These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1036 fasta sequence [GGTGTCAGAGTAAGACGGTTCAAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGAGGTAAACTCCTTCTAAAGCTAAATACCACCATGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTCTGAATAGAGAGTCAAATAGTACGTGAAACTGCCTAGGGGTACAAACCCGTTGAACTCAATGATCCGGGCGGCGATATTCAGCGGTAAACTAGCATTTGCCGTGCACTTATCGATCCGCAGTAACGGACATCGCGATCCATTACAACAGCGGTTGGCCTCGTGCTAACGCTCCGGCATACACTGCCCCTAGCTCGTGGTGGACGGTCCCTCTGTAAGGGTAGGGTAGCTGCTCTACACTGACCGGGGATCTCCGCGCAGTCCTTCTGGAAGGCGAATGGGTCCGACCGAGCTCTGGTGTGCTGCTGGAAGGGTGATGGATTCTAACGAGAGGGGTAGTACCGCTGTCTTCTCCGAAAGGCGCGCGAATCCTTCGTTCGGCGATGATGCATCATGCATTGAGGCACCTCCGGGACCGTCACTACTGCGGCAAGTGCCACCTGACGCTTGTCTACTCGAAGCAGGAGGAGAAGTAAAAGGTGAAAGTGGCGTGAGCGGAGGATGTACGGCGCGCTTGGCCGTTTCAGTCTTGAACCCCAACCACACCAACCCCCCTCCACACGTGCATGAGGCGTGCGCTCGCTTCTCAGGTTGCTTTTCCACTTCTTCTACCTGGGTTTAGTGTAATCGATGCGGCAGCGTGTTGTCCTCTACACGGTCCACACAAATTGGAAGGGAAAACAATAAAGATGATACGGCTATCGTGCCTGT] [+] EMBL CNS09E69 [GGTGTCAGAGTAAGACGGTTCAAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGTGTTGCTTGATAGTGCAGCACTAAGTGGGAGGTAAACTCCTTCTAAAGCTAAATACCACCATGAGTCCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGCACTCTGAATAGAGAGTCAAATAGTACGTGAAACTGCCTAGGGGTACAAACCCGTTGAACTCAATGATCCGGGCGGCGATATTCAGCGGTAAACTAGCATTTGCCGTGCACTTATCGATCCGCAGTAACGGACATCGCGATCCATTACAACAGCGGTTGGCCTCGTGCTAACGCTCCGGCATACACTGCCCCTAGCTCGTGGTGGACGGTCCCTCTGTAAGGGTAGGGTAGCTGCTCTACACTGACCGGGGATCTCCGCGCAGTCCTTCTGGAAGGCGAATGGGTCCGACCGAGCTCTGGTGTGCTGCTGGAAGGGTGATGGATTCTAACGAGAGGGGTAGTACCGCTGTCTTCTCCGAAAGGCGCGCGAATCCTTCGTTCGGCGATGATGCATCATGCATTGAGGCACCTCCGGGACCGTCACTACTGCGGCAAGTGCCACCT ] [-] EMBL CNS09E6A [ TAGTACGTGAAACTGCCTAGGGGTACAAACCCGTTGAACTCAATGATCCGGGCGGCGATATTCAGCGGTAAACTAGCATTTGCCGTGCACTTATCGATCCGCAGTAACGGACATCGCGATCCATTACAACAGCGGTTGGCCTCGTG TAACGCTCCGGCATACACTGCCCCTAGCTCGTGGTGGACGGTCCCTCTGTAAGGGTAGGGTAGCTGCTCTACACTGACCGGGGATCTCCGCGCAGTCCTTCTGGAAGGCGAATGGGTCCGACCGAGCTCTGGTGTGCTGCTGGAAGGGTGATGGATTCTAACGAGAGGGGTAGTACCGCTGTCTTCTCCGAAAGGCGCGCGAATCCTTCGTTCGGCGATGATGCATCATGCATTGAGGCACCTCCGGGACCGTCACTACTGCGGCAAGTGCCACCTGACGCTTGTCTACTCGAAGCAGGAGGAGAAGTAAAAGGTGAAAGTGGCGTGAGCGGAGGATGTACGGCGCGCTTGGCCGTTTCAGTCTTGAACCCCAACCACACCAACCCCCCTCCACACGTGCATGAGGCGTGCGCTCGCTTCTCAGGTTGCTTTTCCACTTCTTCTACCTGGGTTTAGTGTAATCGATGCGGCAGCGTGTTGTCCTCTACACGGTCCACACAAATTGGAAGGGAAAACAATAAAGATGATACGGCTATCGTGCCTGT] [-] EMBL CNS098M1 [ TGTTGTGCTGCTGGAAGGGTGATGGATTCTAACGAGAGGGGTAGTACCGCTGTCTTCTCCGAAAGGCGCGCAAATCCTTCGTTCGGCGATGATGCATCATGCATTGAGGCACCTCCGGGACCGTCACTACTGCGGCAAGTGCCACCTGACGCTTGTCTACTCGAAGCAGGAGGAGAAGTAAAAGGTGAAAGTGGCGTGAGCGGAGGATGTACGGCGCGCTTGGCCGTTTCAGTCTTGAACCCCAACCACACCAACCCCCCTCCAAACGTGCATGAGGCGTGCGCTCGCTTCTCAGGTTGCTTTTCCACTTCTTCTACCTGGGTTTAGTGTAATCGATGCGGCAGCGTGTTGTCCTCTACACGTTCCACAAAAATTGGAAGGGAAAACAATAAAGATGA ] consensusID : consensus_7246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [CACGAGCAAGCAGGTTAATCGACACTCAAAAACAATCGCGAGGCTGCTTCGCCGTGTGTGTAAACGCGTTTCTTGTAGGCAGGATAAGTGCAGTGTTATTGTTCAGCACAATTCGAGCAATTACAGCGTGTAGTTTGTAAACGTTGATCTCATTAACGCGAAGAGTTTTAATTAAAAGAAGTGAAAATGCCACGCCAAGATGGAGCAGAGGCAGGAGCGCCGAAGATAATTCAGGCTACATTGCGCTAGGTGGCGTGGCCGTCGTTATTCTGTACCTTGCCTTCGGCTATGGAGCTCAGATCCTCTGCAACGTGATTGGAGTGGCGTATCCCGCTTACATCTCGATGAAAGCCATCGAAACCCGCACGAAAGAGGATGACACTAAATGGTTAACGTACTGGGTAACGTTTGGCGTGCTGTCGGTGTTTGAGCACTTCTCCTTCTTCCTGGTTCAGATCATCCCGTTCTACTGGTTGCTGAAGTGCTTATTCCACATATGGTGTATGGTACCGATGGAAAACAATGGTTCCACGATCATGTACCACAA] [+] EMBL CNS094X3 [CACGAGCAAGCAGGTTAATCGACACTCAAAAACAATCGCGAGGCTGCTTCGCCGTGTGTGTAAACGCGTTTCTTGTAGGCAGGATAAGTGCAGTGTTATTGTTCAGCACAATTCGAGCAATTACAGCGTGTAGTTTGTAAACGTTGATCTCATTAACGCGAAGAGTTTTAATTAAAAGAAGTGAAAATGCCACGCCAAGATGGAGCAGAGGCAGGAGCGCCGAAGATAATTCAGGCTACATTGCGCTAGGTGGCGTGGCCGTCGTTATTCTGTACCTTGCCTTCGGCTATGGAGCTCAGATCCTCTGCAACGTGATTGGAGTGGCGTATCCCGCTTACATCTCGATGAAAGCCATCGAAACCCGCACGAAAGAGGATGACACTAAATGGTTAACGTACTGGGTAACGTTTGGCGTGCTGTCGGTGTTTGAGCACTTCTCCTTCTTCCTGGTTCAGATCATCCCGTTCTACTGGTTGCTGAAGTGCTTATTCCACATATGGTGTATGGTACCGATGGAAAACAATGGTTCCACGATCATGTACCACAA] consensusID : consensus_7246#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 512 fasta sequence [CCGCGGACGCGTGGGTTTGAGTGCAGATCTACTACTACTACACACATACACAGTAGCGCTGTAGAAAGTGTGAATTTGTGCGGGAGCGGGTGTTTGCAGTGGTTGCTGATGATCGAACATGAAACGGACCTTTCGATGTTTTGTATCACAAAAAAAAATGCACCGCAAAACGTGGTGCGGCCAGTGCAGATGCTGCTCGCGCAGCTTAGTCAAACAGGATAATTAGTTGAAAACACGAACAAAAAGCACAGAATTCACCTGGTTGCTGTGTTTTTATCCTTTTTTTTATTTCATCCCAAATTTTTATTTATAATTGTTAGTTTAAAATACACACAAAAAACATGCATACAAAAGAGCCTAGATTTGTTGTAAACGGTATATAGTTAATGCATGTGACAGAACGTTCGGCAGATACCACTATTAATAGCAAACATACCATGCTACGGACATATTGAACGTATCGTATAATGTTACAAATAAAGTTTAAATCCAAACAAAAAAGACAAAATGGC] [+] EMBL BM619709 [CCGCGGACGCGTGGGTTTGAGTGCAGATCTACTACTACTACACACATACACAGTAGCGCTGTAGAAAGTGTGAATTTGTGCGGGAGCGGGTGTTTGCAGTGGTTGCTGATGATCGAACATGAAACGGACCTTTCGATGTTTTGTATCACAAAAAAAAATGCACCGCAAAACGTGGTGCGGCCAGTGCAGATGCTGCTCGCGCAGCTTAGTCAAACAGGATAATTAGTTGAAAACACGAACAAAAAGCACAGAATTCACCTGGTTGCTGTGTTTTTATCCTTTTTTTTATTTCATCCCAAATTTTTATTTATAATTGTTAGTTTAAAATACACACAAAAAACATGCATACAAAAGAGCCTAGATTTGTTGTAAACGGTATATAGTTAATGCATGTGACAGAACGTTCGGCAGATACCACTATTAATAGCAAACATACCATGCTACGGACATATTGAACGTA ] [+] EMBL BM646269 [ ccGCAGATCTACTACTACTACACACATACACAGTAGCGCTGTAGAAAGTGTGAATTTGTGCGGGAGCGGGTGTTTGCAGTGGTTGCTGATGATCGAACATGAAACGGACCTTTCGATGTTTTGTATCACAAAAAAAAATGCACCGCAAAACGTGGTGCGGCCAGTGCAGATGCTGCTCGCGCAGCTTAGTCAAACAGGATAATTAGTTGAAAACACGAACAAAAAGCACAGAATTCACCTGGTTGCTGTGTTTTTATCCTTTTTTTTATTTCATCCCAAATTTTTATTTATAATTGTTAGTTTAAAATACACACAAAAAACATGCATACAAAAGAGCCTAGATTTGTTGTAAACGGTATATAGTTAATGCATGTGACAGAACGTTCGGCAGATACCACTATTAATAGCAAACATACCATGCTACGGACATATTGAACGTATCGTATAATGTTACAAATAAAGTTTAAATCCAAACAAAAAAGACAAAATGGC] [+] EMBL BM653208 [ ccgGTTTAAAATACACACAAAAAACATGCATACAAAAGAGCCTAGATTTGTTGTAAACGGTATATAGTTAATGCATGTGACAGAACGTTCGGCAGATACCACTATTAATAGCAAACATACCATGCTACGGACATATTGAACGTATCGTATAATGTTACAAATAAAGTTTAAATCCAAACAAAAAAGACAAAATGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7246#0 GGTGTCAGAGTAAGACGGTTCAAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACC 60 consensus_7246#2 ------------------------------------------------------------ consensus_7246#1 ------------------------------------------------------------ consensus_7246#0 ATTACCCTTGAGGTCGAGCCCTCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGAC 120 consensus_7246#2 ------------------------------------------------------------ consensus_7246#1 ------------------------------------------------------------ consensus_7246#0 AAGGAGGGAATCCCGCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGAT 180 consensus_7246#2 -----------------------------------------CCGCGGAC-GCGTGGGTTT 18 consensus_7246#1 ------------------------------------------CACGAGC--AAGCAGGTT 16 * * * * consensus_7246#0 GGCCGCACGCTGTCCGACTACAACATCCAGAAGGAGTCGTGTTGCTTGATAGTGCAGCAC 240 consensus_7246#2 GAGTGCA-GATCTACTACTACTACACACATACACAGTAGCGCTG-TAGAAAGTGTGAATT 76 consensus_7246#1 AATCG-ACACTCAAAAACAATCGCGAGGCTGCTTCGCCGTGTGTGTAAACGCGTTTCTTG 75 * * * ** * * * * * * * consensus_7246#0 TAAGTGGGAG--GTAAACTCCTTCTAAA-GCTAAATACC-ACCA--TGAGTCCGATAGCG 294 consensus_7246#2 TGTGCGGGAGCGGGTGTTTGCAGTGGTT-GCTGATGATCGAACA--TGAAACGGACCTTT 133 consensus_7246#1 TAGGCAGGATAAGTGCAGTGTTATTGTTCAGCACAATTCGAGCAATTACAGCGTGTAGTT 135 * * *** * * * * ** * * consensus_7246#0 AACAAGTACCG-TGAGGGAAAGTTGAAAAGCACTC-TGAATAGAGAGTCAAATAGTACGT 352 consensus_7246#2 CG-ATGTTTTG-TATCACAAAAA-AAAATGCACCG-CAAAACGTGGTGCGGCCAGTGCA- 188 consensus_7246#1 TGTAAACGTTGATCTCATTAACGCGAAGAGTTTTAATTAAAAGAAGTGAAAATGCCACGC 195 * * * ** ** * ** * * consensus_7246#0 GAAACTGCCTAGGGGTACAAACCCGTTGAACTCAATGATCCGGGCGGCGA-TATTCAGCG 411 consensus_7246#2 GATGCTGCTCGCGCAGCTTAGTCAAACAGGATAATTAGTTGAAAACACGAACAAAAAGCA 248 consensus_7246#1 CAAGATGGA-GCAGAGGCAGGAGCGCCGAA---GATAATTCAGGCTACAT-TGCGCTAGG 250 * ** * * * consensus_7246#0 GTAAACTAGCAT--TTGCCGTGCACTTATCGATCCGCAGT--AACGGACATCGCGATCCA 467 consensus_7246#2 CAGAATTCACCTGGTTGCTGTGTTTTTATCCTTTTTTT-T--ATTT--CATCCCAAATTT 