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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7221#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1263 fasta sequence
[CCGCACGCCGTGAACCACCGGTACGCGCGGGCAGAACAGCCGGTCCAGTATCAGCAGCAGCAGCAGCAGAAGCAGCACCATTACTACGGTGCTCCCCGAGCCGGCTCCTCGACACGCTTCCTCGACCGAAGCCGCACACTGTACATAGTTGAGTAGGTGGGACGAATCCTAAGGGTCGTCGTGTGTATCAGCACACCGTAAGACTAATGGGACACATTACTAAGGCAATGTTAGGCTGTAAGGTAGGAGGGTAATTCCTTTGCGCGAGTATATGTGAATGACTTATGTGTGTGTGGATGCGAATGATTGCGAATGGTTGCACGAGTGATATGAGAGTTTCTTGTAGGGCTAAGCATATAATTCCACTCCCTCGACATGAGCGGCCTAGAGGTTCCTAACCAGCATGGGGGAGGGGGGGGGGGGGCGAGAGTTGCTTGTGTGTGTGTCAAACGAAACCGAACCGAGGTCGGAATCGGTGAATGAAAAGCCAACAAAAATCCGCGGGGAAAAAGAAGGGGAACTTTTGTTTTGTTTTTTAAGTTGTTTTAGTCACTGTAAGAAAACTGAAGCGACTCAGTTCGGTTTTTGGAGAGATCGAGCGTAAGCGTATGGAAATAAAAATGGCACCACCATCCACACGGTGCAGAACATTGATCGCATGCATTGAGGTTAGGCCGGTAAAGTCCACCCGTTATTCTGCACCGAGCTGTGCCACTAGTTGTGTTTTAGGGATAGAGTA-GACGAGTTA-GCAATACCCTTAGTAGCGCAATAGTTAAACCCCGATCTTCACCCAT-CAC-CCCCCCGTTCCCT-CCCTCTT-CCCGCGAGGTG-CCGGGTTGAAG-TTTCTTTGAGG-CCAAAGTTTTTA-CTACACCACACATGCA-CACACAC-AAACCTACACTCCCTGTCAGGATGATACTGCAG-ATGAAGTAGAGCGAGTGATCTGAATGGTTGTGTGTGTGTGTGTTTTTGTTGTGTTTGCGTTAAATTTTCTTGTTATGAACGAATCCAACCCGAAGCCTCGAAGCCTCGAAGTGCGTTTTCTTGCGGAAGAAGAACACGTGTTGTGCTAAGTAGGCGTTCGCTGTTGCGCTGCGTCTTCGTGCGTTCCACGCGACACAGTTGATCGCTCTAAAAGGCCAGTAAATTAATAGGAAGAGAGTGAGTGTGTAAGAGAGCAAAGGAGAGATAGATAATACAGAGCAATAATAAAATTAAATCCAAATAACAGTCTATCAGTGTCGATAGGAAAACAGCAAACAAAAACCC]
[+] EMBL BM613331 [CCGCACGCCGTGAACCACCGGTACGCGCGGGCAGAACAGCCGGTCCAGTATCAGCAGCAGCAGCAGCAGAAGCAGCACCATTACTACGGTGCTCCCCGAGCCGGCTCCTCGACACGCTTCCTCGACCGAAGCCGCACACTGTACATAGTTGAGTAGGTGGGACGAATCCTAAGGGTCGTCGTGTGTATCAGCACACCGTAAGACTAATGGGACACATTACTAAGGCAATGTTAGGCTGTAAGGTAGGAGGGTAATTCCTTTGCGCGAGTATATGTGAATGACTTATGTGTGTGTGGATGCGAATGATTGCGAATGGTTGCACGAGTGATATGAGAGTTTCTTGTAGGGCTAAGCATATAATTCCACTCCCTCGACATGAGCGGCCTAGAGG ]
[-] EMBL BX621851 [ TCCAGTATCAGCAGCAGCAGCAGCAGAAGCAGCACCATTACTACGGTGCTCCCCGAGCCGGCTCCTCGACACGCTTCNTCGACCGAAGCCGCACACTGTACATAGTTGAGTAGGTGGGACGAATCCTAAGGGTCGTCGTGTGTATCAGCACACCGTAAGACTAATGGGACACATTACTAAGGCAATGTTAGGCTGTAAGGTAGGAGGGTAATTCCTTTGCGCGAGTATATGTGAATGACTTATGTGTGTGTGGATGCGAATGATTGCGAATGGTTGCACGAGTGATATGAGAGTTTCTTGTAGGGCTAAGCATATAATTCCACTCCCTCGACATGAGCGGCCTAGAGGTTCCTAACCAGCATGGGGGAGGGGGGGGGGGGGCGAGAGTTGCTTGTGTGTGTGTCAAACGAAACCGAACCGAGGTCGGAATCGGTGAATGAAAAGCCAACAAAAATCCGCGGGGAAAAAGAAGGGGAACTTTTGTTTTGTTTTTTAAGTTGTTTTAGTCACTGTAAGAAAACTGAAGCGACTCAGTTCGGTTTTTGGAGAGATCGAGCGTAAGCGTATGGAAATAAAAATGGCACCACCATCCACACGGTGCAGAACATTGATCGCATGCATTGAGGTTAGGCCGGTAAAGTCCACCCGTTATTCTGCACCGAGCTGTGCCACTAGTTGTGTTTTAGGGATAGAGTA GACGAGTTA GCAATACCCT ]
