These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1373 fasta sequence [TACATATATATATTAGCAACTTTTACTTAACTAACAAACGCACGCACACTTTCGCTCTATTTCCTTGGGAATGTCCTTGGCACCATCCACTACTGGCCGCCGGCCGTTCCAGTGCCGCTTTGGTTTCGCGCTTGATCGTTTGCGCAATTATCCGCAGCACGTGCGGATCGGTTATCTGGTCGCAAAGCTGCTGGTAGCATCCGTTCATGATGTCTTTCACCAGGGAAGCGTCCGTTGCCGCTGGGCGATGCTGTGCCGCCTGCTTCAGTTCATCACATTCTCGCTGCAGCTGCTCCAGCTGCTGGCGCCACGATTCCGAACGTTGATGTTCTTGCTCCAACTGTTCTTTGAAACGCGTCCGGTCATGCCGAGCTTCTGCTAGCTGCTCGCGGGCTGCGTTCATTTCTTTGGTCGCATCTTCAGTGGTTAGTTTTTCCTCTGCAAGCTGTTTTTCAAGCGCATCGAGCGTTGCTTTCTGCCGTGCCGACTCCGGCATTGCTTGCTTCGAGCTGTAACTCCAAACGGCGGATGGTTTCCTTGTGGTGGCGTTCAAGACTCTTCCAGCGTTTTGATTTGTTGCTCCAGCTTGGCGTTTGTCTCTCGCGTTCCGTCTCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATTGGTACGCTTCAGTTCACGTTCCACGCAGCACCACGATTCGATCGCAGCAAGCAACGCCTGTCGCTCGGTTTCGGCTTCGATCAGCACGCTCCAAAACTCGTTCGAATCATCCGCCCGGAACTGCAGATAGTTCTGTTTGAGGAAAAGCTTCGTGTCGGAGGACAGTGTCACCGTGG-CCAGTACATCCGTCTT-CGTGCGGTATAGCAGCAATCGGTGA-CCGGCGGAGGAGTTGAGCAACGCAAGTCCCACGCTGCCCAGGTAAACATTGTCACGATCAACGAGCTTGTAGGCCGAAACGACCGATGCCCGTACGATGGTCCATTCCGGAGGAGCTTTGGACGACTCTTCCGCCGTCTCGTCTTCGGCCGGTTCGGCGGGAACGTATCGGAAATTGGATGGACCGTAGCGATCGGAGATTTTGACCGGCTTCGGTGCCGCGGAAACGCTCGCACGCTCGCTACTACCTACGCTAGCAGTGCCTTTGGGCGTGAAGCCAAACAGTTTGGCCAGTGTGGAGTTGGCGCTGTTGGAGGGCGTTGGTTTGAAGAATTCTTCGTCATCGGATTCATGGTCCCCGCCTCGCCCAACGTCACCAAACATTGAGGCAGTGGATAAATCGAGGAAAAATAGAGCGATAGAGCGTTATTTAGCGTTATTTGTGGTGCAGTGGAGTAATCGTTTGTTTTGATTGCTTTCTGCCCACGCGTCCGCGG] [+] EMBL CNS09KMY [TACATATATATATTAGCAACTTTTACTTAACTAACAAACGCACGCACACTTTCGCTCTATTTCCTTGGGAATGTCCTTGGCACCATCCACTACTGGCCGCCGGCCGTTCCAGTGCCGCTTTGGTTTCGCGCTTGATCGTTTGCGCAATTATCCGCAGCACGTGCGGATCGGTTATCTGGTCGCAAAGCTGCTGGTAGCATCCGTTCATGATGTCTTTCACCAGGGAAGCGTCCGTTGCCGCTGGGCGATGCTGTGCCGCCTGCTTCAGTTCATCACATTCTCGCTGCAGCTGCTCCAGCTGCTGGCGCCACGATTCCGAACGTTGATGTTCTTGCTCCAACTGTTCTTTGAAACGCGTCCGGTCATGCCGAGCTTCTGCTAGCTGCTCGCGGGCTGCGTTCATTTCTTTGGTCGCATCTTCAGTGGTTAGTTTTTCCTCTGCAAGCTGTTTTTCAAGCGCATCGAGCGTTGCTTTCTGCCGTGCCGACTCCGGCATTGCTTGCTTCGAGCTGTAACTCCAAACGGCGGATGGTTTCCTTGTGGTGGCGTTCAAGACTCTTCCAGCGTTTTGATTTGTTGCTCCAGCTTGGCGTTTGTCTCTCGCGTTCCGTCTCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATTGGTACGCTTCAGTTCACGTTCCACGCAGCACCACGATTCGATCGCAGCAAGCAACGCCTGTCGCTCGGTTTCGGCTTCGATCAGCACGCTCCAAAACTCGTTCGAATCATCCGCCCGGAACTGCAGATAGTTCTGTTTGAGGAAAAGCTTCGTGTCGGAGGACAGTGTCA ] [-] EMBL BM614367 [ tgGTTCACGTTCCACGCAGCACCACGATTCGATCGCAGCAAGCAACGCCTGTCGCTCGGTTTCGGCTTCGATCAGCACGCTCCAAAACTCGTTCGAATCATCCGCCCGGAACTACAGATAGTTCTGTTTGAGGAAAAGCTTCGTGTTGGAGGACAGTGTCACCGTGG CCAGTACATCCGTCTT CGTGCGGTATAGCAGCAATCGGTGA CCGGCGGAGGAGTTGAGCAACGCAAGTCCTACGTTGCCCAGGTAAACATTGTCACGATCAACGAGCTTGTAGGCCGAAACGACCGATGCCCGTACGATGGTCCATTCCGGAGGAGCTTTGGACGATTCTTCCGCCGTCTCGTCTTCGGCCGGTTCGGCGGGAACGTATCGGAAATTGGATGGACCGTAGCGATCGGAGATTTTGACCGGCTTCGGTGCCGCGGAAACGCTCGCACGCTCGCTACTACCTACGCTAGCAGTGCCTTTGGGCGTGAAGCCAAACAGTTTGGCCAGTGTGGAGTTGGCGCTGTTGGAGGGCGTTGGTTTGAAGAATTCTTCGTCATCGGATTCATGGTCCCCGCCTCGCCCAACGTCACCAAACATTGAGGCAGTGGATAAATCGAGGAAAAATAGAGCGATAGAGCGTTATTTAGCGTTATTTGTGGTGCAGTGGAGTAATCGTTTGTTTTGATTGCTTcgg ] [-] EMBL BM595635 [ ACGATTCGATCGCAGCAAGCAACGCCTGTCGCTCGGTTTCGGCTTCAATCAGCACGCTCCAAAACTCGTTCGAATCATCCGCCCGGAACTGCAGATAGTTCTGTTTGAGGAAAAGCTTCGTGTCGGAGGACAGTGTCACCGTGG CCAGTACATCCGTCTT CGTGCGGTATAGCAGCAATCGGTGA CCGGCGGAGGAGTTGAGCAACGCAAGTCCCACGCTGCCCAGGTAAACATTGTCACGATCAACGAGCTTGTAGGCCGAAACGACCGATGCCCGTACGATGGTCCATTCCGGAGGAGCTTTGGACGACTCTTCCGCCGTCTCGTCTTCGGCCGGTTCGGCGGGAACGTATCGGAAATTGGATGGACCGTAGCGATCGGAGATTTTGACCGGCTTCGGTGCCGCGGAAACGCTCGCACGCTCGCTACTACCTACGCTAGCAGTGCCTTTGGGCGTGAAGCCAAACAGTTTGGCCAGTGTGGAGTTGGCGCTGTTGGAGGGCGTTGGTTTGAAGAATTCTTCGTCATCGGATTCATGGTCCCCGCCTCGCCCAACGTCACCAAACATTGAGGCAGTGGATAAATCGAGGAAAAATAGAGCGATAGAGCGTTATTTAGCGTTATTTGTGGTGCAGTGGcgg ] [-] EMBL BM596820 [ CGTGGCCCAGTACATCCGTCTTCCGTGCGGTATAGCAGCAATCGGTGACCCGGCGGAGGAGTTGAGCAACGCAAGTCCCACGCTGCCCAGGTAAACATTGTCACGATCAACGAGCTTGTAGGCCGAAACGACCGATGCCCGTACGATGGTCCATTCCGGAGGAGCTTTGGACGACTCTTCCGCCGTCTCGTCTTCGGCCGGTTCGGCGGGAACGTATCGGAAATTGGATGGACCGTAGCGATCGGAGATTTTGACCGGCTTCGGTGCCGCGGAAACGCTCGCACGCTCGCTACTACCTACGCTAGCAGTGCCTTTGGGCGTGAAGCCAAACAGTTTGGCCAGTGTGGAGTTGGCGCTGTTGGAGGGCGTTGGTTTGAAGAATTCTTCGTCATCGGATTCATGGTCCCCGCCTCGCCCAACGTCACCAAACATTGAGGCAGTGGATAAATCGAGGAAAAATAGAGCGATAGAGCGTTATTTAGCGTTATTTGTGGTGCAGTGGAGTAATCGTTTGTTTTGATTGCTTTCTGCCCACGCGTCCGCGG] [-] EMBL