These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7321#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1078 fasta sequence [CGCTGCTGGTCCACGCGATGATGTTGGCGCTAGGCGCTGGTTTTGCTTCGTGTTCTACATCCCGTTCACGGGCAGTGCGTGCGCTGTACAAGCGGGAGGTCGTGTTGTGAACGCGCTGGAAAAACATGCGCTGGAAAGTGAACTGACGTTTTGCAGCAGCAGCAACAGCATCAGGAGCGGCACAAAAAGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCTGGACGCTGCTCTATCGCTCACCTGTAGCGCTCTTCGCTGAAGTGCCTTCAAGTGCATTCCCGACCGCCCCGTAAACCATGCTGACGAATCGAGCGTTCCGTGTCCTTACCTACCTGTTCGGTAGCATAAACATATTCTTCGTGCTGGTCATACTGAGCATGGGTGCCGAACAGCTGCTAATTGACTGGCGAACGGCAATCTACGAGCTTGTGGTACCGTGTGCCTTAAACATCTTCTTCGCCATGTGCTGGATCATTGGGGCGGGCCTGTGGCGTCCGGCCCTAATCGCCATGTTCAAGTACTTCTCCTACATCCAGATGGCACTGCTGGC-GGCCGTCATCC-TGTACTCAGCGTACTACAGCTACACCAAAGGGCTTTCCTCCAATCTGGTCACCGTGATGTCGTTGCTGACTTCCCTGTTCTTCCTTTCCCTGATGGAAGTACTGATAGCGATCGGAACGGAACGTGCCATAGCGAAGGAGCGGAATGTGCTGCGGCTAATGCACACCGGGCAGGAAATGTCCGACTGGAGTCACACG-TAAAAAGTGTCTTTCTGT-GGGAAA-GAAAATGCCTTC-TAAAGAA-TAATAGTTACAGCTTTAAGCTATCGATGGCCTTATATA-GTCAAAGATATTGGC-TTTTTTGGAGAAGCCAC--TGTCGTCCAACTGTCGGCAGACATTAATGTGTTGCCTTACCTAATGCCTTACAAGCAGGGCAGGGATAAATGTTGTAGTTTGATAACTGTACCGCCAAAAATACCTCACGTGTAACAGGTGTAAGCTTTAGTCTTCAGTGTTTAAATGATATAAATAAAGTGTAATAAATGTCGCAAAATATAAAAAAAA] [+] EMBL CNS08LEI [CGCTGCTGGTCCACGCGATGATGTTGGCGCTAGGCGCTGGTTTTGCTTCGTGTTCTACATCCCGTTCACGGGCAGTGCGTGCGCTGTACAAGCGGGAGGTCGTGTTGTGAACGCGCTGGAAAAACATGCGCTGGAAAGTGAACTGACGTTTTGCAGCAGCAGCAACAGCATCAGGAGCGGCACAAAAAGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGTTTGCACCTGCATTCTGGACGCTGCTCCATCGCTCACCTGTAGCGCTCTTCGCTGAAGTGCCTTCAA GCATTCCCGACCGCCCCGTAAACCATGCTGACGAATCGAGCGTTCCGTGTCCTTACCTACCTGTTCGGTAGCATAAACATATTCTTCGTGCTGGTCATACTGAGCATGGGTGCCGAACAGCTGCTAATTGACTGGCGAACGGCAATCTACGAACTCGTGGTACCGTGTGCCTTAAACATCTTCTTCGCCATGTGCTGGATCATTGGGGCGGGCCTGTGGCGCCCGGCCCTAATCGCCATGTTCAAGTACTTCTCCTACATCCAGATGGCACTGCTGGC GGCCGTCATCC TGTACTCAGCGTACTACAGCTACGCCAAAGGGCTTTCCTCCAATCTGGTCACCGTGATGTCGTTGCTGACTTCCCTGTTCTTCCTTTCCCTGATGGAAGTACTGATAGCGATCGGAACGGAACGTGCCATAGCGAAGGAGCGGAATGTGCTGCGGCTAATGCACACCGGGCAGGAAATGTCCGACTGGAGTCACACG TAGAAAGTGTGTTCCTATAGGAAAA GCAAATGCCTTC TAAAGAA TAATAGTTACAGCTTTAAGCTATCGCTGGCCTTATATA GTCAAAGATATTGGC TTTTTTGGAGAAGCCAC attgt ] [+] EMBL BX608587 [ AGCGGGAGGTCGTGTTGTGAACGCGCTGGAAAAACATGCGCTGGAAAGTGAACTGACGTTTTGCAGCAGCAGCAACAGCATCAGGAGCGGCACAAAAAGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCTGGACGCTGCTCTATCGCTCACCTGTAGCGCTCTTCGCTGAAGTGCCTTCAAGTGCATTCCCGACCGCCCCGTAAACCATGCTGACGAATCGAGCGTTCCGTGTCCTTACCTACCTGTTCGGTAGCATAAACATATTCTTCGTGCTGGTCATACTGAGCATGGGTGCCGAACAGCTGCTAATTGACTGGCGAACGGCAATCTACGAGCTTGTGGTACCGTGTGCCTTAAACATCTTCTTCGCCATGTGCTGGATCATTGGGGCGGGCCTGTGGCGTCCGGCCCTAATCGCCATGTTCAAGTACTTCTCCTACATCCAGATGGCACTGCTGGC GGCCGTCATCC TGTACTCAGCGTACTACAGCTACACCAAAGGGCTTTCCTCCAATCTGGTCACCGTGATGTCGCTGCTGACCTCCCTGTTCTTCCTTTCCCTGATGGAAGTACTGATAGCGATCGGAACGGAACGTGCCATAGCGAAGGAGCGGAATGTGCTGCGGCTAATGCACACCGGGCAGGAAATGTCCGACTGGAGTCACACG TAAAAAGTGTCTTTCTGT GGGAAA GAAAATGCCTTC TAAAGAA TAATAGTTACAGCTTTAAGCTATCGATGGCCTTATATA GTCAGAGATATAGGC TTT ] [+] EMBL AGA285879 [ TTTGCAGCAGCAGCAACAGCATCAGGAGCGGCACAAAAAGGCTCNTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCTGGACGCTGCTCTATCGCTCACCTGTAGCGCTCTTCGCTGAAGTGCCTTCAAGTGCATTCCCGACCGCCCCGTAAACCATGCTGACGAATCGAGCGTTCCGTGTCCTTACCTACCTGTTCGGTAGCATAAACATATTCTTCGTGCTGGTCATACTGAGCATGGGTGCCGAACAGCTGCTAATTGACTGGCGAACGGCAATCTACGAGCTTGTGGTACCGTGTGCCTTAAACATCTTCTTCGCCATGTGCTGGATCATTGGGGCGGGCCTGTGGCGTCCGGCCCTAATCGCCATGTTCAAGTACTTCTCCTACATCCAGATGGCACTGCTGGC GGCCGTCATCCTTGTACTCAGCGTACTACAGCTACACCAAAGGGCTTTCCTCCAATCTGGTCACCGTGATGTCGCTGCTGACCTCCCTGTTCTTCCTTTCCCTGATGGAAGTACTGATAGCGATCGGAACGGAACGTGCCATAGCGAAGGAGCGGAATGTGCTGCGGCTAATGCACACCGGGCAGGAAATGTCCGACTGGAGTCACACGTTAAAAAGTGTCTTTCTGT GGGAAAGGAAAATGCCTTCTTAAAGAATTAATAGTTACAGCTTTAAGCTATCGATGGCCTTATATA GT ] [+] EMBL AGA282553 [ GCATCAGGAGCGGCACAAAAAGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCTGGACGCTGCTCTATCGCTCACCTGTAGCGCTCTTCGCTGAAGTGCCTTCAAGTGCATTCCCGACCGCCCCGTAAACCATGCTGACGAATCGAGCGTTCCGTGTCCTTACCTACCTGTTCGGTAGCATAAACATATTCTTCGTGCTGGTCATACTGAGCATGGGTGCCGAACAGCTGCTAATTGACTGGCGAACGGCAATCTACGAGCTTGTGGTACCGTGTGCCTTAAACATCTTCTTCGCCATGTGCTGGATCATTGGGGCGGGCCTGTGGCGTCCGGCCCTAATCGCCATGTTCAAGTACTTCTCCTACATCCAGATGGCACTGCTGGC GGCCGTCATCC TGTACTCAGCGTACTACAGCTACACCAAAGGGCTTTCCTCCAATCCGGTCA ] [-] EMBL CNS08LEJ [ GGTCATACTGAGCATGGGTGCCGAACAGCTGCTAATTAACTGGCGAACGGCAATCTACGAACTCGTGGTACCGTGTGCCTTAAACATCTTCTTCGCCATGTGCTGGATCATTGGGGCGGGCCTGTGGCGCCCGGCCCTAATCGCCATGTTCAAGTACTTCTCCTACATCCAGATGGAACTGCTGGCGGGCCGTCATCC TGTACTCAGCGTACTACAG