|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7327#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1148 fasta sequence
[CCATTCTAGCCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGTTTGGTTGTGTGCGTTATTTATTACCTTTTTTGTTTCGTTTTTTTTTTGTTGAGAATAAACAACCACAGCAAACGGTAGTTCTGTGTTTTCTCATCTTGTGAATAGAAAAGTGTTGTGCTTTATCAAATCTTTGGATGAATCTCGTGGGATCAGGAAAAGAAGATTTATGAATCCCCAGAGGTGCATCAATATCTAAAGAGTTAACATTTGCACTCTCCTTGTTACGGGTAGCTATGAACTTCGAATGAGACGGACCCTCGCATATGACAAGCACTGGTCAGCTATGACGAGATGCGTAAAAGCGTATGCGAATTTATATTTAATACACACTCTTACAATGAAACAAGCCATCAATCATAGTGCCAACAGACAATTGTTCGGCGTGAAGTGCAATGAAGAGGCAATTTATTCATAAGTCTTTAGATATTCGTGGTTTTTAAGAGATTCGAATGTCTTTGCCGTAGGTTTATAAAACTTTTAATGCTCATGAATCTCTGTATGAAAGTCTTTAAATACATTCCCTTCAAAGATTGACTGATTTAAAGACTTTAAAGATGAATTCNCATCATAGCTACCAACTAAGGNGC]
[+] EMBL BX609823 [CCATTCTAGCCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGTACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGTTTGGTTGTGTGCGTTATTTATTACCTTTTTTGTTTCGTTTTTTTTTTGTTGAGAATAAACA ]
[+] EMBL BX621959 [ CATAGCTTCGTACTTTGTTTGCTTTATTGCATCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACNGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGTTTGGTTGTGTGCGTTATTTATTACCTTTTTTGTTTCGTTTTTTTTTTGGTGAGAATAAACAAC ]
[+] EMBL BX625727 [ GCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGTTTGGTTGTGTGCGTTATTTATTACCTTTTTTGTTTCGTTTTTTTTTTGTTGAGAATAAACAACCACA ]
[+] EMBL BX627836 [ CCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGTTTGGTTGTGTGCGTTATTTATTACCTTTTTTGTTTCGTTTTTTTTTTGTTGAGAATAAACAACCACAGCAAACGGTAGTTCTGTGTTTTCTCATCTTGTGAATAGAAAAGTGTTGTGCTTTATCAAATCTTTGGATGAATCTCGTGGGATCAGGAAAAGAAGATTTATGAATCCCCAGAGGTGCATCAATATCTAAAGAGTTAACATTTGCACTCTCCTTGTTACGGGTAGCTATGAACTTCGAATGAGACGGACCCTCGCATATGACAAGCACTGGTCAGCTATGACGAGATGCGTAAAAGCGTATGCGAATTTATATTTAATACACACTCTTACAATGAAACAAGCCATCAATCATAGTGCCAACAGACAATTGTTCGGCGTGAAGTGCAATGAAGAGGCAATTTATTCATAAGTCTTTAGATATTCGTGGTTTTTAAGAGATTCGAATGTCTTTGCCGTAGGTTTATAAAACTTTTAATGCTCATGAATCTCTGTATGAAAGTCTTTAAATACATTCCCTTCAAAGATTGACTGATTTAAAGACTTTAAAGATGAATTCNCATCATAGCTACCAACTAAGGNGC]
consensusID : consensus_7327#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 686 fasta sequence
[CAGAATCNGCNCACGAGGGCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGGTTTGGTTGTGTGCGTTATTTATTACCGTTTTTTGTTTCGTTTANTGAGATTGTTGAGAATAAACAACCACAGCAAACGGTAAAAAAAAAAAAATANCAAAAAAGNNGCAGCATGTG]
[+] EMBL BX467627 [CAGAATCNGCNCACGAGGGCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCTCTACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAAGGTTTGGTTGTGTGCGTTATTTATTACCGTTTTTTGTTTCGTTTANTGAGATTGTTGAGAATAAACAACCAC ]
[-] EMBL BX466901 [ gtgcgatcGCGATCACGGGCTGTCGTACGTTGCGGCCGCTCCGGCACCGTACGTGAAGTACGCCGCGCCGGCCGTATCGGTCGTCCATGCCGCACCGGCCCCCGTGCTGAAGTATGCCGTGGCGCCGGCCCCGATCGTGAAGGCGGTTGCACCGGCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGTAGTGCATGCGGCACCGGTGGTTAAGTACGCCGCACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGTCGTCGCTCATGCGCCCGCTCCGCTGCTCAAGTACGCGCCCGCCTACCACGGATGGTAAGCAAGCACCAAAGAAGACCGTCCACCCTTTGGTGGCAAGGAACGTTCGCCCGATCATCT TACGCCATCTGTTTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAGCCATAGTGAA GTTTGGTTGTGTGCGTTATTTATTACC TTTTTTGTTTCGTTT TTTTTTTGTTGAGAATAAACAACCACAGCAAACGGTAAAAAAAAAAAAATANCAAAAAAGNNGCAGCATGTG]
consensusID : consensus_7327#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence
[CAGAATNCCCGAGGTTATTCTAGCCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACTGGGCTGTCGTACTGTTGCTGGCCTGCTCCGGCACCTGTACTGTGAAGTACTGCCTGCGCCTGGCCGTATCTGGTCGTCCATGCCGCACCGGCCCCCGGTGCTGAAGTATGCCTGTGGCTGCCGGCCCGATCGTGAACGTGCGGTTGCACCGGTCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGCTAGTGCATGCGGACACCGGTGGTTAAGTACGCCGACACCGGNCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGATCGTCGCTCATGACGCCCGCCTCCGCTGCTCACAGCTACGCGCCCGACCTACCACGGCATGGTAAGCAAGCACCAAAGCAAGACCGTCCACCCTATNNGGCTGGCCANACGGCANACGTTCGCCCGATCATACTCTACGCCATCTGTACTCCANAGCCCAGCT]
[+] EMBL AL930973 [CAGAATNCCCGAGGTTATTCTAGCCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAATTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGCTCCGGGCTACTACGGCGATCACTGGGCTGTCGTACTGTTGCTGGCCTGCTCCGGCACCTGTACTGTGAAGTACTGCCTGCGCCTGGCCGTATCTGGTCGTCCATGCCGCACCGGCCCCCGGTGCTGAAGTATGCCTGTGGCTGCCGGCCCGATCGTGAACGTGCGGTTGCACCGGTCGGCCACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGCTAGTGCATGCGGACACCGGTGGTTAAGTACGCCGACACCGGNCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGATCGTCGCTCATGACGCCCGCCTCCGCTGCTCACAGCTACGCGCCCGACCTACCACGGCATGGTAAGCAAGCACCAAAGCAAGACCGTCCACCCTATNNGGCTGGCCANACGGCANACGTTCGCCCGATCATACTCTACGCCATCTGTACTCCANAGCCCAGCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7327#0 --------------CCATTCTAGCCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAA 46
consensus_7327#1 -----CAGAATCNGCNCACGAGGGCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAA 55
consensus_7327#2 CAGAATNCCCGAGGTTATTCTAGCCATAGCTTCGTACTTTGTTTGCTTTATTGCAGCCAA 60
* ************************************
consensus_7327#0 TTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGC 106
consensus_7327#1 TTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGC 115
consensus_7327#2 TTTTACCACCAACATGAAGATTCTGCTTCTCCTGGGACTGATCGCCGCCGTGCGGGCCGC 120
************************************************************
consensus_7327#0 TCCGGGCTACTACGGCGATCAC-GGGCTGTCGTAC-GTTGCGG--CCGCTCCGGCACC-G 161
consensus_7327#1 TCCGGGCTACTACGGCGATCAC-GGGCTGTCGTAC-GTTGCGG--CCGCTCCGGCACC-G 170
consensus_7327#2 TCCGGGCTACTACGGCGATCACTGGGCTGTCGTACTGTTGCTGGCCTGCTCCGGCACCTG 180
********************** ************ ***** * * *********** *
consensus_7327#0 TAC-GTGAAGTACG--CCGCGCC-GGCCGTATC-GGTCGTCCATGCCGCACCGGCCCCCG 216
consensus_7327#1 TAC-GTGAAGTACG--CCGCGCC-GGCCGTATC-GGTCGTCCATGCCGCACCGGCCCCCG 225
consensus_7327#2 TACTGTGAAGTACTGCCTGCGCCTGGCCGTATCTGGTCGTCCATGCCGCACCGGCCCCCG 240
*** ********* * ***** ********* **************************
consensus_7327#0 -TGCTGAAGTATGCC-GTGGCGCCGGCCCCGATCGTGAAGG--CGGTTGCACCGG-CGGC 271
consensus_7327#1 -TGCTGAAGTATGCC-GTGGCGCCGGCCCCGATCGTGAAGG--CGGTTGCACCGG-CGGC 280
consensus_7327#2 GTGCTGAAGTATGCCTGTGGCTGCCGGCCCGATCGTGAACGTGCGGTTGCACCGGTCGGC 300
************** ***** * * ************ * ************ ****
consensus_7327#0 CACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGG-TAGTGCATGCGG-CACCGGTG 329
consensus_7327#1 CACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGG-TAGTGCATGCGG-CACCGGTG 338
consensus_7327#2 CACCAGCTACGCCACCATCCATCAGGTGCACGCGCCGGCTAGTGCATGCGGACACCGGTG 360
************************************** ************ ********
consensus_7327#0 GTTAAGTACGCCG-CACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGG-TCG 387
consensus_7327#1 GTTAAGTACGCCG-CACCGGCCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGG-TCG 396
consensus_7327#2 GTTAAGTACGCCGACACCGGNCCCGGTCGTGTCGTACGTCCACTCGGCACCGGCGGATCG 420
************* ****** *********************************** ***
consensus_7327#0 TCGCTCATG-CGCCCGC-TCCGCTGCTCAAG--TACGCGCCCG-CCTACCACGG-ATGGT 441