[+] EMBL BX619626 [ ACCGAGGTCGGAATCGGTGAATGAAAAGCCAACAAAAATCCGCGGGGAAAAAGAAGGGGAACTTTTGTTTTGTTTTTTAAGTTGTTTTAGTCACTGTAAGAAAACTGAAGCGACTCAGTTCGGTTTTTGGAGAGATCGAGCGTAAGCGTATGGAAATAAAAATGGCACCACCATCCACACGGTGCAGAACATTGATCGCATGCATTGAGGTTAGGCCGGTAAAGTCCACCCGTTATTCTGCACCGAGCTGTGCCACTAGTTGTGTTTTAGGGATAGAGTANGACGAGTTACGCAATACCCTTAGTAGCGCAATAGTTAAACCCCGATCTTCACCCATCCACNCCCCCCGTTCCCTCCCCTCTTCCCCGCGAGGTGCCCGGGTNGAAGTTTTCNTTGAGGCCCAAAGTTTTTANCTACACCACACATGCACCACACACNNAACCTANACTCCCTGTCAGGATGATACTGCAGNATGAAGTAAAGCGAGTGATCTGAATGGTTGTGTGTGTGTGTGTTTTTGTTGTGTTTGCGTTnna ]
[+] EMBL BX624919 [ GTGAATGAAAAGCCAACAAAAATCCGCGGGGAAAAAGAAGGGGAACTTTTGTTTTGTTTTTTAAGTTGTTTTAGTCACTGTAAGAAAACTGAAGCGACTCAGTTCGGTTTTTGGAGAGATCGAGCGTAAGCGTATGGAAATAAAAATGGCACCACCATCCACACGGTGCAGAACATTGATCGCATGCATTGAGGTTAGGCCGGTAAAGTCCACCCGTTATTCTGCACCGAGCTGTGCCACTAGTTGTGTTTTAGGGATAGAGTA GACGAGTTA GCAATACCCTTAGTAGCGCAATAGTTAAACCCCGATCTTCACCCAT CAC CCCCCCGTTCCCT CCCTCTT CCCGCGAGGTG CCGGGTTGAAG TTTCTTTGAGG CCAAAGTTTTTA CTACACCACACATGCA CACACAC AAACCTACACTCCCTGTCAGGATGATACTGCAG ATGAAGTAGAGCGAGTGATCTGAATGGTTGTGTGTGTGTGTGTTTTTGTTGTGTTTGCGTTAAATTTTCTTGTTATGAACGAATCCAACCCGAAGCCTCGAAGCCTCGAAGTGCGTTTTCTTGCGGAAGAAGAACACGTGTTGTGCTAAGTAGGCGTTCGCTGTTGCGCTGCGTCTTCGTGCGTTCCACGCGACACAGTTGATCGCTCTAAAAGGCCAGTAAATTAATAGGAAGAG ]
[+] EMBL BX623714 [ GAATGAAAAGCCAACAAAAATCCGCGGGGAAAAAGAAGGGGAACTTTTGTTTTGTTTTTTAAGTTGTTTTAGTCACTGTAAGAAAACTGAAGCGACTCAGTTCGGTTTTTGGAGAGATCGAGCGTAAGCGTATGGAAATAAAAATGGCACCACCATCCACACGGTGCAGAACATTGATCGCATGCATTGAGGTTAGGCCGGTAAAGTCCACCCGTTATTCTGCACCGAGCTGTGCCACTAGTTGTGTTTTAGGGATAGAGTA GACGAGTTA GCAATACCCTTAGTAGCGCAATAGTTAAACCCCGATCTTCACCCAT CAC CCCCCCGTTCCCT CCCTCTT CCCGCGAGGTG CCGGGTTGAAG TTTCTTTGAGG CCAAAGTTTTTA CTACACCACACATGCA CACACAC AAACCTACACTCCCTGTCAGGATGATACTGCAG ATGAAGTAGAGCGAGTGATCTGAATGGTTGTGTGTGTGTGTGTTTTTGTTGTGTTTGCGTTAAATTTTCTTGTTATGAACGAATCCAACCCGAAGCCTCGAAGCCTCGAAGTGCGTTTTCTTGCGGAAGAAGAACACGTGTTGTGCTAAGTAGGCGTTCGCTGTTGCGCTGCGTCTTCGTGCGTTCCACGCGACACAGTTGATCGCTCTAAAAGGCCAGTAAATTAATAGGAAGAGAGTGAGTGTGTAAGAGAGCAAAGGAGAGATAGATAATACAG ]
