These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7385#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1101 fasta sequence [GGCCGACACTTCCATGAACGCGAGAAACTCCTCGTCCAGCTCGTCTCGCTCTTCCTCCTCTCCGGTGGTTTGTTGTCGTTGCGACCGTTGATGTCGCTCTCCGCATCCTTCTGTTGCTGCAAAGAGAATGGGGGAAAAAGGATTGGTTGCATATGCAGACGGAACCCATTCGTCTTGAGAGAAATAAAATTTATTTTATTTCTACCCTTCTCGTCCTCTCTTCTTTTCGCCCATCACGCGTGGTACAGACACGCAAAACACGCAAGT-TGCGGGTGGCCAATGGAAAGGTGCTACAATGACTCGCGCATAACGCAATCCAATTTCAAGCCCCAATTCATCCCATTACACTTCCGTTTGCATTCCCCTGAATAGACTCCTTTCACCAGCTGCTCCCCAAAGGCTTACCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTTGATAATCCTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTTCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCCATTTTACCACCCGATGGTACGCCCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCACACCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTACTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTTTGTCTCGCGACTTCCCGATGGGTACATTTTTGTACTCTACATCCAACACACGCTTCATGTTGGTTA-CTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTTTCGATAATTTAATTTAACATTATTAGTTCATACAATTCTATGTTGTTTATTCAAAACTAAAGAAAGTACTTTCACTAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTTTGTGTGTTTCGTTTATGCATCT] [+] EMBL CNS09N6O [GGCCGACACTTCCATGAACGCGAGAAACTCCTCGTCCAGCTCGTCTCGCTCTTCCTCCTCTCCGGTGGTTTGTTGTCGTTGCGACCGTTGATGTCGCTCTCCGCATCCTTCTGTTGCTGCAAAGAGAATGGGGGAAAAAGGATTGGTTGCATATGCAGACGGAACCCATTCGTCTTGAGAGAAATAAAATTTATTTTATTTCTACCCTTCTCGTCCTCTCTTCTTTTCGCCCATCACGCGTGGTACAGACACGCAAAACACGCAAGT TGCGGGTGGCCAATGGAAAGGTGCTACAATGACTCGCGCATAACGCAATCCAATTTCAAGCCCCAATTCATCCCATTACACTTCCGTTTGCATTCCCCTGAATAGACTCCTTTCACCAGCTGCTCCCCAAAGGCTTACCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTTGATAATCCTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTTCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCCATTTTACCACCCGATGGTACGCCCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCACACCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTACTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTT ] [+] EMBL CNS09CD8 [GGCCGACACTTCCATGAACGCGAGAAACTCCTCGTCCAGCTCGTCTCGCTCTTCCTCCTCTCCGGTGGTTTGTTGTCGTTGCGACCGTTGATGTCGCTCTCCGCATCCTTCTGTTGCTGCAAAGAGAATGGGGGAAAAAGGATTGGTTGCATATGCAGACGGAACCCATTCGTCTTGAGAGAAATAAAATTTATTTTATTTCTACCCTTCTCGTCCTCTCTTCTTTTCGCCCATCACGCGTGGTACAGACACGCAAAACACGCAAGT TGCGGGTTGCCAATGGAAAGGTGCTACAATGACTCGCGCATCACGCAATCCAATTTCAAGCCCCAATTCATCCCATTACACTTCCGTTTGCATTCCCCTGAATAGACTCCTTTCACCAGCTGCTCCCCAAAGGCTTACCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTTGATAATCCTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTTCTGCCGCCGGCGGCCACCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCCATTTTACCACCCGATGGTACGCCCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCACACCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTACTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGG ] [-] EMBL CNS09N6N [ CGCAAAACACGCAAGTGTGCGGGTGGCCAATGGAAAGGTGCTACAATGACTCGCGCATTACGCAATCCAATTTCAAGCCCCAATTCATCCCATTACACTTCCGTTTGCATTCCCCTGAATAGACTCCTTTCACCAGCTGCTCCCCAAAGGCTTACCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTTGATAATCCTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTGCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCCATTTTACCACCCGATGGTACGCCCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCACACCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTACTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTTTGTCTCGCGACTTCCCGATGGGTACATTTTTGTACTCTACATCCAACACACGCTTCATGTTGGTTATCTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTTTCGATAATTTAATTTAACATTATTAGTTCATACAATTCTATGTTGTTTATTCAAAACTAAAGAAAGTACTTTCACTAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTTTGTG ] [-] EMBL CNS09CD7 [ ACCAGCTGCTCCCCAAAGGCTTACCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTTGATAATCCTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTGCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCCATTTTACCACCCGATGGTACGCCCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCACACCAGCGGCAAGATGTCGCGGGTCGTAGTGATGCTGTACTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTTTGTCTCGCGACTTCCCGACGGGTACATTTTTGTACTCTACATCCAACACACGCTTCATGTTGGTTA CTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTTTCGATAATTTAATTTAACATTATTAGTTCATACAATTCTATGTTGTTTATTCAAAACTAAAGAAAGTACTTTCACTAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTTTGTGTGTTTCGTTTATGCATCT] consensusID : consensus_7385#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 787 fasta sequence [CGAGAAACTCNTCGTCCAGCTCGTCTCGCTCTTCCTCCTCTGCGGTGGTTCGTTGTCGCGACCGTTGATGTCGCTCTCCGCATCCTTCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTAGATAATCTTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTGCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGT-GCCATT-TTACCACCCGATGGTACGCTCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCATAGCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTGCTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTTTATCACGCGACTTCCCGACGGGCACATTTTTGTACTCTACA-TCCAACACACGCTTCATGTTGGTTACTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTGTCGATAATTTAATTTAACATCATTAGTTCATACAATTCTATGTTGTTTATTCCAAACTAAAGAAAGTACTATCACGTAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTTTGTGTGTTTCGTCCTCGGGCCGATT] [-] EMBL BX624396 [CGAGAAACTCNTCGTCCAGCTCGTCTCGCTCTTCCTCCTCTGCGGTGGTTCGTTGTCGCGACCGTTGATGTCGCTCTCCGCATCCTTCGTCCGTGCTTTCATCCTCGGTGTCACCGAACGGATCGTCCTCAGCTAGATAATCTTGCTCGGAATCGCTACTGTCGGCTGCCTCCCTGGCAGTGCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGT GCCATT TTACCACCCGATGGTACGCTCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCATAGCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTGCTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTTTATCACGCGACTTCCCGACGGGCACATTTTTGTACTCTACA TCCAACACACGCTTCATGTTGGTTACTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTGTCGATAATTTAATTTAACATCATTAGTTCATACAAT ] [-] EMBL AL934961 [ GCTTCAGGCGATCGTTTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGGCCATTGTTACCACCCGATGGTACGCTCGGATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCATAGCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTGCTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCGTTTTATCACGCGACTTCCCGACGGGCACATTTTTGTACTCTACAGTCCAACACACGCTTCATGTTGGTTACTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTGTCGATAATTTAATTTAACATCATTAGTTCATACAATTCTATGTTGTTTATTCCAAACTAAAGAAAGTACTATCACGTAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTTTGTGTGTTTCGTCCTCGGGCCGATT] [-] EMBL BM638784 [ CTTCCAGTAGTTGGTTTGGTGCTTGGTGT GCCATT TTACCACCCGATGGTACGCTCGAATCCACATGTTCTGGGCATGCTTAAGACGTATATCGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCATAGCAGCGGCTGGATGTCGCGGGTCGTAGTGATGCTGTGCTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGCGCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAGCGAATCGTTTTATCACGCGACTTCCCGACGGGCACATTTTTGTACTCTACA TCCAACACACGCTTCATGTTGGTTACTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTGTCGATAATTTAATTTAACATCATTAGTTCATACAATTCTATGTTGTTTATTCCAAACTAAAGAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7385#0 GGCCGACACTTCCATGAACGCGAGAAACTCCTCGTCCAGCTCGTCTCGCTCTTCCTCCTC 60 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 TCCGGTGGTTTGTTGTCGTTGCGACCGTTGATGTCGCTCTCCGCATCCTTCTGTTGCTGC 