|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1005 fasta sequence
[TGGAAGGATCAAGTGGAGGGCAAGACTGG-GAGTCGTTCTTGGTTCTTTGCAGCCGTTGCAACGTTAGCCTAAAACCATAAGTCTGAAGTAGTTCGAGTAACATCGATTTTCTTCAGCTTATTGGAACCAAAGTAAACAGTGAAGAGTGTGTATCTCACAGCAATTACCAACCCGCGCATTAACAACATCAAGTGCCTGAGAGCTCTTCCGAACGTGTCGTAACAATGGCAGCCTTCGTAGAACCGCATTTCGATGCCTGGACGCAGGGATCCGGCAACATGTCGGTGGTGGACAAGGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTAACGGTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCCTTCTCCGATTTCTTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACCTTTGGCCCGTTCGCGTGCGAGCTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACC-ATGACGATGATTGCCTTCGACCGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTGCCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGGACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGACAGGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGC]
[+] EMBL CNS0933T [TGGAAGGATCAAGTGGAGGGCAAGTCTGGTGAGTCGTTCTTGGTTCTTTGCAGCCGTTGCAACGTTAGCCTAAAACCAT AGTCTGAAGTAGTTCGAGTAACATCGATTTTCTTCAGCTTATTGGAACCAAAGTAAACAGTGAAGAGTGTGTATCTCACAGCAATTACCAACCCGCGCATTAACAACATCAAGTGCCTGAGAGCTCTTCCGAACGTGTCGTAACAATGGCAGCCTTCGTAGAACCGCATTTCGATGCCTGGACGCAGGGATCCGGCAACATGTCGGTGGTGGACAAGGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTAAC GTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCCTTCTCCGATTTCTTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACCTTTGGCCCGTTCGCGTGCGAGCTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACC ATGACGATGATTGCCTTCGACCGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTGCCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGGACCGACTACCTGACCCAGACGTGGCTGAGCC ]
[+] EMBL CNS09GVC [ ACTGG GAGTCGTTCTTGGTTCTTTGCAGCCGTTGCAACGTTAGCCTAAAACCATAAGTCTGAAGTAGTTCGAGTAACATCGATTTTCTTCAGCTTATTGGAACCAAAGTAAACAGTGAAGAGTGTGTATCTCACAGCCATTACCAACCCGCGCATTAACAACATCAAGTGCCTGAGAGCTCTTCCGAACGTGTCGTAACAATGGCAGCCTTCGTAGAACCGCATTTCGATGCCTGGACGCAGGGATCCGGTAACATGTCGGTGGTGGACAAGGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTAACGGTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCCTTCTCCGATTTCTTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACCTTTGGGCCGTTCGCGTGCGAGCTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACC ATGACGATGATTGCCTTTGACCGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTGCCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGAACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTATGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGACAGGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGC]
[+] EMBL CNS08S8V [ ggaaACGGGTGAGTCGTTCTTGGTTCTTTGCAGCCGTTGCAACGTTAGCCTAAAACCATAAGTCTGAAGTAGTTCGAGTAACATCGATTTTCTTCAGCTTATTGGAACCAAAGTAAACAGTGAAGAGTGTGTATCTCACAGCAATTACCAACCCGCGCATTAACAACATCAAGTGCCTGAGAGCTCTTCCGAACGTGTCGTAACAATGGCAGCCTTCGTAGAACCGCATTTCGATGCCTGGACGCAGGGATCCGGCAACATGTCGGTGGTGGACAAGGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTAAC GTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTAAAAAACTCCGATTTCTTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACCTTTGGCCCGTTCGCGTGCGAGCTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACC ATGACGATGATTGCCTTCGACCGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTGCCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGGACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAAGGCTGTGTCCGCTCACGAGAAGAACATGCGCGACA GGCCAAG ]
