These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 907 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTACAGAACTACCTAAACGGAATCGGCTAATGCCGTGGAAAAAAAGCCAGCATCAGCAAAAATAGTAAGCAAAGCGGTGGTAGGCGCATTATTCTGCCAGCTGGCATGGGATGCTCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGAACTATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAG--AAAGAAAGCCAGGTATCTATCACGTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAAGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGA--GTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATGCGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAATTTGATTGGTTTTAAATCCCTTTTATTTGTTACAAAAGATCATCATGCAAGAGTTTCTCTTTAA-GATATCCTTTTTTGTTTTGTAAAAGTATGACTAAGCACACAGACTCTTAGAACCCAATAGACGCGATACTAAT-AAACCCAATAAATAGTGTGATTTTGTTTTAAAGCGAATTTTCTCAAAACAGTTAGTAACTTAGCTTTTTATATACTCAACTGACTTGTAAATGCTTTGAGTTTTTTTTCTGACGCCTTCGAGAGACAATTATGTATTTCCCCTTTATCTTTCGNTATCTTCCACTGAAATATATT] [+] EMBL BM591041 [CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTACAGAACTACCTAAACGGAATCGGCTAATGCCGTGGAAAAAAAGCCAGCATCAGCAAAAATAGTAAGCAAAGCGGTGGTAGGCGCATTATTCTGCCAGCTGGCATGGGATGCTCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTAAACTATCGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAG AAAGAAAGCCAGGTATCTATCACGTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAAGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCCACAAGTGGACAGCAGGA GTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATGCGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAATTTGATTGGTTTTAAATCCCTTTTATTTGTTACAAAAGATCATCATGCAAGAGTTTCTCTTTAAGGAT TCCTTTTTTGTTTTGTAAAA ] [+] EMBL BX608517 [ CTAATGCCGTGG AAAAAAGCCAGCATCAACAAAAATAGTAAGCAAAGCGATAGTAGGCACATTATTCTGCCAGCTGGCATGGGATGCTCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGAAATATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATAAACAGGTAAAGAAAGCCAGGTATCTATCACGTTTAATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAAGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGA GTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATGCGCAGAACATTGGAAAACTGCAAGACACAAACGCAAAAACAGGATTGAATTTGTAATAATTTGATTGGTTTTAAATCCCTTTTATTTGTTACAAAAGATCATCATGCAAGAGTTTCTCTTTAA GATATCCTTTTTTGTTTTGTAAAAGTATGACTAAGCACACAGACTCTTAGAACCCAATAGACGCGATACTAAT AAACCCAATAAATAGTGTGATTTTGTTTTAAAGCGAATTTTCTCAAAACAGTTAGTAACTTAGCTTTTTATATACTCAACTGACTTGTAAATGCTTTGAGTTTTTTTTCTGACGCCTTCGAGAGACAATTA ] [+] EMBL BX621723 [ CCAGCTGGCATGGGATGCTCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTAAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGCACTATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAG AAAGAAAGCCAGATATCTATCACGTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAGGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGAGTGTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATGCGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAATTTGATTGGTTTTAAATCCCTTTTATTTGTTACAAAAGATCATCATGCAAGAGTTTCTCTTTAA GGTTTCCTTTTTTGTTTTGTAAAAGTATGACTAAGCACACAGACTCTTAGAACCCAATAGA CGATACTAATAAAACCCATTGAATAGTGTGATTTTGTTTTAAAGCGAATTTTCTCAAAACAGTTAGTAACTTAGCTTTTTATATACTCAACTGACTTGTAAATGCTTTGAG TTTTTTTCTGACGCCTTCGAGAGACAATTATGTATTTCCCCTTTATCTTTCGNTATCTTCCACTGAAATATATT] consensusID : consensus_7261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 646 fasta sequence [ACCGACCGACAGCGATCGATCATTTACAAGATGTGTACAGAACTACCTAAACAGAATCGGCTAATGCCGTGGAAAAAAAGCCAGCATCAGCAAAAATAGTAAGCAAAGCGGTGGTAGGCGCATTATTCTGCCAGCTGGCATGGGATCCGCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTAAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGCACTATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAGAAAGAAAGCCAGATATCTATCACGTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAGGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGAGTGTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATGCGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAATTTGATTGGTTTTAAATCCCTTTTATTTGTTACNAAAGATCATCATGCAAGAGTTTCTCTTTAAG] [+] EMBL BX626974 [ACCGACCGACAGCGATCGATCATTTACAAGATGTGTACAGAACTACCTAAACAGAATCGGCTAATGCCGTGGAAAAAAAGCCAGCATCAGCAAAAATAGTAAGCAAAGCGGTGGTAGGCGCATTATTCTGCCAGCTGGCATGGGATGCTCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTAAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGCACTATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAGAAAGAAAGCCAGATATCTATCACGTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAGGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGAGTGTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATGCGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAATTTGATTGGTTTTAAATCCCTTTTATTTGTTACNAAAGATCATCATGCAAGAGTTTCTCTTTAAG] [+] EMBL BM594302 [ CCGCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTAAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGCACTATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAGAAAGAAAGCCAGATATCTATCACGTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGACGACAGGCTCGATAGGTTTAAATAATCTAGCA ] [+] EMBL BM592534 [ CCGCGTTTTAGCATATTAGTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTAAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGCACTATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATACACAGAAAGAAAGCCAGA ] consensusID : consensus_7261#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [CCGCCCACGCGTCCGATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGAAATATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATAAACAGGTAAAGAAAGCCAGGTATCTATCACGTTTAATGAACAGAAGTTTTGTTTTAAGTCTAAATGTATTCCACATACACACAGGGCGACGACAAGCTCGATAGGTTTAAATAATCTAGCAAGGAGTGCCCGACAAGTGGACAGCAGGAGTTCGATATGCGT] [+] EMBL BM624884 [CCGCCCACGCGTCCGATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGCAGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGAAATATTGCGCAGAATTATTAATGACATAGTGGGAACAGACAGAAAGAGATAAACAGGTAAAGAAAGCCAGGTATCTATCACGTTTAATGAACAGAAGTTTTGTTTTAAGTCTAAATGTATTCCACATACACACAGGGCGACGACAAGCTCGATAGGTTTAAATAATCTAGCAAGGAGTGCCCGACAAGTGGACAGCAGGAGTTCGATATGCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7261#0 CCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGTACAGAACT 60 consensus_7261#2 ------------------------------------------------------------ consensus_7261#1 ----------------ACCGACCGACAGCGATCGATCATTTACAAGATGTGTACAGAACT 44 consensus_7261#0 ACCTAAACGGAATCGGCTAATGCCGTGGAAAAAAAGCCAGCATCAGCAAAAATAGTAAGC 120 consensus_7261#2 ------------------------------------------------------------ consensus_7261#1 ACCTAAACAGAATCGGCTAATGCCGTGGAAAAAAAGCCAGCATCAGCAAAAATAGTAAGC 104 consensus_7261#0 AAAGCGGTGGTAGGCGCATTATTCTGCCAGCTGGCATGGGATGCTCGTTTTAGCATATTA 180 consensus_7261#2 ------------------------------------------------------------ consensus_7261#1 AAAGCGGTGGTAGGCGCATTATTCTGCCAGCTGGCATGGGATCCGCGTTTTAGCATATTA 164 consensus_7261#0 GTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGC 240 consensus_7261#2 -CCGCCCACGCGTCCGA-TCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTCAAGC 58 consensus_7261#1 GTAGTTTAAAAACAAGAATCATAACAGCCGAGTAGTAGCAGTCTCTTATCAGTTTAAAGC 224 * * ** ************************************* **** consensus_7261#0 AGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGAACTATTGCGCAGAATTATTAA 300 consensus_7261#2 AGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGAAATATTGCGCAGAATTATTAA 118 consensus_7261#1 AGATAGTGTGAGCAATTAGTACGTAAGCACAGTTCGTGCACTATTGCGCAGAATTATTAA 284 ************************************** * ******************* consensus_7261#0 TGACATAGTGGGAACAGACAGAAAGAGATACACAG--AAAGAAAGCCAGGTATCTATCAC 358 consensus_7261#2 TGACATAGTGGGAACAGACAGAAAGAGATAAACAGGTAAAGAAAGCCAGGTATCTATCAC 178 consensus_7261#1 TGACATAGTGGGAACAGACAGAAAGAGATACACAG--AAAGAAAGCCAGATATCTATCAC 342 ****************************** **** ************ ********** consensus_7261#0 GTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGAC 418 consensus_7261#2 GTTTAATGAACAGAAGTTTTGTTTTAAGTCTAAATGTATTCCACATACACACAGGGCGAC 238 consensus_7261#1 GTTTGATGAACAGAAGTTTTGTTTTAAGTTTAAATGTATTCCACATACACACAGGGCGAC 402 **** ************************ ****************************** consensus_7261#0 GACAAGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGA 478 consensus_7261#2 GACAAGCTCGATAGGTTTAAATAATCTAGCAA-GGAGTGCCCGACAAGTGGACAGCAGGA 297 consensus_7261#1 GACAGGCTCGATAGGTTTAAATAATCTAGCAAAGGAGTGCCCGACAAGTGGACAGCAGGA 462 **** *************************** *************************** consensus_7261#0 GT--TCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATG 536 consensus_7261#2 GT--TCGATATGCGT--------------------------------------------- 310 consensus_7261#1 GTGTTCGATATGCGTCTTCATGCAAAAGCGACTAAAATTAGGAAGTTAGCTCAGAGCATG 522 ** *********** consensus_7261#0 CGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAAT 596 consensus_7261#2 ------------------------------------------------------------ consensus_7261#1 CGCAGAACATTGGAAAACTGCAAGACACAAACGCAAACACAGGATTGAATTTGTAATAAT 582 consensus_7261#0 TTGATTGGTTTTAAATCCCTTTTATTTGTTACAAAAGATCATCATGCAAGAGTTTCTCTT 656 consensus_7261#2 ------------------------------------------------------------ consensus_7261#1 TTGATTGGTTTTAAATCCCTTTTATTTGTTACNAAAGATCATCATGCAAGAGTTTCTCTT 642 consensus_7261#0 TAAGATATCCTTTTTTGTTTTGTAAAAGTATGACTAAGCACACAGACTCTTAGAACCCAA 716 consensus_7261#2 ------------------------------------------------------------ consensus_7261#1 TAAG-------------------------------------------------------- 646 consensus_7261#0 TAGACGCGATACTAATAAACCCAATAAATAGTGTGATTTTGTTTTAAAGCGAATTTTCTC 776 consensus_7261#2 ------------------------------------------------------------ consensus_7261#1 ------------------------------------------------------------ consensus_7261#0 AAAACAGTTAGTAACTTAGCTTTTTATATACTCAACTGACTTGTAAATGCTTTGAGTTTT 836 consensus_7261#2 ------------------------------------------------------------ consensus_7261#1 ------------------------------------------------------------ consensus_7261#0 TTTTCTGACGCCTTCGAGAGACAATTATGTATTTCCCCTTTATCTTTCGNTATCTTCCAC 896 consensus_7261#2 ------------------------------------------------------------ consensus_7261#1 ------------------------------------------------------------ consensus_7261#0 TGAAATATATT 907 consensus_7261#2 ----------- consensus_7261#1 ----------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||