These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7292#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1385 fasta sequence [CCGCCCAGCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGGATTTTAAGGATATAATAGCAAACGTATAAACAAAAAAAAATATGAAAGATATGTAAAAAAGAAAGAAAGCAACACGGATAATGACAATACAACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAGGAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAAAACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTCTGGATGGTGGAGAGCGAGGTGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAATTTTCCCTAGTCCCAAACAAAAACCTCCTTATCACCTCT-AAAAAAACATTCCTTTCTCTATCTATCTC--------TCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATGTAACTGTGTGCGTGGTGTTGAGTAAAAATTAACGAACCTTACAAAACAGCAAACAAACAAACAAACAAACTCCTTATTGAGAAGATACTTATATATATATCGGATCGGTTCTATACAAAAGGTGTGAAAAGATTATGATGCATTATAAGCAGTCAGTGACGTGTTTAGGGAAAGCAAAAGGGTCGCCGGTGCGTACGTGGAGGGTAAAGAAATAGTTTTTAATTTACGGAACAGATTTCATCAACAAAGATTAAGTGACGGGGGCAGAGGAATGAGTATGCAATGGTTTAGTTCTCCCACTACTGTGGTTAGCGAATTATAATCTCTCTCCCTGTAATGCCTATCACATTTACCACTTTGAATCTCGAATTTCGGTTTTAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATCCAACGTCTTTTTAGTTGTGTTTGTGATTGTGACTGGTGTTGTCGTATTGTGTTGTGTTGGTTTACTTATTTAAGACCTGTTTAAGAAACAATTGAACGAGAAGTGTGTGTGTGCGTGTTTGAGAGAGTGTTGTGTGATTAGCTAATCGGGAAGGATCTAGTTAGAGCGAACGTCCTTGTTTTTACGTTGTTTTTTTATCTTCTCCACGTTACTTACGTTCCGGCTCGTCTCACTTACGGCAAGTGTTTAACAGAATCGGCTAGACTAACTTCTTGCAATCATGATAACCTAAGAAATACTACATACAACAATATCGTTCTACACTGGACAGGGTTAAATAAGGGGTGGGGGAGAGTGGTGCGATAGTACCAAAGGATAAAGTGAGTGAGTGATGCAAAGAAGTGGAAAAGGAGCAAAAGTGAAGGAAATACAACAAAACACACAAACGTACATAT] [+] EMBL BM655858 [CCGCCCAGCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGGATTTTAAGGATATAATAGCAAACGTATAAACAAAAAAAAATATGAAAGATATGTAAAAAAGAAAGAAAGCAACAGAGATAATGACAATACAACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAGGAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAAAACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTGTGGATGGTGGAGAGCGAGATGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAATTTTCCCTAGTTCCAAACAAAAACCTCCTTATCACCTCTAAAAAAAACATTCCTTTCTCTATCTATCTCTCTCTCTGTCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATGTAACTGTGTGCGTGGTGTTGAGTAAAAATTAACGAACCTTACAAAACAGCAAACAAACAAACAAACAAA ] [+] EMBL BM642080 [ cCGGATAATGACAATACAACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAGGAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAAAACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTCTGGATGGTGGAGAGCGAGGTGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAATTTTCCCTAGTCCCAAACAAAAACCTCCTTATCACCTCT AAAAAAACATTCCTTTCTCTATCTATCTC TCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATGTAACCGTGTGCGTGGTGTTGAGTAAAAATTAACGAACCTTACAAAACAGCAAACAAACAAACAAACAAACTCCTTATTGAGAAGATACTTATATATATATCGGATCGGTTCTATACAAAAGGTGTGAAAAGATTATGATGCATTATAAGCAGTCAGTGACGTGTTTAGGGAAAGCAAAAGGGTCGCCGGTGCGTACGTGGAGGGTAAAGAAATAGTTTTTAATTTACGGAACAGATTTCATCAACAAAGATTAAGTGACGGGGGCAGAGGAATGAGTATGCAATGGTTTAG ] [+] EMBL BM651912 [ ccGACAATACAACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAGGAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAAAACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTCTGGATGGTGGAGAGCGAGGTGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAATTTTCCCTAGTCCCAAACAAAAACCTCCTTATCACCTCT AAAAAAACATTCCTTTCTCTATCTATCTC TCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATGTAACTGTGTGCGTGGTGTTGAGTAAAAATTAACGAACCTTACAAAACAGCAAACAAACAAACAAACAAACTCCTTATTGAGAAGATACTTATATATATATCGGATCGGTTCTATACAAAAGGTGTGAAAAGATTATGATGCATTATAAGCAGTCAGTGACGTGTTTAGGGAAAGCAAAAGGGTCGCCGGT ] [+] EMBL BM654038 [ cgcgtccgGACAATACAACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAGGAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAAAACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTCTGGATGGTGGAGAGCGAGGTGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAATTTTCCCTAGTCCCAAACAAAAACCTCCTTATCACCTCT AAAAAAACATTCCTTTCTCTATCTATCTC TCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATG ] [+] EMBL BM653756 [ ccgCAACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAGGAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAAAACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTCTGGATGGTGGAGAGCGAGGTGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAATTTTCCCTAGTCCCAAACAAAAACCTCCTTATCACCTCT AAAAAAACATTCCTTTCTCTATCTATCTC TCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATGTAACTGTGTGCGTGGTGTTGAGTAAAAATTAACGAACCTTACAAAACAGCAAACAAACAAACAAACAAACTCCTTATTGAGAAGATACTTATATATATATCGGATCGGTTCTATACAAAAGGTGTGAAAAGATTATGATGCATTATAAGCAGTCAGTGACGTGTTTAGGGAAAGCAAAAGGGTCGCCGGT ] [+] EMBL BM598057 [ ccgCAAAGATTAAGTGAC GGGGCAGAGGAATGAGTATGCAATGGTTTAGTTCTCCCACTACTGTGGTTAGCGAATTATAATCTCTCTCCCTGTAATGCCTATCACATTTACCACTTTGAATCTCGAATTTCGGTTTTAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACACATCCAACGTCTTTTTAGTTGTGTTTGTGATTGTGACTGGTGTTGTCGTATTGTGTTGTGTTGGTTTACTTATTTAAGACCTGTTTAAGAAACAATTGAACGAGAAGTGTGTGTGTGCGTGTTTGAGAGAGTGTTGTGTGATTAGCTAATCGGGAAGGATCTAGTTAGAGCGAACGTCCTTGTTTTTACGTTGTTTTTTTATCTTCTCCACGTTACTTACGTTCCGGCTCGTCTCACTTACGGCAAGTGTTTAACAGAATCGGCTAGACTAACTTCTTGCAATCATGATAACCTAAGAAATACTACATACAACAATATCGTTCTACACTGGACAGGGTTAAATAAGGGGTGGGGGAGAGTGGTGCGATAGTACCAAAGGATAAAGTGAGTGAGTGATGCAAAGAAGTGGAAAAGGAGCAAAAGTGAAGGAAATACAACAAAACACACAAACGTACATAT] consensusID : consensus_7292#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 160 fasta sequence [GACCCACGCGTCCGCCCACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGTATTTATAATCAGTAATGTGGAATTATTTAACTTTTATTTCCTATACATATGAATATATATATATTTTAGCAATAAACACTGAAAACGGAAGAAAACTGACAAAACTG] [+] EMBL BM580985 [GACCCACGCGTCCGCCCACGCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGTATTTATAATCAGTAATGTGGAATTATTTAACTTTTATTTCCTATACATATGAATATATATATATTTTAGCAATAAACACTGAAAACGGAAGAAAACTGACAAAACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7292#0 CCGCCCA-GCGTCCGCGGACGCGTGGGCGGACGCGTGGGTGGATTTTAAGGATATAATAG 59 consensus_7292#1 -GACCCACGCGTCCGCCCACGCGTCCGCGGACGCGTGGGCGGACGC-GTGGGTGTATTTA 58 **** ******** ****** ************* *** ** * ** * consensus_7292#0 CAAACGTATAAACAAAAAAAAATATGAAAGATATGTAAAAAAGAAAGAAAGCAACACGGA 119 consensus_7292#1 TAATC--AGTAATGTGGAATTATTTAACTTTTATTTCCTATACATATGAATATATATATA 116 ** * * ** ** ** * * *** * * * * * ** * * * consensus_7292#0 TAATGACAATACA-ACCGAAAACGTGATGCAACATTAAACAAAACAACAACAACAACAAG 178 consensus_7292#1 TTTTAGCAATAAACACTGAAAACGGAAGAAAACT---GACAAAACTG------------- 160 * * ***** * ** ******* * *** ******* consensus_7292#0 GAGAAGAAGAAACAAAAAAGCATAAGAGTGCGAAAACCAAAGGAAAACAAAAATACGAAA 238 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 AACATATATTTGTGAAGGTAAACAAAACAAAACAAAACCGAACATCAATGTGTCTGGATG 298 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 GTGGAGAGCGAGGTGAAAAGTTCACCCAAGTATCACAAACAAATATTTCCTTCCCTGGAA 358 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 TTTTCCCTAGTCCCAAACAAAAACCTCCTTATCACCTCTAAAAAAACATTCCTTTCTCTA 418 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 TCTATCTCTCTCTCTGTCTGTCTCTCTGTCTGTCTCTGTATGTAACTGTGTGCGTGGTGT 478 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 TGAGTAAAAATTAACGAACCTTACAAAACAGCAAACAAACAAACAAACAAACTCCTTATT 538 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 GAGAAGATACTTATATATATATCGGATCGGTTCTATACAAAAGGTGTGAAAAGATTATGA 598 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 TGCATTATAAGCAGTCAGTGACGTGTTTAGGGAAAGCAAAAGGGTCGCCGGTGCGTACGT 658 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 GGAGGGTAAAGAAATAGTTTTTAATTTACGGAACAGATTTCATCAACAAAGATTAAGTGA 718 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 CGGGGGCAGAGGAATGAGTATGCAATGGTTTAGTTCTCCCACTACTGTGGTTAGCGAATT 778 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 ATAATCTCTCTCCCTGTAATGCCTATCACATTTACCACTTTGAATCTCGAATTTCGGTTT 838 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 TAAACACACACACACACACACACACACACACACACACACACACACACACACACACACACA 898 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 CACACACACACACACACACACACACACACATCCAACGTCTTTTTAGTTGTGTTTGTGATT 958 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 GTGACTGGTGTTGTCGTATTGTGTTGTGTTGGTTTACTTATTTAAGACCTGTTTAAGAAA 1018 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 CAATTGAACGAGAAGTGTGTGTGTGCGTGTTTGAGAGAGTGTTGTGTGATTAGCTAATCG 1078 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 GGAAGGATCTAGTTAGAGCGAACGTCCTTGTTTTTACGTTGTTTTTTTATCTTCTCCACG 1138 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 TTACTTACGTTCCGGCTCGTCTCACTTACGGCAAGTGTTTAACAGAATCGGCTAGACTAA 1198 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 CTTCTTGCAATCATGATAACCTAAGAAATACTACATACAACAATATCGTTCTACACTGGA 1258 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 CAGGGTTAAATAAGGGGTGGGGGAGAGTGGTGCGATAGTACCAAAGGATAAAGTGAGTGA 1318 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 GTGATGCAAAGAAGTGGAAAAGGAGCAAAAGTGAAGGAAATACAACAAAACACACAAACG 1378 consensus_7292#1 ------------------------------------------------------------ consensus_7292#0 TACATAT 1385 consensus_7292#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||