[+] EMBL CNS0944U [ CTGG GAGTCGTACTTGGTTCTTTGCAGCCGTTGCAACGTTAGCCTAAAACCATAAGTCTGAAGTAGTTCGAGTAACATCGATTTTCTTCAGCTTATTGGAACCAAAGTAAACAGTGAAGAGTGTGTATCTCACAGCAATTACCAACCCGCGCATTAACAACATCAAGTGCCTGAGAGCTCTTCCGAGCGTGTCGTAACAATGGCAGCCTTCGTAGAACCGCATTTCGATGCCTGGACGCAGGGATCCGGCAACATGTCGGTGGTGGACAAGGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTAACGGTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCCTTCTCCGATTTCTTCATGATGTTCACGGTGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACCTTTGGCCCGTTCGCGTGCGAGCTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACC ATGACGATGATTGCCTTCGACCGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTGCCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGCTCGGATGGAACCGATACGTGCCGGA GGCAACATGACCGCCTGCGGGACCGACTACCTGACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCTGCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAAGGCTGTTTTTTCTCACGAGA ]
[+] EMBL CNS092LJ [ CTGG GAGTCGTTCTTGGTTCTTTGCAGCCGTTGCAACGTTAGCCTAAAACCATAAGTCTGAAGTAGTTCGAGTAACATCGATTTTCTTCAGCTTATTGGAACCAAAGTAAACAGTGAAGAGTGTGTATCTCACAGCAATTACCAACCCGCGCATTAACAACATCAAGTGCCTGAGAGCTCTTCCGAACGTGTCGTAACAATGGCAGCCTTCGTAGAACCGCATTTCGATGCCTGGACGCAGGGATCCGGCAACATGTCGGTGGTGGACAAGGTCCCACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGCTGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTAACGGTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTGCTGGTGGTCAATCTGGCCTTCTCCGATTTCTTCATGATGTTCACGATGGGCCCGCCGATGGTGATCAACTGCTGGCACGAGACCTGGACCTTTGGCCCGTTCGCGTGCGAACTGTACGCCATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACCTATGACGATGATTGCCTTCGACCGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGCCGATGACCAACAACGGTGCCCTGCTGCGCATTCTGGGCGTGTGGGTGTTCGCGCTGTTCTGGACTCTGGCCCCGCTGTTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGGACCGACTACCTTACCCAGAAGTGGCTTAACCGCTCGTACATTATCAACTACGCCATCTTCGTATACTGGC ]
consensusID : consensus_7235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 561 fasta sequence
[CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGGCCAAGCTGTCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGGCAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACCGGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCACCCGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCCGCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAACAAGACCCCGTACCAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACCGGTCAGCGTGTCATCGAGATGTAAGGATTTTCTCCTCGCATCTTAATTGACGTGCAAAGGCGCTGGTGCGTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAAGGCAAGCAATAAAATTGCTACTCGTTTTGGCAACGAAACGAC]
[+] EMBL BM593286 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGGCCAAGCTGTCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGGCAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACCGGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCACCCGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCCGCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAACAAGACCCCGTACCAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACCGGTCAGCGTGTCATCGAGATGTAAGGATTTTCTCCTCGCATCTTAATTGACGTGCAAAGGCGCTGGTGCGTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAAGGCAAGCAATAAAATTGCTACTCGTTTTGGCAACGAAACGAC]
[+] EMBL BM614475 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGGGCCAAGCTGTCGGTTGTCCCGGTGCGTCGTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGTACCGTGCAAGGTCAGCGGCAAGTGCGGTTCCGTTCTGGTGCGTCTGATTCCGGCTCCGCGTGGTACCGGCATCGTATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGACGATTGCTATACCACCACCCGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACGTACGCCGCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCGCTGAACAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7235#0 TGGAAGGATCAAGTGGAGGGCAAGACTGGGAGTCGTTCTTGGTTCTTTGCAGCCGTTGCA 60