CNS09KMX [ AGCAGTGCCTTTGGGCGTGAAGCCAAACAGTTTGGCCAGTGTGGAGTTGGCGCTGTTGGAGGGCGTTGGTTTGAAGAATTCTTCGTCATCGGATTCATGGTCCCCGCCTCGCCCAACGTCACCAAACATTGAGGCAGTGGATAAATCGAGGAAAAATAGAGCGATAGAGCGTTATTTAGCGTTATTTGTGGTGCAGTGGAGTAATCGTTTGTTTTGATTGCTTTCTGt ] consensusID : consensus_7234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1153 fasta sequence [CAGCACGTGCGGATCGGTTATCTGGTCGCAAAGCTGCTGGTAGCATCCGTTCATGATGTCTTTCACCAGGGAAGCGTCCGTTGCCGCTGGGCGATGCTGTGCCGCCTGCTTCAGTTCATCACATTCTCGCTGCAGCTGGTCCAGCTGCTGGCGCCACGATTCCGAACGTTGATGTTCTTGCTCCAACTGTTCTTTGAAACGCGTCCGGTCATGCCGAGCTTCTGCTAGCTGTTCCCGGGCTGCATTCATTTCTTTGGTTGCATCTTCAGTGGTTAGTTTTTCCTCTGCAAGCTGCTTTTCAAGCGCATCGAGCGTTGCTTTCTGCCGTGCCAACTCCGCATTGCTTGCTTCGAGCTGTAACTCCAAACTGCGGATGGTTTCCTTGTGGTGGCGTTCAAGCTCTTCCAGCGTTTTGATTTGTTGCTCCAGCTTGGCGTTTGTCTCTCGCGTTCCGTCCCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATTGGTACGCTTCAGCTCGAGCAGCTTCTCTTCCAGCTCGAGCACTTCGGCTTCCTTGTCGGCTACGCTCTGGGGACGCTCCGACGAACCCGACGACCCTCCCTGGTGCAGGTTAAGCAAATCGATCCGATCGAGCACACGGTCAAGCTTCGATTCGAGCTTTGTCAGATTCATGCGCATTTCCGTGTTTTGCACGGGGTTTTCGCTCATAATCAAGTTGAAATTCACATCCGCCATCGTCGTGCCATTCCCCTGACTTGTGACAGTCCCACCGTGGCCCGCTGGGACCATTCCTGCCAGCGGAACCATCTGCATACCGACCGCCGACGTGTAATTGGGCCGTCGGATCGGTCGCGTCGTAATGGTCTCAATCTTCGAGTCGGACGTATCGGACGAATCGGAGCCGGGTGCGATCGTGGGAATCGGGGGCGGTTTCACCTTCTCCGGCAGGGGCATCGCTTGCCCACCCATCCGTGCCATGCGTGCCGCCAGCTCGGACCGTTTGCTGTTCGGCGGGTCGGGCGGATCCCGTTCCACCTCCGACAGTGGTTCCTCGACGATCGGTTCACGTTCCACGCAGCACCACGATTCGATCGCAGCAAGCAACGCCTGTCGCTCGGTTTCGGCTTCAATCAGCACGCTCCAAAACTCG] [-] EMBL BM612400 [CAGCACGTGCGGATCGGTTATCTGGTCGCAAAGCTGCTGGTAGCATCCGTTCATGATGTCTTTCACCAGGGAAGCGTCCGTTGCCGCTGGGCGATGCTGTGCCGCCTGCTTCAGTTCATCACATTCTCGCTGCAGCTGGTCCAGCTGCTGGCGCCACGATTCCGAACGTTGATGTTCTTGCTCCAACTGTTCTTTGAAACGCGTCCGGTCATGCCGAGCTTCTGCTAGCTGTTCCCGGGCTGCATTCATTTCTTTGGTTGCATCTTCAGTGGTTAGTTTTTCCTCTGCAAGCTGCTTTTCAAGCGCATCGAGCGTTGCTTTCTGCCGTGCCAACTCCGCATTGCTTGCTTCGAGCTGTAACTCCAAACTGCGGATGGTTTCCTTGTGGTGGCGTTCAAGCTCTTCCAGCGTTTTGATTTGTTGCTCCAGCTTGGCGTTTGTCTCTCGCGTTCCGTCCCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATTGGTACGCTTCAGCTCGAGCAGCTTCTCTTCCAGCTCGAGCACTTCGGCTTCCTTGTCGGCTACGCTCTGGGGACGCTCCGACGAACCCGACGACCCTCCCTGGTGCAGGTTAAGCAAATCGATCCGATCGAGCACACGGTCAAGCTTCGATTCGAGCTTTGTCAGATTCATGCGCATTTCCGTGTTTTGCACGG ] [-] EMBL BX621296 [ AGCTGTAACTCCAAACTGCGGATGG TTCCTTGTGGTGGCGTTCAAGCTCTTCCAGCGTTTTGATTNGTTGCTCCAGCTNGGCGTTTGTCTCTCGCGTTCCGTCCCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATTGGTACGCTTCAGCTCGAGCAGCTTCTCTTCCAGCTCGAGCACTTCGGCTTCCTTGTCGGCTACGCTCTGGGGACGCTCCGACGAACCCGACGACCCTCCCTGGTGCAGGTTAAGCAAATCGATCCGATCGAGCACACGGTCAAGCTTCGATTCGAGCTTTGTCAGATTCATGCGCATTTCCGTGTTTTGCATGCGGTTTTCGCTCATAATCAAGTTGAAATTCACATCCGCCATCGTCGTGCCATTCCCCTGACTTGTGACAGTCCCACCGTGGCCCGCTGGGACCATTCCTGCCAGCGGAACCATCTGCATACCGACCGCCGACGTGTAATTGGGCCGTCGGATCGGTCGCGTCGTAATGGTCTCAATCTTCGAGTCGGACGTATCGGACGAATCGGAGCCGGGTGCGATCGTGGGAATCGGGGGCGGTTTCACCTTCTCCGGCAGGGGCATCGCTTGCCCACCCATCCGTGCCATGCGTGCCGCCAGCTCGGACCGTTTGCTGTTCGGCGGGTCGGGCGGATCCCGTTCCACCTCCGACAGTGGTTCCTCGACGATCGGTTCACGTTCCACGCAGCACCACGATTCGATCGCAGCAAGCAACGCCTGTCGCTCGGTTTCGGCTTCAATCAGCACGCTCCAAAACTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7234#0 TACATATATATATTAGCAACTTTTACTTAACTAACAAACGCACGCACACTTTCGCTCTAT 60 consensus_7234#1 ------------------------------------------------------------ consensus_7234#0 TTCCTTGGGAATGTCCTTGGCACCATCCACTACTGGCCGCCGGCCGTTCCAGTGCCGCTT 120 consensus_7234#1 ------------------------------------------------------------ consensus_7234#0 TGGTTTCGCGCTTGATCGTTTGCGCAATTATCCGCAGCACGTGCGGATCGGTTATCTGGT 180 consensus_7234#1 ----------------------------------CAGCACGTGCGGATCGGTTATCTGGT 26 ************************** consensus_7234#0 CGCAAAGCTGCTGGTAGCATCCGTTCATGATGTCTTTCACCAGGGAAGCGTCCGTTGCCG 240 consensus_7234#1 CGCAAAGCTGCTGGTAGCATCCGTTCATGATGTCTTTCACCAGGGAAGCGTCCGTTGCCG 86 ************************************************************ consensus_7234#0 CTGGGCGATGCTGTGCCGCCTGCTTCAGTTCATCACATTCTCGCTGCAGCTGCTCCAGCT 