These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7326#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1091 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCTTAACTCACCTGGATTGACTCACCACGAAAGTTTCTGTGCTCTGACGATGTTAAAATTTGCGAGAACAATAGTGAATTGCTGTGATTATTGAAAATTTGTAAAAATATTCTTTTTTTTTTAAACAAACAAAACCTTACCCTCTACATGAATCAAAGCTTAAGTTAATGAATTCCGCTGACTGTGTACAAATGCTCCCAGTGTATGTAAAAGTAAAGGCTTTATACTAGTATGCGTACTCTCTAAATCTTGTCATTATCCTGTGTCAACTTGTAAACATCACGAATCGATTATTACCAAATCGGGTTTAGCTTATTTAATAATGTATTATAGTTGAGTTTCTTGCTACATTTTCTCTAGCAACGATAACAACTACACAACCGCCATAACACAGGTAGTACGCTCATCGAGAGAAGGGAGAGAGAGAGCAATTACTTAAACGGGTCAGAATTGATTACGGACGGCAACTTATGTGCGAATAAAACGTGTAAAGACTTAATTTCACAACAAAAAATAAGGATTTCGTCGTGAAATATAAAGAATTAATTATGAATTGTGTATGAATCTGCATGAGCATCCCAACAGTTACGGGTAGTGGATGAACATAGGATGGTTTCTTATGCACCTCCAAAAGGGATAAAATCAAGGTGCATAACAAGTAATCAATAGCAGCACGAAATGGAATTTAGTCTTACAAAAAAAAGTTAATTTAAACACAACACCCAGTCTACAGTCCACGTTAAGTGTATCTTTTCCATCGTGCACACACGGCCGCTAAAACACTGGTAACTCACTGATCCCGTACTAATGAGAAATGTTAAATGTTAGCTGAAGCTGGTGAAGAAACATCCAAACGGGTGCCTGATATTTTGTAAATTGNATTTTTTCCCCTTTTTAATTTTGCAAAGTATGGTTGCATGTAGAANGAGAGGCATATTCTCAATCCCTTAGGGCAAGTGTGTAAAGTAAACAGAAAAACCGAGACATCACTGATCATTAATCNATAACTTACGTAGAGAAGCACGCCCAAACTCTCTGCNAAGCGATGTGTAATANACTACCAC] [+] EMBL BM643468 [CCGCCCACGCGTCCGCCCACGCGTCCGGCTTAACTCACCTGGATTGACTCACCACGAAAGTTTCTGTGCTCTGACGATGTTAAAATTTGCGAGAACAATAGTGAATTGCTGTGATTATTGAAAATTTGTAAAAATATTCTTTTTTTTTTAAACAAACAAAACCTTACCCTCTACATGAATCAAAGCTTAAGTTAATGAATTCCGCTGACTGTGTACAAATGCTCCCAGTGTATGTAAAAGTAAAGGCTTTATACTAGTATGCGTACTCTCTAAATCTTGTCATTATCCTGTGTCAACTTGTAAACATCACGAATCGATTATTACCAAATCGGGTTTAGCTTATTTAATAATGTATTATAGTTGAGTTTCTTGCTACATTTTCTCTAGCAACGATAACAACTACACAACCGCCATAACACAGGTAGTACGCTCATCGAGAGAAGGGAGAGAGAGAGCAATTACTTAAACGGGTCAGAATTGATTACGGACGGCAACTTATGTGCGAATAAAACGTGTAAAGACTTAATTTCACAACAAAAAATAAGGATTTCGTCGTGAAATATAAAGAATTAATTATGAATTGTGTATGAATCTGCATGAGCATCCCAACAGTTACGGGTAGTGGATGAACATAGGATGGTTTCTTATGCACCTCCAAAAGGGATAAAATCAAG ] [+] EMBL BM613212 [ ccgAGTGAATTGCTGTGATTATTGAAAATTTGTAAAAATATTCTTTTTTTTTTAAACAAACAAAACCTTACCCTCTACATGAATCAAAGCTTAAGTTAATGAATTCCGCTGACTGTGTACAAATGCTCCCAGTGTATGTAAAAGTAAAGGCTTTATACTAGTATGCGTACTCTCTAAATCTTGTCATTATCCTGTGTCAACTTGTAAACATCACGAATCGATTATTACCAAATCGGGTTTAGCTTATTTAATAATGTATTATAGTTGAGTTTCTTGCTACATTTTCTCTAGCAACGATAACAACTACACAACCGCCATAACACAGGTAGTACGCTCATCGAGAGAAGGGAGAGAGAGAGCAATTACTTAAACGGGTCAGAATTGATTACGGACGGCAACTTATGTGCGAATAAAACGTGTAAAGACTTAATTTCACAACAAAAAATAAGGATTTCGTCGTGAAATATAAAGAATTAATTATGAATTGTGTATGAATCTGCATGAGCATCCCAACAGTTACGGGTAGTGGATGAACATAGGATGGTTTCTTATGCACCTCCAAAAGGGATAAAATCAAGGTGCATAACAAGTAATCAATAGCAGCACGAAATGGAATTTAGTCTTACAAAAA ] [+] EMBL BX622445 [ TTACCCTCTACATGAATCAAAGCTTAAGTTAATGAATTCCGCTGACTGTGTACAAATGCTCCCAGTGTATGTAAAAGTAAAGGCTTTATACTAGTATGCGTACTCTCTAAATCTTGTCATTATCCTGTGTCAACTTGTAAACATCACGAATCGATTATTACCAAATCGGGTTTAGCTTATTTAATAATGTATTATAGTTGAGTTTCTTGCTACATTTTCTCTAGCAACGATAACAACTACACAACCGCCATAACACAGGTAGTACGCTCATCGAGAGAAGGGAGAGAGAGAGCAATTACTTAAACGGGTCAGAATTGATTACGGACGGCAACTTATGTGCGAATAAAACGTGTAAAGACTTAATTTCACAACAAAAAATAAGGATTTCGTCGTGAAATATAAAGAATTAATTATGAATTGTGTATGAATCTGCATGAGCATCCCAACAGTTACGGGTAGTGGATGAACATAGGATGGTTTCTTATGCACCTCCAAAAGGGATAAAATCAAGGTGCATAACAAGTAATCAATAGCAGCACGAAATGGAATTTAGTCTTACAAAAAAAAGTTAATTTAAACACAACACCCAGTCTACAGTCCACGTTAAGTGTATCTTTTCCATCGTGCACACACGGCCGCTAAAACACTGGTAACTCACTGATCCCGTACTAATGAGAAATGTTAAATGTTAGCTGAAGCTGGTGAAGAAACATCCAAACGGGTGCCTGATATTTTGTAAATTGNATTTTTTCCCCTTT ] [+] EMBL BX622411 [ ATGTATTATAGTTGAGTTTCTTGCTACATTTTCTCTAGCAACGATAACAACTACACAACCGCCATAACACAGGTAGTACGCTCATCGAGAGAAGGGAGAGAGAGAGCAATTACTTAAACGGGTCAGAATTGATTACGGACGGCAACTTATGTGCGAATAAAACGTGTAAAGACTTAATTTCACAACAAAAAATAAGGATTTCGTCGTGAAATATAAAGAATTAATTATGAATTGTGTATGAATCTGCATGAGCATCCCAACAGTTACGGGTAGTGGATGAACATAGGATGGTTTCTTATGCACCTCCAAAAGGGATAAAATCAAGGTGCATAACAAGTAATCAATAGCAGCACGAAATGGAATTTAGTCTTACAAAAAAAAGTTAATTTAAACACAACACCCAGTCTACAGTCCACGTTAAGTGTATCTTTTCCATCGTGCACACACGGCCGCTAAAACACTGGTAACTCACTGATCCCGTACTAATGAGAAATGTTAAATGTTAGCTGAAGCTGGTGAAGAAACATCCAAACGGTTGCCTGATATTTTGTAAATTGTATTTTTTCCCCTTTTTAATTTTGCAAAGTATGGTTGCATGTAGAANGAGAGGCATATTCTCAATCCCTTAGGGCAAGTGTGTAAAGTAAACAGAAAAACCGAGACATCACTGATCATTAATCNATAACTTACGTAGAGAAGCACGCCCAAACTCTCTGCNAAGCGATGTGTAATANACTACCAC] consensusID : consensus_7326#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 673 fasta sequence [CGTTATACAAATAAGTGACATAGCGAAATGAACTAATAACAACAGGTCCATGCATAATACAAAAAGAAAAAGGAACAGTAACAATTCGAATCCCAAGCGGAGTGAATAATGCAATGCAAATAGCGATCTCATGGCATGATGAGGTATGAGAATGGCAATTATAAATCAAAGAGTTTTGTAGGATGAATGAGGCAGCTGCTGTACACGATAAAGGGGGGCGGCGTTAGGGAGATGTGTCAGGCACACGGAAAAATGGTGGACGCGCTTCCATTTAGTATAGATGCGTTATGGGGCTAATCCTATCCACGAATAGATTGAAACGAATGTTCTGCAGGAAACAATAGGAAAAGAAGAAAACGATGCAACAAATACAAATCTTCTTCATAATCCACAAAAAAGAGTGTGTACGGTATAGAGAAATGTATTCTTTCGCCTTGTAGACGGGGTGTAGAAATCATAATAACAAACTCTCTTCTCCCCCCTTTTACGCTTAACTCACCTGGATTGACTCACCACGAAAGTTTCTGTGCTCTGACGATGTTAAAATTTGCGAGAACNATAGTGAATTGCTGTGATTATTGAAAATTTGTAAAAATATTCTTTTTTTTTTTAAACAAACAAAACCTTACCCTCTACATGAATCAAAGCTTAAGTTAATGAATTCCCGCTGACT] [-] EMBL