303 consensus_7246#1 TGGCGTGGCCGTCGTTATTCTGTACCTTGCCTTCGGCTATGGAGCTCAGATCCTCTGCAA 310 * * ** ** * * * * * *** consensus_7246#0 T-TACA-ACAGCGGTTGGCCTCGTGCTAACGCT-----CCGGCATACACT-GCCCCTAG- 518 consensus_7246#2 T-TATTTATAATTGTTAGTTTAAAATACACACAAAAAACATGCATACAAAAGAGCCTAGA 362 consensus_7246#1 CGTGATTGGAGTGGCGTATCCCGCTTACATCTCGATGAAAGCCATCGAAA--CCCGCACG 368 * * * * *** * * * consensus_7246#0 CTCGTGGTGGACGGTCCCTCTGTAAGG-GTAGGGTAGC-TGCTCTACACTGACCGGGGAT 576 consensus_7246#2 TTTGTTGTAAACGGTATATAGTTAATGCATGTGACAGAACGTTCGGCAGATACCACTATT 422 consensus_7246#1 AAAGAGGATGACACTAAATGGTTAACGTACTGGGTAAC--GTTTGGCG--TGCTGTCGGT 424 * * ** * * *** * * * * * * * * consensus_7246#0 CTCCGCGCAGTCCTTCTGGAAGGCGAATGGGTCCGACCGAGCTCTGGTGTGCTGCTGGAA 636 consensus_7246#2 AATAGC--AAACATACCATGCTACGGACATATT-GAACGTATCGTATAATGTTACAAATA 479 consensus_7246#1 GTTTGAGCACTTCTCCTTCTTCCTGGTTCAGAT-CATCCCGTTCTACTG-GTTGCTG--- 479 * * * * * * * * * * * consensus_7246#0 GGGTGATGGATTCTAACGAGAGGGGTAGTACCGCTGTCTTCTCCGAAAGGCGCGCGAATC 696 consensus_7246#2 AAGTT-TAAATCCAAACAAAAAAGACAAAATGGC-------------------------- 512 consensus_7246#1 AAGTGCTTATTCCACATATGGTGTATGGTACCGATGGAAAACAATGGTTCCACGATCATG 539 ** * * * * * * consensus_7246#0 CTTCGTTCGGCGATGATGCATCATGCATTGAGGCACCTCCGGGACCGTCACTACTGCGGC 756 consensus_7246#2 ------------------------------------------------------------ consensus_7246#1 TACCACAA---------------------------------------------------- 547 consensus_7246#0 AAGTGCCACCTGACGCTTGTCTACTCGAAGCAGGAGGAGAAGTAAAAGGTGAAAGTGGCG 816 consensus_7246#2 ------------------------------------------------------------ consensus_7246#1 ------------------------------------------------------------ consensus_7246#0 TGAGCGGAGGATGTACGGCGCGCTTGGCCGTTTCAGTCTTGAACCCCAACCACACCAACC 876 consensus_7246#2 ------------------------------------------------------------ consensus_7246#1 ------------------------------------------------------------ consensus_7246#0 CCCCTCCACACGTGCATGAGGCGTGCGCTCGCTTCTCAGGTTGCTTTTCCACTTCTTCTA 936 consensus_7246#2 ------------------------------------------------------------ consensus_7246#1 ------------------------------------------------------------ consensus_7246#0 CCTGGGTTTAGTGTAATCGATGCGGCAGCGTGTTGTCCTCTACACGGTCCACACAAATTG 996 consensus_7246#2 ------------------------------------------------------------ consensus_7246#1 ------------------------------------------------------------ consensus_7246#0 GAAGGGAAAACAATAAAGATGATACGGCTATCGTGCCTGT 1036 consensus_7246#2 ---------------------------------------- consensus_7246#1 ---------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||