consensus_7235#1 ------------------------------------------------------------
consensus_7235#0 ACGTTAGCCTAAAACCATAAGTCTGAAGTAGTTCGAGTAACATCGATTTTCTTCAGCTTA 120
consensus_7235#1 ------------------------------------------------------------
consensus_7235#0 TTGGAACCAAAGTAAACAGTGAAGAGTGTGTATCTCACAGCAATTACCAACCCGCGCATT 180
consensus_7235#1 ------------------------------------------------------------
consensus_7235#0 AACAACATCAAGTGCCTGAGAGCTCTTCCGAACGTGTCGTAACAATGGCAGCCTTCGTAG 240
consensus_7235#1 ------------------------------------------------------------
consensus_7235#0 AACCGCATTTCGATGCCTGGACGCAGGGATCCGGCAACATGTCGGTGGTGGACAAGGTCC 300
consensus_7235#1 ------------------------------------------------------------
consensus_7235#0 CACCAGAGATGCTCCACATGGTGCATCCCCACTGGAACCAGTTCCCGCCCATGAACCCGC 360
consensus_7235#1 ------------------------------------------------------------
consensus_7235#0 TGTGGCACTCGATCCTAGGTTTTGCCATCTTCATGCTCGGAATGATCTCGATGACCGGTA 420
consensus_7235#1 -----------------------------------------------CCGCGGACGCGTG 13
** *** **
consensus_7235#0 A-CGGTTGTGTGATGTACATCTTCACCAACACCAAGTCACTCCGAACCCCCTCCAACTTG 479
consensus_7235#1 GGCGGACGCGTGG---GCGGACGCGTGGGGGCCAAGCTG--TCGGTTGTCCCGGTGCGTC 68
*** * *** * * ***** ** ** * *
consensus_7235#0 CTGGTGGTCAATCTGGCCTTCTCCGATTTCTTCATGATGTTCACGATGGGCCCGCCGATG 539
consensus_7235#1 GTGGCTACTGGGGTAACAAGATCGGTCGCCCTCACACCGT-------------ACCGTGC 115
*** * * ** * * *** ** ***
consensus_7235#0 GTGATCAACTGCTGGCACGAGACCTGGACCTTTGGCCCGTTCGCGTGCGAGCTGTACGCC 599
consensus_7235#1 AAGGTCAGCGGCAAGTGCGGTTCCG----TTCTGGTGCGTCTG-ATTCCGGCTCCGCGTG 170
* *** * ** * ** ** * *** *** * * * *** **
consensus_7235#0 ATGCTGGGATCGCTGTTCGGCTGTGCCTCGATCTGGACCATGACGATGATTGCCTTCGAC 659
consensus_7235#1 GTACCGGCATCG-TATCTGCCCCGGTTCCGAAGAAGCTGCTGCAGATGGCTGGTATTGAC 229
* * ** **** * * * * * *** * ** **** ** * ***
consensus_7235#0 CGTTACAACGTCATCGTGAAGGGTCTCGCGGGCAAGC-CGATGACCA-ACAACGGTGCCC 717
consensus_7235#1 GATTGCTATACCACCACCCGTGGTTCCACGACCACGCTCGGTAACTTCGCGAAGGCCACG 289
** * * ** * *** * ** ** ** ** * ** * * ** *
consensus_7235#0 TGCTGCGC-ATTCTGGGCGTGTGGGTGTTC---GCGCTGTTCTGGACTCTGGCCCCGCTG 773
consensus_7235#1 TACGCCGCCATTGCCAAGACGTACGCCTTCCTGACGCCGGACTTGTGGAAGGATCTGCCG 349
* * *** *** ** * *** *** * ** * ** * ** *
consensus_7235#0 TTCGGATGGAACCGATACGTGCCGGAGGGCAACATGACCGCCTGCGGGACCGACTAC-CT 832
consensus_7235#1 CTGAACAAGACCCCGTAC---CAGGAGTTCGCCGACTTCCTCGACAAGACCAACAAGACC 406
* ** ** *** * **** * * * * * **** ** * *
consensus_7235#0 GACCCAGACGTGGCTGAGCCGCTCGTACATCATCATCTACGCCATCTTCGTGTACTGGCT 892
consensus_7235#1 GGTCAGCGTGTCATCGAGATGTAAGGATTTTCTCCTCG----CATCTTAATTGACGTGCA 462
* * ** *** * * * * ** ** ****** * ** **
consensus_7235#0 GCCGCTGCTGACCATCATCTACTCGTACACCTTCATCCTGAA--GGCTGTGTCCGCTCAC 950
consensus_7235#1 AAGGCGCTGGTGCGTCATTTGCTGCTGCTGCTCGATCATTGCCCGACTCTAGGGGAAGGC 522
** * * **** * ** * * ** *** * * ** * * *
consensus_7235#0 GAGAAGAACATGCGCGACAGGGCCAAGAAGATGAACGTCGCCTCGCTGCGTACGC 1005
consensus_7235#1 AAGCAATAAAATTGCTACTCGTTTTGGCAACGAAACGAC---------------- 561
** * * * ** ** * * * **** *
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||