consensus_7327#1 TCGCTCATG-CGCCCGC-TCCGCTGCTCAAG--TACGCGCCCG-CCTACCACGG-ATGGT 450
consensus_7327#2 TCGCTCATGACGCCCGCCTCCGCTGCTCACAGCTACGCGCCCGACCTACCACGGCATGGT 480
********* ******* *********** ********** ********** *****
consensus_7327#0 AAGCAAGCACCAAAG-AAGACCGTCCACCCTTTGG---TGGCAAGG-----AACGTTCGC 492
consensus_7327#1 AAGCAAGCACCAAAG-AAGACCGTCCACCCTTTGG---TGGCAAGG-----AACGTTCGC 501
consensus_7327#2 AAGCAAGCACCAAAGCAAGACCGTCCACCCTATNNGGCTGGCCANACGGCANACGTTCGC 540
*************** *************** * **** * ********
consensus_7327#0 CCGATCAT-CTCTACGCCATCTGT--TTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAG 549
consensus_7327#1 CCGATCAT-CTCTACGCCATCTGT--TTCCAAGCCCAGCTTCTGCAAGCATCTCTGAAAG 558
consensus_7327#2 CCGATCATACTCTACGCCATCTGTACTCCANAGCCCAGCT-------------------- 580
******** *************** * * *********
consensus_7327#0 CCATAGTGAAG-TTTGGTTGTGTGCGTTATTTATTACC-TTTTTTGTTTCGTTTTTTTT- 606
consensus_7327#1 CCATAGTGAAGGTTTGGTTGTGTGCGTTATTTATTACCGTTTTTTGTTTCGTTTANTGAG 618
consensus_7327#2 ------------------------------------------------------------
consensus_7327#0 -TTGTTGAGAATAAACAACCACAGCAAACGGTAGTTCTGTGTTTTCTCATCTTGTGAATA 665
consensus_7327#1 ATTGTTGAGAATAAACAACCACAGCAAACGGTAAAAAAAAA-------AAAATANCAAAA 671
consensus_7327#2 ------------------------------------------------------------
consensus_7327#0 GAAAAGTGTTGTGCTTTATCAAATCTTTGGATGAATCTCGTGGGATCAGGAAAAGAAGAT 725
consensus_7327#1 AAGNNGCAGCATGTG--------------------------------------------- 686
consensus_7327#2 ------------------------------------------------------------
consensus_7327#0 TTATGAATCCCCAGAGGTGCATCAATATCTAAAGAGTTAACATTTGCACTCTCCTTGTTA 785
consensus_7327#1 ------------------------------------------------------------
consensus_7327#2 ------------------------------------------------------------
consensus_7327#0 CGGGTAGCTATGAACTTCGAATGAGACGGACCCTCGCATATGACAAGCACTGGTCAGCTA 845
consensus_7327#1 ------------------------------------------------------------
consensus_7327#2 ------------------------------------------------------------
consensus_7327#0 TGACGAGATGCGTAAAAGCGTATGCGAATTTATATTTAATACACACTCTTACAATGAAAC 905
consensus_7327#1 ------------------------------------------------------------
consensus_7327#2 ------------------------------------------------------------
consensus_7327#0 AAGCCATCAATCATAGTGCCAACAGACAATTGTTCGGCGTGAAGTGCAATGAAGAGGCAA 965
consensus_7327#1 ------------------------------------------------------------
consensus_7327#2 ------------------------------------------------------------
consensus_7327#0 TTTATTCATAAGTCTTTAGATATTCGTGGTTTTTAAGAGATTCGAATGTCTTTGCCGTAG 1025
consensus_7327#1 ------------------------------------------------------------
consensus_7327#2 ------------------------------------------------------------
consensus_7327#0 GTTTATAAAACTTTTAATGCTCATGAATCTCTGTATGAAAGTCTTTAAATACATTCCCTT 1085
consensus_7327#1 ------------------------------------------------------------
consensus_7327#2 ------------------------------------------------------------
consensus_7327#0 CAAAGATTGACTGATTTAAAGACTTTAAAGATGAATTCNCATCATAGCTACCAACTAAGG 1145
consensus_7327#1 ------------------------------------------------------------
consensus_7327#2 ------------------------------------------------------------
consensus_7327#0 NGC 1148
consensus_7327#1 ---
consensus_7327#2 ---
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||