCGACTCTAAATACTGGTCGGTGTTGATCGATCCGTTACGATTCAGGCTGATGCCCGAACCCTGCAGGAACTCCGTGTACAGCGTCGAACCGATGCCAAAAATGCAAATATCCGCATCGAGCAGGGTACCGTCGGTCAACTCGACCTGCTGCACCGTACCCTCCGCTCCGATGCACCGCCGGATGCCGGAATTCATCACGAACTGCACGCCCTTCTCCTCGAACAGCTCCATGACCCGCTGGCCGATCGCATCGCCAAACGATTCCTTTAGCGGAACGGCACCGCGACCGATGACCGTCACCTTGGCTACCTTGTTCACGCAGAGGG] [+] EMBL BM656830 [CCGGCGGCGCCCTTTTTTTTTTTTTTTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAACAAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATGGTAACAGTAGAATCAATAGTGAATAATGTTACAATCAAAATATATTACTGTGTGTTGTTCTCGAGTGGTTGCTGATTGTCCGTCGGCGTGGTCCGTTAAGCCGGTACCCAGCTCAGCGGGTTGGGCGTCAGGTCTTCCTTGTGCAACACTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCACCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAAACGCCACGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGTATCCGCAATATCGGAACGACTTGCCGAACAGTACCGTCCAGAAGAATGGGACCGCTTTGAGCGGTGTCGCCTTGCCGATCATGTTCAATGCCGCCACCCGGCCGTGATACTGTGCAAGCGGATAGTGGCCGATGGTAGCCTGCTGGCCATCGTTTGAGTGGGACCGGTGCGTTCGCAAT ] [+] EMBL CNS09HEL [ AATATATTACTGTGTGTTGTTCTCGAGTGGTTGCTGATTGTCCGTCGGCGTGGTCCGTTAAGCCGGTACCCAGCTCAGCGGGTTGGGCGTCAGGTCTTCCTTGTGCAACACTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCACCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAAACGCCACGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGTATCCGCAATATCGGAACGACTTGCCGAACAGTACCGTCCAGAAGAATGGGACCGCTTTGAGCGGTGTCGCCTTGCCGATCATGTTCAATGCCGCCACCCGGCCGTGATACTGTGCAAGCGGATAGTGGCCGATGGTAGCCTGCTGCCCATCGTTTGAGT GGACCGGTGCGTTCGCAATGTCGCCCCCGACATACACACCTTCCAGATTCGACTCTAAATACTGGTCGGTGTTGATCGATCCGTTACGATTCAGGCTGATGCCCGAACCCTGCAGGAACTCCGTGTACAGCGTCGAACCGATGCCAAAAATGCAAATATCCGCATCGAGCAGGGTACCGTCGGTCAACTCGACCTGCTGCACCGTACCCTCCGCTCCGATGCACCGCCGGATGCCGGAATTCATCACGAACTGCACGCCCTTCTCCTCGAACAGCTCCATGACCCGCTGGCCGATCGCATCGCCAAACGATTCCTTTAGCGGAACGGCACCGCGACCGATGACCGTCACCTTGGCTACCTTGTTCACGCAGAGGG] [-] EMBL BX615153 [ GTGGTCCGTTAAGCCGGTACCCAGCTCAGCGGGTTGGGCGTCAGGTCTTCCTTGTGCAACCCTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCACCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAAACGCCCCGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGTTTCCGCAATATCGGAACGACTTGCCGAACAGTCCCGTCCAGAAGAATGGGACCGCTTTGAGCGGTGTCGCCTTGCCGATCATGTTCAATGCCGCCCCCCGGCCGTGATACTGTGCCAGCGGATAGTGGCCGATGGTAGCCTGCTGGCCATCGTTTGAGT GGACCGGTGCGTTCGCAATATCGCCC ] [+] EMBL AGA285326 [ AGCCGGTACCCAGCTCAGCGGGTTGGGCGTCAGGTCTTCCTTGTGCAACACTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCACCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAAACGCCACGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGTATCCGCAATATCGGAACGACTTGCCGAACAGTACCGTCCAGAATAATGGGACCGCTTTGAGCGGTGTCGCCTTGCCGATCATGTTCAATGCC ] [-] EMBL AGA284031 [ CTGGTCGGTGTTGATCGATCCGTTACGATTCAGGCTGATGCCCGAGCCCTGCAGGAACTCCGTGTACAGCGTCGAACCGATGCCAAAAATGCAAATATCCGCATCGAGCAGTGTACCGTCGGTCAGCTCGACCTGCTGCACCGCACCCTCCGCTCCGATGCACCGCCGGATGCCGGAATTCATCACGAACTGCACGCCCTTCTCCTCGAACAGCTCCATGACCCGCTGGCCGATCGCATCGCCAAACGATTCCTTTAGCGGAACGGCACCGCGACCGATGACCGTCACCTTGGCTACCTTGTTC ] consensusID : consensus_7215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 511 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAACAAAATGAGGCTTTCGGTGGTGAATTTCTTCAAGAAAAGTGTAAATGGACACATTTTTCGCGGTAAATATCGATTGGTGAAACGGGTAACGCCTCGCTCGACCCAGACACTCATTCGAGAGTACGAACAAACGGAGGCTAACATGAAACTGCTGCTCCATCCGTACCTGTCCAAGGAACAATCCAGCGGACATGCGAAGGAGCTGGGTAAGAAGGAACAGCTGGTGGCCAAATGGCGCGCGGAACAGCTCAAGATGAAACCGCACGTCACGATAGCGGAACGATTGGCACATCTGCAGGTTAAAAATGTGTGGGATTAGCGTAACGGAAGC-TGAAACAGTATAACACCGCTGAAGGTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAACAAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATGGTAACAGTAGAATCAATAGTGAATAATGTTACAATC] [+] EMBL BM597015 [CCGCCCACGCGTCCGCCCACGCGTCCGAACAAAATGAGGCTTTCGGTGGTGAATTTCTTCAAGAAAAGTGTAAATGGACACATTTTTCGCGGTAAATATCGATTGGTGAAACGGGTAACGCCTCGCTCGACCCAGACACTCATTCGAGAGTACGAACAAACGGAGGCTAACATGAAACTGCTGCTCCATCCGTACCTGTCCAAGGAACAATCCAGCGGACATGCGAAGGAGCTGGGTAAGAAGGAACAGCTGGTGGCCAAATGGCGCGCGGAACAGCTCAAGATGAAACCGCACGTCACGATAGCGGAACGATTGGCACATCTGCAGGTTAAAAATGTGTGGGATTAGCGTAACGGAAGC TGAAACAGTATAACACCGCTGAAGGTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAACAAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATG ] [+] EMBL BM650937 [ ccgtTCCGCACGCACTTCGTAACAAAATGAGGCTTTCGGTGGTGAATTTCTTCAAGAAAAGTGTAAATGGACACATTTTTCGCGGTAAATATCGATTGGTGAAACGGGTAACGCCTCGCTCGACCCAGACACTCATTCGAGAGTACGAACAAACGGAAGCCAACATGAAACTGCTGCTCCATCCGTACCTGTCCAAGGAACAATCCAGCGGACATGCGAAGGAGCTGGGTAAGAAGGAACAGCTCGTGGCCAAATGGCGCGCGGAACAGCTCAAGATGAAACCGCACGTCACGATAGCGGAACGATTGGCACACTTGCAGGTCAAAAATGTGTGGGATTAGCGTAACGGAAGCGTGAAACAGTATAACACCGCTGAAGGTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAACAAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATGGTAACAGTAGAATCAATAGTGAATAATGTTACAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7215#0 CCGGCGGCGCCCTTTTTTTTTTTTTTTTCGGAGTAAAAGGAGTTCCTTTTATTGTACAAC 60 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 AAGCATTTTACATCAACAATGCGTTTGAGAGAGTGTTCACTCTTCTCGTGTATATGGTAA 120 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 CAGTAGAATCAATAGTGAATAATGTTACAATCAAAATATATTACTGTGTGTTGTTCTCGA 180 