[+] EMBL BX607963 [ cTGAAGTAGAGCGAGTGATCTGAATGGTTGTGTATGCGTGTGTTTTTGTTGTGTTTGCGTTAAATTTTCTTGTTATGAACGAATCCAACC CGAAGCCTCGAAGTGCGTTTTCTTGCGGAAGAAGAGCACGTGTTGTGCTAAGTAGGCGTTCGCTGTTGCGCTGCGTCTTCGTGCGTTCCACGCGACACAGTTGATCGCTCTAAAAGGCCAGTAAATTAATAGGAAGAGAGTGAGTGTGTAAGAGAGCAAAAGAGAGATAGATAATACAGAGCAATAATAAAATTAAATCCAAATAACAGTCTATCAGTGTCGATAGGAAAACAGCAAACAAAAACCC]
consensusID : consensus_7221#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 972 fasta sequence
[AGATCGGCCCNGGTGTTAACGAAACGAACCGAGGTCGCCNAATCGGTGAATGAATNAGCCAACAAAAATCCGCGGGGAAAAAGAAGGGGAACTTTTGTTTTGTTTTTTAAGTTGTTTTAGTCACTGTAAGAAAACTGAAGCGACTCAGTTCGGTTTTTGGAGAGATCGAGCGTAAGCGTATGTGACAATAAAAATGGCACCACCATCCACACGGTGCAGAACATTGATCGCATGCATTGAGGTTAGGCCGGTAAAGTCCACCCGTTATTCTGCNACCGANCTGTGCCACTAGTTGTGTNAGGGATAGAGTAGACGAGTTAGCAATACCCTTAGTAGCGCAATAGTTAAANCCCGATNCTTCACCATACAACCCCCCGTATCCCTCCCCTCTTCCCGGAGGTCCCGGGTATGAAGGTNTTCTTTGAGTGCCCACAAGTCTGCTACTACACNCAACAACATNGCACACACCAACCACAACCCTTCACAACTCCCCTGTTACCAGGATGAATNACTGGCCCATTGAAGGCTAGAAGCAGNANCTTGATCCTGAAATGGGTNAGGNAGATAGCAGATAGTNGTNGTACAACGTCCTCGTAGTCCGGCGTANCAAANACANCNTTNGNNCAAATNGCAAACGAAAATTCCCCAAAACGCACGACACGACCNCTTCCGGACNAGCCCCTCCNAGACAAAAGGTGAGACGGATCAACAACACTTCTGCGACGCNGCAACGAACAGGGACACCAGCGGTGAGCNANGATNGCCGATCAAAACCGTAAACGGCACGGATACNGCNCCNAGAAAAGGAGCAGCATGGCGGCATCCATNNTCCAGGATGACNCGTATACCCACCGGCCAGAACAAACAAGACAAGCGGANAGCTACGNCGCGCCATAACAACAGCGGCCGCACAAGAACTNCNGATCACAGCGGAACACACGGAANAAGNAAANGCACAGCNAACGAANANAA]
[+] EMBL AL695963 [AGATCGGCCCNGGTGTTAACGAAACGAACCGAGGTCGCCNAATCGGTGAATGAATNAGCCAACAAAAATCCGCGGGGAAAAAGAAGGGGAACTTTTGTTTTGTTTTTTAAGTTGTTTTAGTCACTGTAAGAAAACTGAAGCGACTCAGTTCGGTTTTTGGAGAGATCGAGCGTAAGCGTATGTGACAATAAAAATGGCACCACCATCCACACGGTGCAGAACATTGATCGCATGCATTGAGGTTAGGCCGGTAAAGTCCACCCGTTATTCTGCNACCGANCTGTGCCACTAGTTGTGTNAGGGATAGAGTAGACGAGTTAGCAATACCCTTAGTAGCGCAATAGTTAAANCCCGATNCTTCACCATACAACCCCCCGTATCCCTCCCCTCTTCCCGGAGGTCCCGGGTATGAAGGTNTTCTTTGAGTGCCCACAAGTCTGCTACTACACNCAACAACATNGCACACACCAACCACAACCCTTCACAACTCCCCTGTTACCAGGATGAATNACTGGCCCATTGAAGGCTAGAAGCAGNANCTTGATCCTGAAATGGGTNAGGNAGATAGCAGATAGTNGTNGTACAACGTCCTCGTAGTCCGGCGTANCAAANACANCNTTNGNNCAAATNGCAAACGAAAATTCCCCAAAACGCACGACACGACCNCTTCCGGACNAGCCCCTCCNAGACAAAAGGTGAGACGGATCAACAACACTTCTGCGACGCNGCAACGAACAGGGACACCAGCGGTGAGCNANGATNGCCGATCAAAACCGTAAACGGCACGGATACNGCNCCNAGAAAAGGAGCAGCATGGCGGCATCCATNNTCCAGGATGACNCGTATACCCACCGGCCAGAACAAACAAGACAAGCGGANAGCTACGNCGCGCCATAACAACAGCGGCCGCACAAGAACTNCNGATCACAGCGGAACACACGGAANAAGNAAANGCACAGCNAACGAANANAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7221#0 CCGCACGCCGTGAACCACCGGTACGCGCGGGCAGAACAGCCGGTCCAGTATCAGCAGCAG 60