120 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 AAAGAGAATGGGGGAAAAAGGATTGGTTGCATATGCAGACGGAACCCATTCGTCTTGAGA 180 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 GAAATAAAATTTATTTTATTTCTACCCTTCTCGTCCTCTCTTCTTTTCGCCCATCACGCG 240 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 TGGTACAGACACGCAAAACACGCAAGTTGCGGGTGGCCAATGGAAAGGTGCTACAATGAC 300 consensus_7385#1 ------------------------------------------------------------ consensus_7385#0 TCGCGCATAACGCAATCCAATTTCAAGCCCCAATTCATCCCATTACACTTCCGTTTGCAT 360 consensus_7385#1 ------------CGA--GAAACTCNTCGTCCAGCTCGTCTCGCTCTTCCTCCTCTGCGGT 46 * * ** ** *** ** ** * * * *** * * consensus_7385#0 TCCCCTGAATAGACTCCTTTCACCAGCTGCTCCCCAAAGGCTTACCGTCCGTGCTTTCAT 420 consensus_7385#1 GGTTCGTTGTCGCGACCGTTGAT--GTCGCTCTCCGCATCCTT--CGTCCGTGCTTTCAT 102 * * * ** ** * * **** ** * *** *************** consensus_7385#0 CCTCGGTGTCACCGAACGGATCGTCCTCAGCTTGATAATCCTGCTCGGAATCGCTACTGT 480 consensus_7385#1 CCTCGGTGTCACCGAACGGATCGTCCTCAGCTAGATAATCTTGCTCGGAATCGCTACTGT 162 ******************************** ******* ******************* consensus_7385#0 CGGCTGCCTCCCTGGCAGTTCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGT 540 consensus_7385#1 CGGCTGCCTCCCTGGCAGTGCTGCCGCCGGCGGCCAGCACGGAACGCTTCAGGCGATCGT 222 ******************* **************************************** consensus_7385#0 TTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCC 600 consensus_7385#1 TTTCCGCTCTCAGCTGCTGGGCACATTGCTTCCAGTAGTTGGTTTGGTGCTTGGTGTGCC 282 ************************************************************ consensus_7385#0 ATTTTACCACCCGATGGTACGCCCGGATCCACATGTTCTGGGCATGCTTAAGACGTATAT 660 consensus_7385#1 ATTTTACCACCCGATGGTACGCTCGGATCCACATGTTCTGGGCATGCTTAAGACGTATAT 342 ********************** ************************************* consensus_7385#0 CGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCACACCAGCGGCTGGATGTCGCGGGT 720 consensus_7385#1 CGGAGCACGGATTCGTCGCAGGCAGGCGTCGCATCATAGCAGCGGCTGGATGTCGCGGGT 402 ************************************ * ********************* consensus_7385#0 CGTAGTGATGCTGTACTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGC 780 consensus_7385#1 CGTAGTGATGCTGTGCTGTACTGTGATGGTGCACCGTCCCTTCCTTCGCTTGCCAGAAGC 462 ************** ********************************************* consensus_7385#0 GCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCG 840 consensus_7385#1 GCTTAATCGTGCGGGCATTTTTCTTGCGCTTGCACTTTCGCTTGTTGCGGGAACGAATCG 522 ************************************************************ consensus_7385#0 TTTTGTCTCGCGACTTCCCGATGGGTACATTTTTGTACTCTACATCCAACACACGCTTCA 900 consensus_7385#1 TTTTATCACGCGACTTCCCGACGGGCACATTTTTGTACTCTACATCCAACACACGCTTCA 582 **** ** ************* *** ********************************** consensus_7385#0 TGTTGGTTACTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTTTCGATAATTTAATTT 960 consensus_7385#1 TGTTGGTTACTCAAGTTGCGTTGCTTGTGCAGGTAGGAAGGTTTGTCGATAATTTAATTT 642 ******************************************** *************** consensus_7385#0 AACATTATTAGTTCATACAATTCTATGTTGTTTATTCAAAACTAAAGAAAGTACTTTCAC 1020 consensus_7385#1 AACATCATTAGTTCATACAATTCTATGTTGTTTATTCCAAACTAAAGAAAGTACTATCAC 702 ***** ******************************* ***************** **** consensus_7385#0 -TAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTT 1079 consensus_7385#1 GTAAACACACATTTGCTTATTCAAAGCTTCGTCTGATTGTGAGATTGTAAAACACTTTTT 762 *********************************************************** consensus_7385#0 TGTGTGTTTCGTTTATGCATCT--- 1101 consensus_7385#1 TGTGTGTTTCGTCCTCGGGCCGATT 787 ************ * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||