AGA280908 [CGTTATACAAATAAGTGACATAGCGAAATGAAGTAATAACAACAGGTCCATGCATAATACAAAAAGAAAAAGGAACAGTAACAATTCGAATCCCAAGCGGAGTGAATAATGCAATGCAAATAGCGATCTCATGGCATGATGAGGTATGAGAATGGCAATTATAAATCAAAGAGTTTTGTAGGATGAATGAGGCAGCTGCTGTACACGATAAAGGGGGGCGGCGTTAGGGAGATGTGTCAGGCACACGGAAAAATGGTGGACGCGCTTCCATTTAGTATAGATGCGTTATGGGGCTAATCCTATCCACGAATAGATTGAAACGAATGTTCTGCAGGAAACAATAGGAAAAGAAGAAAACGATGCAACAAATACAAATCTTCTTCATAATCCACAAAAAA ] [+] EMBL BX618525 [ gAAGGGACATAGCGAAATGAACTAATAACAACAGGTCCACGCATAATACAAAAAGAAAAAGGAACAGTAACAATGCGAAACCCAAGCGGAGGGAATAATGCAAGGCAAAT ] [+] EMBL BX621038 [ GACATAGCGAAATGAACTAATAACAACAGGTCCATGCATAATACAAAAAGAAAAAGGAACAGTAACAATTCGAATCCCAAGCGGAGTGAATAATGCAATGCAAATAGCGATCTCATGGCATGATGAGGTATGAGAATGGCAATTATAAATCAAAGAGTTTTGTAGGATGAATGAGGCAGCTGCTGTACACGATAAAGGGGGGCGGCGTTAGGGAGATGTGTCAGGCACACGGAAAAATGGTGGACGCGCTTCCATTTAGTATAGATGCGTTATGGGGCTAATCCTATCCACGAATAGATTGAAACGAATGTTCTGCAGGAAACAATAGGAAAAGAAGAAAACGATGCAACAAATACAAATCTTCTTCATAATCCACAAAAGTGAGTGTGTACGGTATAGAGAAATGTATTCTTTCGCCTTGTAGACGGGGTGTAGAAATCATAATAACAAACTCTCTTCTCCCCCCTTTTACGCTTAACTCACCTGGATTGACTCACCACGAAAGTTTCTGTGCTCTGACGATGTTAAAATTTGCGAGAACNATAGTGAATTGCTGTGATTATTGAAAATTTGTAAAAATATTCTTTTTTTTTTTAAACAAACAAAACCTTACCCTCTACATGAATCAAAGCTTAAGTTAATGAATTCCCGCTGACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7326#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCTTAACTCACCTGGATTGACTCACCACGAAAG 60 consensus_7326#1 ------------------------------------------------------------ consensus_7326#0 TTTCTGTGCTCTGACGATGTTAAAATTTGCGAGAACAATAGTGAATTGCTGTGATTATTG 120 consensus_7326#1 ------------------------------------------------------------ consensus_7326#0 AAAATTTGTAAAAATATTCTTTTTTTTTTAAACAAACAAAACCTTACCCTCTACATGAAT 180 consensus_7326#1 ------------------------------------------------------------ consensus_7326#0 CAAAGCTTAAGTTAATGAATTCCGCTGACTGTGTACAAATGCTCCCAGTGTATGTAAAAG 240 consensus_7326#1 ------------------------------------------------------------ consensus_7326#0 TAAAGGCTTTATACTAGTATGCGTACTCTCTAAATCTTGTCATTATCCTGTGTCAACTTG 300 consensus_7326#1 ------------------------------------------------------------ consensus_7326#0 TAAACATCACGAATCGATTATTACCAAATCGGGTTTAGCTTATTTAATAATGTATTATAG 360 consensus_7326#1 ------------------------------------------------------------ consensus_7326#0 TTGAGTTTCTTGCTACATTTTCTCTAGCAACGATAACAACTACACAACCGCCATAACACA 420 consensus_7326#1 ---------------CGTTATACAAATAAGTGACA-TAGCGAAATGAAC-TAATAACAAC 