These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 957 fasta sequence [CCACCACCCATCCCTACGCAGAATGCCCGAGNNATCACTAACTTGAATCGACTCTTTCTTCCAAACTCCCGGGTGTACTGTTTGCGTTGTCTGGTAAAAAACAGCTTTTCTCTAACAGCAACTGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACAAAGCCAGCNCAAGCAAAAGGGTGGGCCTAAAACCCCCGAAGTACAGCATACGGCACCGCTCGCTCGTCTGTGACGATCGGTACGGAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCG-AT--TTTGAGAAGC-TGCTCG-AGCTTCCCGC-ATCGAGTGCGAGCCACTTTCTGCTTAGCTCGGAGAAAC-GCTGGCTACAACCGGACACCGATCTACC-GGGCGAGGATGAAAAGAACCGCTACAGTGAGTACTTCCGCATCGACACGAAGCTGCTGAACGCCAG-CCTTGGGTGCATCCCGTT-CTACGAGCGACACGGA-TACGACGAAACACTATTCAGCACGCTGG-AGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGCTATCGTCGAGCGTCAAAGTCGGACCAGTTTCCCAGAAGCAAAAAGAAAACATGCCTCCTCCGCCAAGGAAACCGCAACCAACGCCATGTTTCGTTGGGAAATTTGCTAACCCGAAGCTGAATGATTCCGTCGGTGGGACAGAAACAAAGCAATTGCATGTATCGAAAGAGCCAGTTAAGCCCGTGGAAGCCAAGTTGAGCGAGCTTAAAATTGAACCAGAAGTGAGTAAAACTGTCCCCAAAATCGTTCCCAAAGTTGAACCAACCGTTGCGACACCTCAACGAATCCGTCTCCACAAGGCTCGGGA] [+] EMBL AL932724 [CCACCACCCATCCCTACGCAGAATGCCCGAGNNATCACTAACTTGAATCGACTCTTTCTTCCAAACTCCCGGGTGTACTGTTTGCGTTGTCTGGTAAAAAACAGCTTTTCTCTAACAGCAACTGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACAAAGCCAGCNCAAGCAAAAGGGTGGGCCTAAAACCCCCGAAGTACAGCATACGGCACCGCTCGCTCGTCTGTGACGATCGGTACGGAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCG ATTNTTTGAGAAGCTTGNTCGCAGCTTCCCGCGATCGAGTGCGAGCCACTTTCTGCTTAGCTCCGAGAAACAGCTGGCTACAACCGGACACCGATCTACCTGGGCGAGGATGAAAAGAACCGCTTCAGTGAGTACTTCCGCATCGATACGAAGCTGCTGAACGCCAGCCCTTGGGTGCATCCCGTTACTACGAGCGACACGGATTACGACGAAACACTGTTCAGCACGCTGGNAGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTC ] [+] EMBL BM586587 [ ccgggcAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCG AT TTTGAGAAGC TGCTCG AGCTTCCGGC ATCGAGTGCGAGCCACTTTCTGCTTAGCTCGGAGAAAC GCTGGCTACAACCGGACACCGATCTACC GGGCGAAGATGAAAAGAACCGCTACAGTGAGTACTTCCGCATCGACACGAAGCTGCTGAACGCCAG CCTTGGGTGCATCCCGTT CTACGAGCGACACGGA TACGACGAAACACTATTCAGCACGCTGG AGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGCTATCGTCGAGCGTCAAAGTCGGACCAGTTTCCCAGAAGCAAAAAGAAAACATGCCTCCTCCGCCAAGGAAACCGCAACCAACGCCATGTTTCGTTGGGAAATTTGCTAACCCGAAGCTGAATGATTCCGTCGGTGGGACAGAAACAAAGCAATTGCATGTATCGAAAGAGCCAGTTAAGCCCGTGGAAGCCAAGTTGAGCGAGCTTAAAATTGAACCAGAAGTGAGTAAAACTGTCCCCAAAATCGTTCCCA ] [+] EMBL CNS09CQR [ AGACGAACAGCTCCTGGCGGCCGCAT TTTGAGAAGC TGCCCG AGCTTCCCGC ATCGAGTGCGAGCCACTTTCTGCTTAGCTCGGAGAAAC GCTGGCTACAACCGAACACCGATTTACC GGGCGAGGATGAAAAGAACCGCTACAGTGAGTTCTTCCGCATCGACACAAAGCTACTGAACGCCAG CATTGGGTGCATCCCGTT CTACGAGCGACACGGA TACGACGAAACACTATTCAGCACGCTGG AGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGCTATCGTCGAGCGTCAAAGTCGGACCAGTTTCCCAGAAGCACAAAGAAAACATGCCTCCTCCGCCAAGGAAACCGCAACCAACGCCATGTTTCGTTGGGAAATTTGCTAACCCGGAGCTGGATGATTCCGTCGGTGGGACAGAAGCAAAGCAATTGCATGTATCGAAAGAGCAGGTTAAGCCTGTGGAAGCCAAGTTGAGCGAGCTTAAAATCGAACCAGAGGTGAGTTAAACTGTTCCCAAAATCGTTCCCAAAGTTGAACCAACCGTTGCGACACCTCAACGAATCCGTCTCCACAAGGCTCGGGA] [-] EMBL CNS09CQS [ CCGTT CTACGAGCAACACGGA TACGACGAAACACTATTCAGCACGCTGG AGCTTAATCTAATGCGACAAAAGGCGGAAAAACATACGGACAAGTTCCAGCAAACCTTTGCCGACCTGCTATCGTCGAGCGTCAAAGTCGGACCAGTTTCCCAGAAGAAAAAAGAAAACATGCCTCCTCCGCCAAGGAAACCGCAACCAACGCCATGTTTCGTTGGGAAATTTGCTAAC ] consensusID : consensus_7224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence [GATCGCCCGAGGTTTGAATCGATTCTTTCCTTCCCAAACTCCCGGTGTACTGTTTGCG-TGTCTGGTAAAAAACAGCTTTTCTCTAACAGAATGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACCAAAGCCAGCCAAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACGGCACCGCTCGTCG-TTGTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTCCGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGACTGAAAAGAACCGCTTCAGTGAGTACTATCCGCATCGATACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCGTTCTACGCAGCGACACGGATACGACGCAAACACTGTTCAGCACGCTGGAGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGC] [+] EMBL AL931789 [GATCGCCCGAGGTTTGAATCGATTCTTTCCTTCCCAAACTCCCGGTGTACTGTTTGCG TGTCTGGTAAAAAACAGCTTTTCTCTAACAGAATGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACCAAAGCCAGCCAAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACGGCACCGCTCGTCG TTGTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTCCGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGACTGAAAAGAACCGCTTCAGTGAGTACTATCCGCATCGATACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCGTTCTACGCAGCGACACGGATACGACGCAAACACTGTTCAGCACGCTGGAGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGC] [+] EMBL BX619504 [ TTCTTTCCTTCCCAAACTCCCGGTGTACTGTTTGCGTTGTCTGGTAAAAAACAGCTTTTCTCTAACAGAATGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACCAAAGCCAGCCAAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACGGCACCGCTCGTCGTTTGTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTCCGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGA TGAAAAGAACCGCTTCAGTGAGTACT TCCGCATCGATACGAAGCTGCTGAACGCCAGCCTNGGGTGCATCCCGTCCTAC ] consensusID : consensus_7224#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [GATCGCCCCGAGGTTGCGTTGTCTGGTAAAAAACAGCTTTTCTCTAACAGAATGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACCAAAGCCAGCCAAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACGGCACCGCTCGTCGTTTGTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTCCGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGATGAAAAGAACCGCTTCAGTGAGTACTTCCGCATCGATACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCGTTCTACGAGCGACACGGATACGACGAAACACTGTTCAGCACGCTGGAGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTT] [+] EMBL AL930029 [GATCGCCCCGAGGTTGCGTTGTCTGGTAAAAAACAGCTTTTCTCTAACAGAATGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCACCACCACCAAAGCCAGCCAAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACGGCACCGCTCGTCGTTTGTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGACCGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGCCGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTCCGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGATGAAAAGAACCGCTTCAGTGAGTACTTCCGCATCGATACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCGTTCTACGAGCGACACGGATACGACGAAACACTGTTCAGCACGCTGGAGCTTAATCTAATGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7224#1 -----------------------------GATCGCCCGAGGTTTGAATCGATTCTTTCCT 31 consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 CCACCACCCATCCCTACGCAGAATGCCCGAGNNATCACTAACTTGAATCGACTCTTTC-T 59 consensus_7224#1 TCCCAAACTCCCGGTGTACTGTTTGCGT-GTCTGGTAAAAAACAGCTTTTCTCTAACAGA 90 consensus_7224#2 ----GATCGCCCCGAG----GTTGCGTT-GTCTGGTAAAAAACAGCTTTTCTCTAACAGA 51 consensus_7224#0 TCCAAACTCCCGGGTGTACTGTTTGCGTTGTCTGGTAAAAAACAGCTTTTCTCTAACAGC 119 * ** * * *** * ****************************** consensus_7224#1 A--TGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCAC 148 consensus_7224#2 A--TGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCAC 109 consensus_7224#0 AACTGGATAAAGCTTCCTTCGCAGCGAAACGACGTCAGGACAAAGTTCACAAAAAACCAC 179 * ********************************************************* consensus_7224#1 