These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7223#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 634 fasta sequence [CCGCCCACGCGTCCGAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAGGGGGGGA-TTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTAATGTTCCCTTTCTCCCCGTTTTTGGCAACTGATTGCAGACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACAAAAAAAGAACACAACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCGACTCCGCACCATCATGCTGGTGCGCTTTTTTTAACTGTACTTTAATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATTCCGTAAACTTTTAGTTACGTTTTTTTTTCGTTCTACTGTGTAAGATCATTTACTTTACACGCTTGCGCTTATCTTTCGCGGCTAACATACTGCGCTTTTCATCTGGCGGCCGTT] [+] EMBL BM600560 [CCGCCCACGCGTCCGAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAGGGGGGGATTTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTAATGTTCCCTTTCTCCCCGTTTTTGGCAACTGATTGCAGACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCT ] [+] EMBL BX617672 [ AAAGGGCACTGTTAGAGGGGGGGA TTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTAATGTTCCCTTTCTCCCCGTTTTTGGCAACTGATTGCAGACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACAAAAAAAGAACACAACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCGACTCCGCACCATCATGCTGGTGCGCTTTTTTTAACTGTACTTTAATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATTCCGTAAACTTTTAGTTACGTTTTTTTTTCGTTCTACTGTGTAAGATCATTTACTTTACACGCTTGCGCTTATCTTTCGCGGCTAACATACTGCGCTTTTCATCTGGCGGCCGTT] [+] EMBL BX618547 [ AAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTAATGTTCCCTTTCTCCCCGTTTTTGGCAACTGATTGCAGACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACAAAAAAAGAACACAACAAAACGTTTATCAAAAACGTTGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCGACTCCGCACCATCATGCTGGTGCGCTTTTTTTAACTGTACTTTAATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATTCCGTAAAC ] [+] EMBL BX616399 [ TTGCAGACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACAAAAAAAGAACACAACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCTTTCAAAGAAATTGTTGTTTTAGT ] consensusID : consensus_7223#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [CAAGAATCCCCACGAGGTTATTGACCATGCACGAATTAGATCNTTAGTGGGAGCGGGTGGAGCGGGAGAGGGCCAAGCAAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAAGGGGGGATTTTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTGGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTAATGTTCCCTTTTTCCCCGTTTTTGGCAACTGCCGGGGTACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACGAAAAAAAGGAACACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCCACTCCGCACCATCATGCTGCTGGTGCGTATTTTTTTAACTGTACTTTAATGTTTTACACGCT] [+] EMBL BX466210 [CAAGAATCCCCACGAGGTTATTGACCATGCACGAATTAGATCNTTAGTGGGAGCGGGTGGAGCGGGAGAGGGCCAAGCAAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAAGGGGGGATTTTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTGGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTAATGTTCCCTTTTTCCCCGTTTTTGGCAACTGCCGGGGTACGTTGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACGAAAAAAAGGAACACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCCACTCCGCACCATCATGCTGCTGGTGCGTATTTTTTTAACTGTACTTTAATGTTTTACACGCT] consensusID : consensus_7223#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence [TGTGAGGATGACTNTGAGGCTGCAGCCGGTGTCAGGGTTCAGGGACGCAGGATGCGCCAAAGCGGAGGGCGGAATGTACATTCTATAAAACGGGAAGTCTCTCAGTAGACAGTGCAACAAAACGCGGCAAAGCAAACGACATTCCGGTGTACATTCAGGGATTTTTATGAGCATAACATTATGAGCGGTCGGGAACATGCGCAATGTTGCAGCCCCAGTTCGTTTCGTATCANGACGCAGTTTTAGCACGTTGTGTGTTAGATGTTGACCATGCACGAATTAGATTTTAGTGGGAGCGGGTGGGGCGGGAGAGGGTAAAGCAAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAGGGGGGGATTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTTAATGTTCCCCTTTTCTCCCCGTTTTTNGG] [+] EMBL BX626126 [TGTGAGGATGACTNTGAGGCTGCAGCCGGTGTCAGGGTTCAGGGACGCAGGATGCGCCAAAGCGGAGGGCGGAATGTACATTCTATAAAACGGGAAGTCTCTCAGTAGACAGTGCAACAAAACGCGGCAAAGCAAACGACATTCCGGTGTACATTCAGGGATTTTTATGAGCATAACATTATGAGCGGTCGGGAACATGCGCAATGTTGCAGCCCCAGTTCGTTTCGTATCANGACGCAGTTTTAGCACGTTGTGTGTTAGATGTTGACCATGCACGAATTAGATTTTAGTGGGAGCGGGTGGGGCGGGAGAGGGTAAAGCAAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGAGGGGGGGATTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTTAATGTTCCCCTTTTCTCCCCGTTTTTNGG] consensusID : consensus_7223#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 411 fasta sequence [CCGCCCACGCGTCCGGGCTTATATCCTAAAAACGAAAAAAAGGAACACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCCACTCCGCACCATCATGCTGCTGGTGCGTATTTTTTTAACTGTACTTTAATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATTCCGTAAACTTTTAGTTACGTTTTTTTTTTCGTTCTACTGTGTAAGATCATTTACTTTACACGCTTGCACTTATCTTTCGCGGCTAACATACTGCGCTTTTCATCTGGCGGCCGTTGCTTTTTTGGCGTTTTTGAAAGCGTGCTAGAG] [+] EMBL BM614222 [CCGCCCACGCGTCCGGGCTTATATCCTAAAAACGAAAAAAAGGAACACAAAACGTTTATCAAAAACGTCGGCAATTACTGTAAAACAGCCATTTTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCTTGTTCGTTTTGTTATAACAACCGCCACTCCGCACCATCATGCTGCTGGTGCGTATTTTTTTAACTGTACTTTAATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATTCCGTAAACTTTTAGTTACGTTTTTTTTTTCGTTCTACTGTGTAAGATCATTTACTTTACACGCTTGCACTTATCTTTCGCGGCTAACATACTGCGCTTTTCATCTGGCGGCCGTTGCTTTTTTGGCGTTTTTGAAAGCGTGCTAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7223#0 ------------------------------------------------------------ consensus_7223#3 ------------------------------------------------------------ consensus_7223#1 CAAGAATCCCCACGAGGTTATTGACCATGCACGAATTAGATCNTTAGTGGGAGCGGGTGG 60 consensus_7223#2 ------------------------------------------------------------ consensus_7223#0 ----CCGCCCACGCGTCCGAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGA 56 consensus_7223#3 ------------------------------------------------------------ consensus_7223#1 AGCGGGAGAGGGCCAAGCAAACACATCAGAGGAAGGGGCAACCAAAAGGGCACTGTTAGA 120 consensus_7223#2 ------------------------------------------------------------ consensus_7223#0 GGGGGGGATTTTTTTTTT--CGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTT 114 consensus_7223#3 ------------------------------------------------------------ consensus_7223#1 AGGGGGGATTTTTTTTTTTTCGCGTAGAACATAATTACTACTACTTTTAGGGCACTGTTT 180 consensus_7223#2 ------------------------------------------------------------ consensus_7223#0 AGTGGACGCCTTCGCTCCCGATGGCTGCACAATTTGTAAGAAATGGTGAACTCTCCCTCA 174 consensus_7223#3 ------------------------------------------------------------ consensus_7223#1 AGTGGACGCCTTCGCTCCCGATGGCTGCACAATTGGTAAGAAATGGTGAACTCTCCCTCA 240 consensus_7223#2 ------------------------------------------------------------ consensus_7223#0 CCGTTCTTGCACTCGTTAATGTTCCCTTTCTCCCCGTTTTTGGCAACTGATTGCAGACGT 234 consensus_7223#3 ------------------------------------------------------------ consensus_7223#1 CCGTTCTTGCACTCGTTAATGTTCCCTTTTTCCCCGTTTTTGGCAACTGCCGGGGTACGT 300 consensus_7223#2 ----------------------------TGTGAGGATGACTNTGAGGCTGCAGCCGGTGT 32 consensus_7223#0 TGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACAA 294 consensus_7223#3 ---------------------CCGCCCACGCGTC----CGGGCTTATATCCTAAAAACGA 35 consensus_7223#1 TGTAACCGTTGCGAACGATCTCCTGTAAGGAGTTGAAATCGGCTTATATCCTAAAAACGA 360 consensus_7223#2 CAGGGTTCAGGGACGCAGGATGCGCCAAAGCGGAGGGCGGAATGTACATTCTATAAAACG 92 * * * * ** ** *** *** consensus_7223#0 AAAAAGAACACAACAAAACGTTTATCAAAA-ACGTCGGCAATTACTGTAAAACAGCCATT 353 consensus_7223#3 AAAAAAGGAACA-CAAAACGTTTATCAAAA-ACGTCGGCAATTACTGTAAAACAGCCATT 93 consensus_7223#1 AAAAAAGGAACA-CAAAACGTTTATCAAAA-ACGTCGGCAATTACTGTAAAACAGCCATT 418 consensus_7223#2 GGAAGTCTCTCAGTAGACAGTGCAACAAAACGCGGCAAAGCAAACGACATTCCGGTGTAC 152 ** ** * * ** * ***** ** * ** * * * consensus_7223#0 TTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCT-TGTTCGTTTTGTTATAA 412 consensus_7223#3 TTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCT-TGTTCGTTTTGTTATAA 152 consensus_7223#1 TTCCGTACGCGTTCAAAGAAATTGTTGTTTTAGTTTTCATCT-TGTTCGTTTTGTTATAA 477 consensus_7223#2 ATTCAGGGATTTTTATGAGCATAACATTATGAGCGGTCGGGAACATGCGCAATGTTGCAG 212 * * ** * ** * * ** ** * ** **** * consensus_7223#0 CAACCGC-GACTCCGCACCATCATGCTG-----GTGCGC-TTTTTTTAACTGT--ACTTT 463 consensus_7223#3 CAACCGC-CACTCCGCACCATCATGCTGCT--GGTGCGTATTTTTTTAACTGT--ACTTT 207 consensus_7223#1 CAACCGC-CACTCCGCACCATCATGCTGCT--GGTGCGTATTTTTTTAACTGT--ACTTT 532 consensus_7223#2 CCCCAGTTCGTTTCGTATCANGACGCAGTTTTAGCACGTTGTGTGTTAGATGTTGACCAT 272 * * * * ** * ** * ** * * ** * * *** *** ** * consensus_7223#0 A-ATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATT-- 520 consensus_7223#3 A-ATGTTTTACACGCTTCAAGGGTGCAGCATCGCCGCATCGGGTTAATCACACGCATT-- 264 consensus_7223#1 A-ATGTTTTACACGCT-------------------------------------------- 547 consensus_7223#2 GCACGAATTAGATTTTAGTGGGAGCGGGTGGGGCGGGAGAGGGTAAAGCAAACACATCAG 332 * * *** * * consensus_7223#0 ------------CCGTAA----ACTTTTAGTTACGT---TTTTTTTT-CGTTCTACTGTG 560 consensus_7223#3 ------------CCGTAA----ACTTTTAGTTACGT---TTTTTTTTTCGTTCTACTGTG 305 consensus_7223#1 ------------------------------------------------------------ consensus_7223#2 AGGAAGGGGCAACCAAAAGGGCACTGTTAGAGGGGGGGATTTTTTTTTTCGCGTAGAACA 392 consensus_7223#0 TAAGATCATTTACTTT----ACACGCTTGCGCTTAT-CTTTCGCGGCTAACATACTGCGC 615 consensus_7223#3 TAAGATCATTTACTTT----ACACGCTTGCACTTAT-CTTTCGCGGCTAACATACTGCGC 360 consensus_7223#1 ------------------------------------------------------------ consensus_7223#2 TAATTACTACTACTTTTAGGGCACTGTTTAGTGGACGCCTTCGCTCCCGATG-GCTGCAC 451 consensus_7223#0 TTTTCATCTGG--CGGCCGTT--------------------------------------- 634 consensus_7223#3 TTTTCATCTGG--CGGCCGTTGCTTTTTTGGCGTTTTTGAAAGCGTGCTAGAG------- 411 consensus_7223#1 ------------------------------------------------------------ consensus_7223#2 AATTTGTAAGAAATGGTGAACTCTCCCTCACCGTTCTTGCACTCGTTTAATGTTCCCCTT 511 consensus_7223#0 ----------------- consensus_7223#3 ----------------- consensus_7223#1 ----------------- consensus_7223#2 TTCTCCCCGTTTTTNGG 528 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||