300 consensus_7234#1 CTGGGCGATGCTGTGCCGCCTGCTTCAGTTCATCACATTCTCGCTGCAGCTGGTCCAGCT 146 **************************************************** ******* consensus_7234#0 GCTGGCGCCACGATTCCGAACGTTGATGTTCTTGCTCCAACTGTTCTTTGAAACGCGTCC 360 consensus_7234#1 GCTGGCGCCACGATTCCGAACGTTGATGTTCTTGCTCCAACTGTTCTTTGAAACGCGTCC 206 ************************************************************ consensus_7234#0 GGTCATGCCGAGCTTCTGCTAGCTGCTCGCGGGCTGCGTTCATTTCTTTGGTCGCATCTT 420 consensus_7234#1 GGTCATGCCGAGCTTCTGCTAGCTGTTCCCGGGCTGCATTCATTTCTTTGGTTGCATCTT 266 ************************* ** ******** ************** ******* consensus_7234#0 CAGTGGTTAGTTTTTCCTCTGCAAGCTGTTTTTCAAGCGCATCGAGCGTTGCTTTCTGCC 480 consensus_7234#1 CAGTGGTTAGTTTTTCCTCTGCAAGCTGCTTTTCAAGCGCATCGAGCGTTGCTTTCTGCC 326 **************************** ******************************* consensus_7234#0 GTGCCGACTCCGGCATTGCTTGCTTCGAGCTGTAACTCCAAACGGCGGATGGTTTCCTTG 540 consensus_7234#1 GTGCCAACTCCG-CATTGCTTGCTTCGAGCTGTAACTCCAAACTGCGGATGGTTTCCTTG 385 ***** ****** ****************************** **************** consensus_7234#0 TGGTGGCGTTCAAGACTCTTCCAGCGTTTTGATTTGTTGCTCCAGCTTGGCGTTTGTCTC 600 consensus_7234#1 TGGTGGCGTTCAAG-CTCTTCCAGCGTTTTGATTTGTTGCTCCAGCTTGGCGTTTGTCTC 444 ************** ********************************************* consensus_7234#0 TCGCGTTCCGTCTCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATT 660 consensus_7234#1 TCGCGTTCCGTCCCTTTCCGCTGCTTCTAGTGTGCGCACTTTGCTTTTCAGCGCATGATT 504 ************ *********************************************** consensus_7234#0 GGTACGCTTCAGTTCACG-----TTCCACGCAGCACCA-CGATTCGA--TCGCAGCAAGC 712 consensus_7234#1 GGTACGCTTCAGCTCGAGCAGCTTCTCTTCCAGCTCGAGCACTTCGGCTTCCTTGTCGGC 564 ************ ** * * * **** * * * **** ** * ** consensus_7234#0 AACGCCTGTCGCTCGGTTT--CGGCTTCGATCAGCACGCTCCAAAACTCGTTCGAATCAT 770 consensus_7234#1 TACGCTCTGGGGACGCTCCGACGAACCCGA-CGACCCTCCCTGGTGCAGGTTAAGCAAAT 623 **** * ** * ** *** * * * * * * *** ** consensus_7234#0 CCGCCCGGAACTGCAGATAGTTCTGTTTGAGGAAAAGCTTCGTGTCGGAGGACAGTGTCA 830 consensus_7234#1 