43 * ** * * * ** * * * * * * * ****** consensus_7326#0 GGTAGTACGCTCATCGAGAGAAGGGAGAGAGAGAGCAATTACTTAAA--CGGGTCAGAAT 478 consensus_7326#1 AGGTCCATGCATAATACAAAAAGAAAAAGGAACAGTAACAATTCGAATCCCAAGCGGAGT 103 * * ** * * *** * ** * ** ** * * ** * * ** * consensus_7326#0 TGATTACGGACGGCAACTTATGTGCGAATAAAACGTGTAAAGACTTAATTTCACAACAAA 538 consensus_7326#1 GAATAATGCAATGCAAATAGCGATCTCATGGCATG-ATGAGGTATGAGAATGGCAATTAT 162 ** * * * **** * * * ** * * * * * * * * *** * consensus_7326#0 AAAT--AAGGATTTCGTCGTGAAATATAAAGAATTAATTATGAATTGTGTATGAAT-CTG 595 consensus_7326#1 AAATCAAAGAGTTTTGTAG-GATGAATGAGGCAGCTGCTGTACACGATAAAGGGGGGCGG 221 **** *** *** ** * ** ** * * * * * * * * * * * consensus_7326#0 CAT--GAGCATCCCAACAGTTAC--GGGTAGTGGATGAACATAGGATGGTTTCTTATGCA 651 consensus_7326#1 CGTTAGGGAGATGTGTCAGGCACACGGAAAAATGGTGGACGCGCTTCCATTTAGTATAGA 281 * * * * *** ** ** * * ** ** *** *** * consensus_7326#0 CCTCCAAAAGGGATAAAATCAAG-GTGCATAACAAGTAATCAATAG-CAGCACGAAATGG 709 consensus_7326#1 TGCGTTATGGGGCTAATCCTATCCACGAATAGATTGAAACGAATGTTCTGCAGGAAACAA 341 * *** *** * * *** * ** *** * *** **** consensus_7326#0 AATTTAGTCTTACAAAAAAAAGTTAATTTAAACACAACACCCAGTCTACAGTCCACGTTA 769 consensus_7326#1 ----TAGGAAAAGAAGAAAACGATGCAACAAATACAA-ATCTTCTTCATAATCCACA--A 394 *** * ** **** * * *** **** * * * * * ***** * consensus_7326#0 AGTGTATCTTTTCCATCGTGCACACACGGCCGCTAAAACACTGGTAACTCACTGATCCCG 829 consensus_7326#1 AAAAGAGTGTGTACGGTATAGAGAAATGTATTCTTTCGCCTTGTAGACGGGGTG------ 448 * * * * * * * * * * ** * ** ** ** consensus_7326#0 TACTAATGAGAAATGTTAAATGTTAGCTGAAGCTGGTGAAGAAACATCCAAACGGGTGCC 889 consensus_7326#1 TAGAAATCATAATAACAAACTCTCTTCTCCCCCCTTTTACGCTTAACTCACCTGGAT--- 505 ** *** * ** ** * * ** * * * * * ** ** * consensus_7326#0 TGATATTTTGTAAATTGNATTTTTTCCCCTTTTTAATTTTGCAAAGTATGGTTGCAT--G 947 consensus_7326#1 TGACTCACCACGAA---AGTTTCTGTGCTCTGACGATGTTAAAATTTGCGAGAACNATAG 562 *** ** *** * * * ** ** ** * * * * consensus_7326#0 TAGAANGAGAGGCATATTCTCAATCCCTTAGGGCAAG--TGTGTAAAGTAAACAGAAAAA 1005 consensus_7326#1 TGAATTGCTGTGATTATTGAAAATTTGTAAAAATATTCTTTTTTTTTTTAAACAAACAAA 622 * * * * **** *** * * * * * * ****** * *** consensus_7326#0 CCGAGACATCACTGATCATTAATCNATAACTTACGTAGAGAAGCACGCCCAAACTCTCTG 1065 consensus_7326#1 ACCTTAC-CCTCTA--CATGAATCAA-AGCTTAAGTTAATGAATTCCCGCTGACT----- 673 * ** * ** *** **** * * **** ** * * * * * *** consensus_7326#0 CNAAGCGATGTGTAATANACTACCAC 1091 consensus_7326#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||