TACGCCAAAGGGCTTTCCTCCAATCTGGTCACCGTGATGTCGTTGCTGACTTCCCTGTTCTTCCTTTCCCTGATGGAAGTACTGATAGCGATCGGAACGGAACGTGCCATAGCGAAGGAGCGGAATGTGCTGCGGCTAATGCACACCGGGCAGGAAATGTCCCACTGGAGTCACACG TAGAAAGTGTGTTCCTATAGGAAAA GCAAATGCCTTC TAAAGAA TAATAGTTACAGCTTTAAGCTATCGCTGGCCTTATATA GTCAAAGATATTGGC TTTTTTGGAGAAGCCACATTGTCGTCCAACTGTCGGCAGACATTAATGTGTTGCCTTACCTAATGCCTTACAAGCAGGGCAGGGATAAATGTTGTAGTTTGATAACTGTACCGCCAAAAATACCTCACGTGTAACAGGTGTAAGCTTTAGTCTTCAGTGTTTAAATGATATAAATAAAGTGTAATAAATGTCGCAAAATATA ] [-] EMBL AGA280924 [ GGAAATGTCCGACTGGAGTCACACG TAAAAAGTGTCTTTCTGT GGGAAA GAAAATGCCTTC TAAAGAA TAATAGTTACAGCTTTAAGCTATCGATGGCCTTATATAGGTCAGAGATCTAAGCTTTTTTTGGAGAAGCCAC TGTCGTTCAACTGTAGGCAGACATTAATGTGTTGCCTTACATAATGCCTAACACGCAGGGCAGGGATAAATGTTGTAGTTTGATAACTGTACCGCCAAAAATACCTCACGTGTAACAGGTGTAAGCTTTAGTCTTCAGTGTTTAAATGATATAAATAAAGTGTAACAAATCGCACAAAGTCTAAAAAAAA] consensusID : consensus_7321#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1005 fasta sequence [CCCGCAGGTTNATATTGGCGTATGCGCTGGTTTTGCTTCGTGTTCTACATCCCGTTCACGGGCAGTGCGTGCGTGTACGTAAGCGGGAGGTCGTGTTGTGAACGCGCTGGAAAAACATGCGCTGGAAAGTGAACTGACGTTTTTGCAGCAGCAGCAACAGCATCAGTGAGCGGCACAAAAATGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCTGGACGCTGCTCTATCGCTACACCTGTAGCGCTACTTCGCTGGAACGGCAGCGAGGAAGCCGCACAGAAACCTGGTCCCCCACTCCCGTATCAGTCACCATGACCATGGGCAAAATACTCTGCGTGCTGATCGCCTCAGTGAACCTGGTCGCGATGGCGTACACCGTGTACTCGATCATGCACTACTTGGATGAGCAGCCGCTGCTCGAAATCTTCATCTCACCGTGTCTCGCCAACATGGTACTGGCCGTGCTGCTAGTTATAGGAATCGCAACGCAAGAAATCTCTACTCATAAGGCTGTTTANAAATATTCCTCTACGCTCAGCTCGTGTTCGCCCTGCTGATGGTGGTTATACGGTCATCGGTNNCTNCGAAAGCGTCAAAGCTGCCGATGATGGTCGAACGGCGTACTTNCAGTATTATGTTACCTGGGTACGTGCCGTAGAGCTCGTAATAGTGTCCTCCACAATCGAGAACCTGCGGAAAAGGCTCAACCCGGNGGCAAGGACTGGTACGTGTACATGCCCGTAGACAGCCGCTAATCGTGTTCATCGTAGTGTGTCTGCTGAAGGAGTGTGGCATGCCAATTCTCCGCTAGTAGCCCGNGCATAAAAAACCTTCCAAACTGNTCCTTTCACACTTANAAACAAACTTTCCGTTCCNCAACGTTCACANCATAAACCCTTAAACACANCAANACANCAACACAACAAAAACAACCANCGCCAACTGATCTNCCCACCCGCCAAANCNCACNATCAATTCCCCCCCCTTA] [+] EMBL AL934832 [CCCGCAGGTTNATATTGGCGTATGCGCTGGTTTTGCTTCGTGTTCTACATCCCGTTCACGGGCAGTGCGTGCGTGTACGTAAGCGGGAGGTCGTGTTGTGAACGCGCTGGAAAAACATGCGCTGGAAAGTGAACTGACGTTTTTGCAGCAGCAGCAACAGCATCAGTGAGCGGCACAAAAATGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCTGGACGCTGCTCTATCGCTACACCTGTAGCGCTACTTCGCTGGAACGGCAGCGAGGAAGCCGCACAGAAACCTGGTCCCCCACTCCCGTATCAGTCACCATGACCATGGGCAAAATACTCTGCGTGCTGATCGCCTCAGTGAACCTGGTCGCGATGGCGTACACCGTGTACTCGATCATGCACTACTTGGATGAGCAGCCGCTGCTCGAAATCTTCATCTCACCGTGTCTCGCCAACATGGTACTGGCCGTGCTGCTAGTTATAGGAATCGCAACGCAAGAAATCTCTACTCATAAGGCTGTTTANAAATATTCCTCTACGCTCAGCTCGTGTTCGCCCTGCTGATGGTGGTTATACGGTCATCGGTNNCTNCGAAAGCGTCAAAGCTGCCGATGATGGTCGAACGGCGTACTTNCAGTATTATGTTACCTGGGTACGTGCCGTAGAGCTCGTAATAGTGTCCTCCACAATCGAGAACCTGCGGAAAAGGCTCAACCCGGNGGCAAGGACTGGTACGTGTACATGCCCGTAGACAGCCGCTAATCGTGTTCATCGTAGTGTGTCTGCTGAAGGAGTGTGGCATGCCAATTCTCCGCTAGTAGCCCGNGCATAAAAAACCTTCCAAACTGNTCCTTTCACACTTANAAACAAACTTTCCGTTCCNCAACGTTCACANCATAAACCCTTAAACACANCAANACANCAACACAACAAAAACAACCANCGCCAACTGATCTNCCCACCCGCCAAANCNCACNATCAATTCCCCCCCCTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7321#0 CGCTGCTGGTCCACGCGATGATGTTGGCGCTAGGCGCTGGTTTTGCTTCGTGTTCTACAT 60 consensus_7321#1 ---------CCCGCAGGTTNATATTGGCG-TATGCGCTGGTTTTGCTTCGTGTTCTACAT 50 ** * * * ** ****** ** *************************** consensus_7321#0 CCCGTTCACGGGCAGTGCGTGCGC-TGTACAAGCGGGAGGTCGTGTTGTGAACGCGCTGG 119 consensus_7321#1 CCCGTTCACGGGCAGTGCGTGCGTGTACGTAAGCGGGAGGTCGTGTTGTGAACGCGCTGG 110 *********************** * ****************************** consensus_7321#0 AAAAACATGCGCTGGAAAGTGAACTGACGTTTT-GCAGCAGCAGCAACAGCATCAG-GAG 177 consensus_7321#1 AAAAACATGCGCTGGAAAGTGAACTGACGTTTTTGCAGCAGCAGCAACAGCATCAGTGAG 170 ********************************* ********************** *** consensus_7321#0 CGGCACAAAAA-GGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCT 236 consensus_7321#1 CGGCACAAAAATGGCTCCTTCCCGTGCAGCAGCTAGAAGACGTGATTGCACCTGCATTCT 230 *********** ************************************************ consensus_7321#0 GGACGCTGCTCTATCGCT-CACCTGTAGCGCT-CTTCGCTGAAGTGCCTTCAAGTGCATT 294 consensus_7321#1 GGACGCTGCTCTATCGCTACACCTGTAGCGCTACTTCGCTGGAACGGCAGCGAGGAAGCC 290 ****************** ************* ******** * * * * ** consensus_7321#0 CCCGACCGCCCCGTAAACCATGCTGACGAATCGAGCGTTCCGTGTCCTTACCTACCTGTT 354 consensus_7321#1 GCACAGAAACCTG-GTCCCCCACTCCCGTATCAGTCACCATG-ACCATGGGCAAAATACT 348 * * ** * ** ** ** *** * * * * * * * * consensus_7321#0 CGGTAGCATAAACATATTCTTCGTGCTGGTCATACTGA-GCAT---GGGTGC-CGAACAG 409 consensus_7321#1 CTGCGTGCTGATCGCCTCAGTGAACCTGGTCGCGATGGCGTACACCGTGTACTCGATCAT 408 * * * * * * * ****** ** * * * ** * *** ** consensus_7321#0 CTGCTAATTGACTGGCGAACGGCAATCTACGAGCTT-GTGGTACCGTGTGCCTTAAACAT 