consensus_7221#1 ------------------------------------------------------------
consensus_7221#0 CAGCAGCAGAAGCAGCACCATTACTACGGTGCTCCCCGAGCCGGCTCCTCGACACGCTTC 120
consensus_7221#1 ------------------------------------------------------------
consensus_7221#0 CTCGACCGAAGCCGCACACTGTACATAGTTGAGTAGGTGGGACGAATCCTAAGGGTCGTC 180
consensus_7221#1 ------------------------------------------------------------
consensus_7221#0 GTGTGTATCAGCACACCGTAAGACTAATGGGACACATTACTAAGGCAATGTTAGGCTGTA 240
consensus_7221#1 ------------------------------------------------------------
consensus_7221#0 AGGTAGGAGGGTAATTCCTTTGCGCGAGTATATGTGAATGACTTATGTGTGTGTGGATGC 300
consensus_7221#1 ------------------------------------------------------------
consensus_7221#0 GAATGATTGCGAATGGTTGCACGAGTGATATGAGAGTTTCTTGTAGGGCTAAGCATATAA 360
consensus_7221#1 ------------------------------------------------------------
consensus_7221#0 TTCCACTCCCTCGACATGAGCGGCCTAGAGGTTCCTAACCAGCATGGGGGAGGGGGGGGG 420
consensus_7221#1 ------------------------------------------------------------
consensus_7221#0 GGGGCGAGAGTTGCTTGTGTGTGTGTCAAACGAAACCGAACCGAGGTCG--GAATCGGTG 478
consensus_7221#1 ------AGATCGGCCCNGGTGTT-----AACGAAAC-GAACCGAGGTCGCCNAATCGGTG 48
*** ** **** ******** ************ ********
consensus_7221#0 AATGAA-AAGCCAACAAAAATCCGCGGGGAAAAAGAAGGGGAACTTTTGTTTTGTTTTTT 537
consensus_7221#1 AATGAATNAGCCAACAAAAATCCGCGGGGAAAAAGAAGGGGAACTTTTGTTTTGTTTTTT 108
****** ****************************************************
consensus_7221#0 AAGTTGTTTTAGTCACTGTAAGAAAACTGAAGCGACTCAGTTCGGTTTTTGGAGAGATCG 597
consensus_7221#1 AAGTTGTTTTAGTCACTGTAAGAAAACTGAAGCGACTCAGTTCGGTTTTTGGAGAGATCG 168
************************************************************
consensus_7221#0 AGCGTAAGCGTATGGAA--ATAAAAATGGCACCACCATCCACACGGTGCAGAACATTGAT 655
consensus_7221#1 AGCGTAAGCGTATGTGACAATAAAAATGGCACCACCATCCACACGGTGCAGAACATTGAT 228
************** * *****************************************
consensus_7221#0 CGCATGCATTGAGGTTAGGCCGGTAAAGTCCACCCGTTATTCTGCA-CCGAGCTGTGCCA 714
consensus_7221#1 CGCATGCATTGAGGTTAGGCCGGTAAAGTCCACCCGTTATTCTGCNACCGANCTGTGCCA 288
********************************************* **** ********
consensus_7221#0 CTAGTTGTGTTTTAGGGATAGAGTAGACGAGTTAGCAATACCCTTAGTAGCGCAATAGTT 774