CACCACCAAAGCCAGCC-AAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACG 207 consensus_7224#2 CACCACCAAAGCCAGCC-AAGCAAAAGGGTGGCCCTAAACCCCCCGAAGTACAGCATACG 168 consensus_7224#0 CACCAC-AAAGCCAGCNCAAGCAAAAGGGTGGGCCTAAAACCCCCGAAGTACAGCATACG 238 ****** ********* ************** ****** ******************** consensus_7224#1 GCACCGCTCG-TCGTT-GTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGAC 265 consensus_7224#2 GCACCGCTCG-TCGTTTGTGACGATCGGTACGGCAAGCGCCAGATTCAGCAAAACTGGAC 227 consensus_7224#0 GCACCGCTCGCTCGTCTGTGACGATCGGTACGG-AAGCGCCAGATTCAGCAAAACTGGAC 297 ********** **** **************** ************************** consensus_7224#1 CGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGC 325 consensus_7224#2 CGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGC 287 consensus_7224#0 CGAAGAGCGGAATCTTCCATCGAGCGACAGCGACACGGAAGACGAACAGCTGCTGGCGGC 357 ************************************************************ consensus_7224#1 CGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTC 385 consensus_7224#2 CGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTC 347 consensus_7224#0 CGATTTTGAGAAGCTGCTCGAGCTTCCCGCATCGAGTGCGAGCCACTTTCTGCTTAGCTC 417 ************************************************************ consensus_7224#1 CGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGACTGAAAAGAACCGCT 445 consensus_7224#2 CGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGA-TGAAAAGAACCGCT 406 consensus_7224#0 GGAGAAACGCTGGCTACAACCGGACACCGATCTACCGGGCGAGGA-TGAAAAGAACCGCT 476 ******************************************** ************** consensus_7224#1 TCAGTGAGTACTATCCGCATCGATACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCG 505 consensus_7224#2 TCAGTGAGTACT-TCCGCATCGATACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCG 465 consensus_7224#0 ACAGTGAGTACT-TCCGCATCGACACGAAGCTGCTGAACGCCAGCCTTGGGTGCATCCCG 535 *********** ********** ************************************ consensus_7224#1 TTCTACGCAGCGACACGGATACGACGCAAACACTGTTCAGCACGCTGGAGCTTAATCTAA 565 consensus_7224#2 TTCTACG-AGCGACACGGATACGACG-AAACACTGTTCAGCACGCTGGAGCTTAATCTAA 523 consensus_7224#0 TTCTACG-AGCGACACGGATACGACG-AAACACTATTCAGCACGCTGGAGCTTAATCTAA 593 ******* ****************** ******* ************************* consensus_7224#1 TGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGC--- 622 consensus_7224#2 TGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTT------------- 570 consensus_7224#0 TGCGACAAAAGGCGGAAATACATACGAACAAGTTCCAGCAAACCTTTGCCGACCAGCTAT 653 *********************************************** consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 CGTCGAGCGTCAAAGTCGGACCAGTTTCCCAGAAGCAAAAAGAAAACATGCCTCCTCCGC 713 consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 CAAGGAAACCGCAACCAACGCCATGTTTCGTTGGGAAATTTGCTAACCCGAAGCTGAATG 773 consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 ATTCCGTCGGTGGGACAGAAACAAAGCAATTGCATGTATCGAAAGAGCCAGTTAAGCCCG 833 consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 TGGAAGCCAAGTTGAGCGAGCTTAAAATTGAACCAGAAGTGAGTAAAACTGTCCCCAAAA 893 consensus_7224#1 ------------------------------------------------------------ consensus_7224#2 ------------------------------------------------------------ consensus_7224#0 TCGTTCCCAAAGTTGAACCAACCGTTGCGACACCTCAACGAATCCGTCTCCACAAGGCTC 953 consensus_7224#1 ---- consensus_7224#2 ---- consensus_7224#0 GGGA 957 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||