468 consensus_7321#1 GCACTACTTGGATGAGCAGCCGCTGCTCGAAATCTTCATCTCACCGTGTCTCGCCAACAT 468 *** *** ** * * ** * *** * ******* * ***** consensus_7321#0 CTTCTTCGCCATGTGCTGGATCATTGGGGCGG--GCCTGTGGCGTC-CGGCCCTAATCGC 525 consensus_7321#1 GGTACTGGCCGTGCTGCTAGTTATAGGAATCGCAACGCAAGAAATCTCTACTCATAAGGC 528 * * *** ** * ** ** * * * ** * * * * ** consensus_7321#0 CATGTTCAAGTACTTCTCCTACATCCAGATGGCACTGCTGGCGGCCGTCATCCTGTACTC 585 consensus_7321#1 TGTTTANAAATA-TTCCTCTACGCTCAGCTCG---TGTTCGCCCTGCTGATGGTG-GTTA 583 * * ** ** *** **** *** * * ** * ** * ** ** * consensus_7321#0 AGCGTACTACAGCTACACCAAAGGGCTTTCCTCCAATCTGGTCACCGTGATGTCGTTGCT 645 consensus_7321#1 TACGGTCATCGGTNNCTNCGAAAG-----CGTCAAAGCTGCCGATGATGGTCGAACGGCG 638 ** * * * * * ** * * ** ** *** * ** * ** consensus_7321#0 GACTTCCCTGTTCTTCCTTTCCCTGATGGAAGTACTGATAGCGATCGGAACGGAACGTGC 705 consensus_7321#1 TACTTNC--AGTATTATGTTACCTGG-GTACGTGCCG-TAGAGCTCGTAATAGTGTCCTC 694 **** * * ** ** **** * * ** * * *** * *** ** * * consensus_7321#0 CATAGCGAAGGAGCGGAATGTGCTGCGGCTAATGCACACCGGGCAGGAAATGTCCGACTG 765 consensus_7321#1 CACAATCGAGAACCTGCG---GAAAAGGCTCA-ACCCGGNGGCAAGGACTGGTACG--TG 748 ** * ** * * * * **** * * * ** **** ** ** ** consensus_7321#0 GAGTCACACGTAAAAAGTGTCTTTCTGTGGGAA--AGAAAATGCCTTCTAAAGAATAATA 823 consensus_7321#1 TACATGCCCGTAGACAGCCGCTAATCGTGTTCATCGTAGTGTGTCTGCTGAAGGAGTGTG 808 * * **** * ** ** *** * * ** ** ** *** * * consensus_7321#0 G--TTACAGCTTTAAGCTATCGAT--GGCCTTATATAGTCAAAGATATTGGCTTTTTTGG 879 consensus_7321#1 GCATGCCAATTCTCCGCTAGTAGCCCGNGCATAAAAAACCTTCCAAACTGNTCCTTTC-- 866 * * ** * * **** * * ** * * * * * ** *** consensus_7321#0 AGAAGCCACTGTCGTCCAACTGTCGGCAGACATTAATGTGTTGCCTTACCTAATGCCTTA 939 consensus_7321#1 ----ACACTTANAAACAAACTTTCCGTT--CCNCAACGT-TCACANCA--TAAACCCTTA 917 * * * **** ** * * ** ** * * * *** ***** consensus_7321#0 CAAGCAGGGCAGGGATAAATGTTGTAGTTTGATAACTGTACCGCCAAAAATACCTCACGT 999 consensus_7321#1 AACACANCA-ANACANCAACACAACAAA--AACAACC--ANCGCCAACTGATCTNCCCAC 972 * ** * * ** * * *** * ****** * * * consensus_7321#0 GTAACAGGTGTAAGCTTTAGTCTTCAGTGTTTAAATGATATAAATAAAGTGTAATAAATG 1059 consensus_7321#1 CCGCCAAANCNCACNATCAATTCCCCCCCCTTA--------------------------- 1005 ** * * * * * *** consensus_7321#0 TCGCAAAATATAAAAAAAA 1078 consensus_7321#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||