consensus_7221#1 CTAGTTGTGT--NAGGGATAGAGTAGACGAGTTAGCAATACCCTTAGTAGCGCAATAGTT 346
********** ***********************************************
consensus_7221#0 AAACCCCGATCTTCACCCAT-CACCCCCCCGT-TCCCTCCCTCTTCCCGCGAGGTGCCGG 832
consensus_7221#1 AAANCCCGATNCTTCACCATACAACCCCCCGTATCCCTCCCCTCTTCCCGGAGGTCCCGG 406
*** ****** * **** ** ******** ******** * ** ***** ****
consensus_7221#0 GT-TGAAG--TTTCTTTGAG-GCC---AAAGTTTTTACTACACCACACA----TGCACAC 881
consensus_7221#1 GTATGAAGGTNTTCTTTGAGTGCCCACAAGTCTGCTACTACACNCAACAACATNGCACAC 466
** ***** ********* *** ** * ******** *** ******
consensus_7221#0 AC-----ACAAACCTACAC----TCCCTGT---CAGGATGA--TACTG--CAGATGAAG- 924
consensus_7221#1 ACCAACCACAACCCTTCACAACTCCCCTGTTACCAGGATGAATNACTGGCCCATTGAAGG 526
** **** *** *** ****** ******** **** * *****
consensus_7221#0 -TAGAGCGAGTGATCTGAATG-GTTGTGTGTGTGTGTGTTTTTGTTGTGTTTGCGTTAAA 982
consensus_7221#1 CTAGAAGCAGNANCTTGATCCTGAAATGGGTNAGGNAGATAGCAGATAGTNGTNGTACAA 586
**** ** *** * ** ** * * * ** ** **
consensus_7221#0 TTTTCTTGTTATG-AACGAATCCAACCCGAAGCCTCGAAGCCTCG-AAGTGCGTTTTCTT 1040
consensus_7221#1 CGTCCTCGTAGTCCGGCGTANCAAANACANCNTTNGNNCAAATNGCAAACGAAAATTCCC 646
* ** ** * ** * * ** * * * ** * ***
consensus_7221#0 GCGGAAGAAGAACACGTGTTGTGCTAAGTAGGCGTTCGCT--------GTTGCGCTGCGT 1092
consensus_7221#1 CAAAACGCACGACACGACCNCTTCCGGACNAGCCCCTCCNAGACAAAAGGTGAGACGGAT 706
* * * ***** * * ** * * ** * * *
consensus_7221#0 CTTCGTGCGTTCCACG-CGACACAGTTGATCG---CTCTAAAAG---GCCAGTA-AATTA 1144
consensus_7221#1 CAACAACACTTCTGCGACGCNGCAACGAACAGGGACACCAGCGGTGAGCNANGATNGCCG 766
* * *** ** ** ** * * * * * * ** * *
consensus_7221#0 ATAGGAAG---AGAGTGAGTGTGTAAGAGAGCAAAGGAGAGATAGATAATACAG-AGCAA 1200
consensus_7221#1 ATCAAAACCGTAAACGGCACGGATACNGCNCCNAGAAAAGGAGCAGCATGGCGGCATCCA 826
** ** * * * * ** * * * ** * * * * * *
consensus_7221#0 TAATAAAATTAAATCCAAATAACAGTCTATCAGTGTCGATAGGA-AAACAGCAAACAAAA 1259
consensus_7221#1 TNNTCCAGGATGACNCGTATACCCACCGGCCAGAACAAACAAGACAAGCGGANAGCTACG 886
* * * * * *** * * *** * * ** ** * * * * *
consensus_7221#0 ACCC-------------------------------------------------------- 1263
consensus_7221#1 NCGCGCCATAACAACAGCGGCCGCACAAGAACTNCNGATCACAGCGGAACACACGGAANA 946
* *
consensus_7221#0 --------------------------
consensus_7221#1 AGNAAANGCACAGCNAACGAANANAA 972
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||