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 GTGGTTGCTGATTGTCCGTCGGCGTGGTCCGTTAAGCCGGTACCCAGCTCAGCGGGTTGG 240 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 GCGTCAGGTCTTCCTTGTGCAACACTTTACCCTGCGAGGAATACTCTGCAAACTGGGCCA 300 consensus_7215#1 ---------------------------------------------CCGCCCACGCGTCCG 15 * ** ** * ** consensus_7215#0 CCACCGGATCTCGCTGGCATGATGACATCCCTATCACCCGTCCCCCCTTACCGATGTAAA 360 consensus_7215#1 CCCACGCGTCCGAACAAAATGAGGCTTTCGGTGGTGAAT-TTCTTCAAGAAAAGTGTAAA 74 ** ** ** **** * ** * * * * * ****** consensus_7215#0 ACGCCACGAACTTTAGGGCGGCCAGATCTCCGTCAATGATCACCTCGTCGGGCTGGCCGT 420 consensus_7215#1 TGGACACATTTTTCGCGGT----AAATATCGATTGGTGA--AACGGGTAACGCCTCGCTC 128 * *** ** ** * ** ** * *** * * ** ** * consensus_7215#0 ATCCGCAATATCGGAACGACTTGCCGAACAGTACCGTCCAGAAGAATGGGACCGCTTTGA 480 consensus_7215#1 GACCCAGACACTCATTCGAGAGTACGAACA--AACGGAGGCTAACATGAAACTGC--TGC 184 ** * * *** ****** * ** * *** ** ** ** consensus_7215#0 GCGGTGTCGCCTTGCCGATCATGTTCAATGCCGCCACCCGGCCGTGATACTGTGCAAGCG 540 consensus_7215#1 TCCATCCGTACCTGTCCA--AGGAACAATCCAGCGGACATGCGAAGGAGCTGGGTAAGAA 242 * * * ** * * * * **** * ** * ** * *** * *** consensus_7215#0 GATAGTGGCCGATGG-----TAGCCTGCTGGCCATCGTTTGAGTGGACCGGTGCGTTCGC 595 consensus_7215#1 GG-AACAGCTGGTGGCCAAATGGCGCGCGGAACAGC-TCAAGATGAAACCGCACGT-CAC 299 * * ** * *** * ** ** * ** * * ** * * * *** * * consensus_7215#0 AATGTCGCCCCCGACATACACACCTTCCAGATTCGACTCTA-AATACTGGT-CGGTGTTG 653 consensus_7215#1 GATAGCGGAAC-GATTGGCACATCTGCAGGTTAAAAATGTGTGGGATTAGCGTAACGGAA 358 ** ** * ** **** ** * * * * * * * * * * consensus_7215#0 ATCGATCCGTTACGATTCAGGCTGATGCCCGAACCCTGCAGGAACTCCGTGTACAGCGTC 713 consensus_7215#1 GCTGAAACAGTATAACACCGCTGAAGGTTCGGAGTA-AAAGGAGTTCCTTTTAT--TGTA 415 ** * ** * * * * * ** * **** *** * ** ** consensus_7215#0 GAACCGATGCCAAAAATGCAAATATCCGCATCGAGCAGGGTACCGTCGGTCAACTCGACC 773 consensus_7215#1 CAACAAGCATTTTACAT-CAACAATGCGT-TTGAG-AGAGTGT--TCACTCTTCTCG--- 467 *** * ** *** ** ** * *** ** ** ** ** **** consensus_7215#0 TGCTGCACCGTACCCTCCGCTCCGATGCACCGCCGGATGCCGGAATTCATCACGAACTGC 833 consensus_7215#1 TG-TATATGGTAACAGTAGAATCAAT--AGTGAATAATGTTACAATC------------- 511 ** * * *** * * * ** * * *** *** consensus_7215#0 ACGCCCTTCTCCTCGAACAGCTCCATGACCCGCTGGCCGATCGCATCGCCAAACGATTCC 893 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 TTTAGCGGAACGGCACCGCGACCGATGACCGTCACCTTGGCTACCTTGTTCACGCAGAGG 953 consensus_7215#1 ------------------------------------------------------------ consensus_7215#0 G 954 consensus_7215#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||