CGATCCGATCGAGCACACGGTCAAGCTTCGATTCGAGCTTTGTCAGATTCATGCGCATTT 683 * *** *** * ** * ** ***** ** * * consensus_7234#0 CCGTGGCCAGTACATCCGTCTTCGTGCGGTAT--AGCAGCAATCGGTGACCGGCGGAGGA 888 consensus_7234#1 CCGTGTTTTGCACGGG-GTTTTCGCTCATAATCAAGTTGAAATTCACATCCGCCATCGTC 742 ***** * ** ** **** * ** ** * *** *** * * consensus_7234#0 GTTGAGCAACGCAAGTCCCACGCTGCCCAGGTAAACATTGTCACGATCAACGAGCTTGTA 948 consensus_7234#1 GTGCCATTCCCCTGACTTGTGACAGTCCCACCGTGGCCCGCTGGGACCATT---CCTGCC 799 ** * * * * ** * ** ** * ** consensus_7234#0 GGCCGAAACGACCGATGCCCGTACGATGGTCCATTCCGGAGGAGCTTTGGACGACTCTTC 1008 consensus_7234#1 AGCGGAACCATCTGCATACCGACCGCCGA--CGTGTAATTGGGCCGTCGGATCGGTC--G 855 ** *** * * * *** ** * * * ** * * *** ** consensus_7234#0 CGCCGTCTCGTCTTCGGCCGGTTCGGCGGGAACGTATCGGA--AATTGGATGGACCGTAG 1066 consensus_7234#1 CGTCGTAATGGTCTCAATC--TTCGAGTCGGACGTATCGGACGAATCGGA--GCCGGGTG 911 ** *** * ** * **** * ********** *** *** * * * * consensus_7234#0 CGATCG--GAGATTTTGACCGGCTTCGGTGCCGCGGAAACGCTCGCACGCTCGCTACTAC 1124 consensus_7234#1 CGATCGTGGGAATCGGGGGCGGTTTCACCTTCTCCGGCAGGGGCA-----TCGCT--TGC 964 ****** * ** * *** *** * * * * * * ***** * * consensus_7234#0 CTACGCTAGCAGTGCCTTTGGGCGTGAAGCCAAACAGTTTGGCCAGTGTGGAGTTGGCGC 1184 consensus_7234#1 CCAC-CCATCCGTGCCAT---GCGTGCCGC----CAGCTCGGACCGTTTGCTGTTCGGCG 1016 * ** * * * ***** * ***** ** *** * ** * ** ** *** * consensus_7234#0 TGTTGGAGGGCGTTGGTTTGAAGAATTCTTCGTCATCGGATTCATGGTCCCCGCCTCGCC 1244 consensus_7234#1 GGTCGGGCGGATCCCGTTCCA-----CCTCCGACAGTGGTTCCTCGACGATCGGTTCAC- 1070 ** ** ** *** * ** ** ** ** * * * ** ** * consensus_7234#0 CAACGTCACCAAACATTGAGGCAGTGGATAAATCGAGGAAAAATAGAGCGATAGAGCGTT 1304 consensus_7234#1 --GTTCCACGCAGCACCACGAT------TCGATCGCAGCAAGCAACGCCTGTCGCTCGGT 1122 *** * ** * * **** * ** * * * * ** * consensus_7234#0 ATTTAGCGTTATTTGTGGTGCAGTGGAGTAATCGTTTGTTTTGATTGCTTTCTGCCCACG 1364 consensus_7234#1 -TTCGGCTTCAATCA--GCACGCTCCAAAACTCG-------------------------- 1153 ** ** * * * * * * * * *** consensus_7234#0 CGTCCGCGG 1373 consensus_7234#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||