These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7391#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 990 fasta sequence [CCGCAAAACACTAACGTATGTACGCAAACAATACAGTGTCACAAGGAAACGTTTTGTTCTTTAATTTAAGTAGATAGTTTTTTAATGGTAGCGATAGTGAAGCTGCTGCGTGTGCACTCAGGCACAACGTTGGCTTCAGCCCCCCCACAAAACAGTAAGGTAAAACACCATAGTAAGCAGCTGTCCGGATGGCCAAATCACCAAATCACCAACAGAGGGAGACGGCGTTAGGTGGAAATGCCAATTGTGACACTATTATAGTTTACAGACCGAAAGGAGAAAGTTAAGACACTTGTTTAGGGTGTGTACTTTTGGATAGTGAGTTCTAGGATTTATAGGTTTAACAGATCTTTTAATATTGTTTTAATTTCATTTATAAGCGCAAACTGTAAACAAAAATTGTAGCAAATTGAAACGAGTTCGTACTCGTACTCGTACTGTGGAGCAAGCAGAAGCAGAAGCTTATTTATGAAACATTAGTTCGAAAATAACCAACACAACAGCTACTTCCTATTACTGTGAGTATGTAAGACGTTTGTTTATTCCAA-TTTAAACCACCACCCAATTAGAATCTGCAGGACTGCACTCTATTCCAATTCTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAACCAGCTTCCCGCTCCTTATCATCCGCTTTGTACGAGAATAATCGTCTATGTTTATGTGTGCATATTTAAACGCTATTGCGCATAACGATTTCTGTTTTCCGTTGAAGGCCGTTTGCCAGCGGCTAGCTTTGCACTTATGAATCTTTCCAACAAAAAAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGCCATAAAGGCACTGTCTCTGTGTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGTAGTGCGCACAAATTGGCGTGCGCAAAATGTGATTAGCAGG] [+] EMBL BM628649 [CCGCAAAACACTAACGTATGTACGCAAACAATACAGTGTCACAAGGAAACGTTTTGTTCTTTAATTTAAGTAGATAGTTTTTTAATGGTAGCGATAGTGAAGCTGCTGCGTGTGCACTCAGGCACAACGTTGGCTTCAGCCCCCCCACAAAACAGTAAGGTAAAACACCATAGTAAGCAGCTGTCCGGATGGCCAAATCACCAAATCACCAACAGAGGGAGACGGCGTTAGGTGGAAATGCCAATTGTGACACTATTATAGTTTACAGACCGAAAGGAGAAAGTTAAGACACTTGTTTAGGGTGTGTACTTTTGGATAGTGAGTTCTAGGATTTATAGGTTTAACAGATCTTTTAATATTGTTTTAATTTCATTTATAAGCGCAAACTGTAAACAAAAATTGTAGCAAATTGAAACGAGTTCGTACTCGTACTCGTACTGTGGAGCAAGCAGAAGCAGAAGCTTATTTATGAAACATTAGTTCGAAAATAACCAACACAACAGCTACTTCCTATTACTGTGAGTATGTAAGACGTTTGTTTATTCCAATTTTAAACCACCACCCAATTAGAATCTGCAGGACTGCACTCTATTCCCATTCTCTTCTATTCCAAT ] [+] EMBL BM606011 [ ccgCAAATCACCAAATCACCAACAGAGGGAGACGGCGTTAGGTGGAAATGCCAATTGTGACACTATTATAGTTTACAGACCGAAAGGAGAAAGTTAAGACACTTGTTTAGGGTGTGTACTTTTGGATAGTGAGTTCTAGGATTTATAGGTTTAACAGATCTTTTAATATTGTTTTAATTTCATTTATAAGCGCAAACTGTAAACAAAAATTGTAGCAAATTGAAACGAGTTCGTACTCGTACTCGTACTGTGGAGCAAGCAGAAGCAGAAGCTTATTTATGAAACATTAGTTCGAAAATAACCAACACAACAGCTACTTCCTATTACTGTGAGTATGTAAGACGTTTGTTTATTCCAA TTTAAACCACCACCCAATTAGAATCTGCAGGACTGCACTCTATTCCAATTCTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAACCAGCTTCCCGCTCCTTATCATCCGCTTTGTACGAGAATAATCGTCTATGTTTATGTGTGCATATTTAAACGCTATTGCGCATAACGATTTCTGTTTTCCGTTGAAGGCCGTTTGCCAGCGGCTAGCTTTGCACTTATGAATCTTTCCAACAAAAAAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATT ] [+] EMBL AL930242 [ cccgaggtGAG TCGTACTCGTACTCGTACTGTGGAGC AGCAGAAGCAGAAGCTTATTTATGAAACATTAGTTCGAAAATAACCAACACAACAGCTACTTCCTATTACTGTGAGTATGTAAGACGTTTGTTTATTCCAA TTTAAACCACCACCCAATTAGAATCTGCAGGACTGCACTCTATTCCAATTCTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAACCAGCTTCCCGCTCCTTATCATCCGC TTGTACGAGAATAATCGTCTATGTTTATGTGTGCATATTTAAACGCTATTGCGCATAACGATTTCTGTTTTCCGTTGAAGGCCGTTTGCCAGCGGCTAGCTTTGCACTTATGAATCTTTCCAACAAAAAAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGCCATAAAGGCACTGTCTCTGTGTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGTAGTGCGCACAAATTGGCGTGCGCAAAATGTGATTAGCAGG] consensusID : consensus_7391#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 869 fasta sequence [AAGAATCCCCGAGGTTAATGTGAGTATGTAAGACGTCGTTATTCCAATTTAAACCACCAACCAATTAGAATCTGCAGGACTGCACTCTATTCCAATTCTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAACCAGCTTCCCGCTCCTTATCATCCGCTTTGTACGAGAATAATCGTCTATGTTATATGTGTGCATATTTAAACGCTATTGCGCATAACGATTTCTGTNTTNCCGTTGAAGGCCGTTTGCCAGCGGCTAGCTTTGCACTTATGAATCTTTCCAAC-AAAAAAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGCCATAAAGGCACTGTCTCTGTGTTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGTAGTGCGCACAAATTGGCGTGCGCAAAATGTGATTAGCAGGCGCGCCCGGTGTTTGACCGCGCGCGCTCTATCTGTATCGTTGTTATGTGTTACGTGTGTCGCTGTTTTGTTGCCTCCCGAACACAAGTGTGTGTGTATTTGTCCATTTATAAACTATCGTTTATTGAGGGGAGGGAGAGAAGGATAAAATCACAAGCTATTTGAAACGTACAACATGGGGCGGAGACGTTCATTTATGGCCCCCTGTAACAAATAACAAACGATCAAACGATCAAAAGCAAAACACCGTGACGCTGGAACAGGAATTACTCGGACGCTAGAAATTAAGTAGGTCATATTGAAAGACGGGAATGAGACTAGAATGCGCGAAATATTGTGTAACAGCAAACAACAAATTATACACAAATACTTTTCACA] [+] EMBL AL933537 [AAGAATCCCCGAGGTTAATGTGAGTATGTAAGACGTCGTTATTCCAATTTAAACCACCAACCAATTAGAATCTGCAGGACTGCACTCTATTCCAATTCTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAACCAGCTTCCCGCTCCTTATCATCCGCTTTGTACGAGAATAATCGTCTATGTTATATGTGTGCATATTTAAACGCTATTGCGCATAACGATTTCTGTNTTNCCGTTGAAGGCCGTTTGCCAGCGGCTAGCTTTGCACTTATGAATCTTTCCAAC AAAAAAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGCCATAAAGGCACTGTCTCTGTGTTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGTAGT ] [+] EMBL BX609078 [ AATCTGCAGGACTGCACTCTATTCCAATTCTCTTCTATTCCAATTAAACCACCACCCAATTAGAATCTACAGGACTGCACTAGTCAGAACCAGCTTCGCGCTCCTTCTCATCCGCTTTGTACGAAAATAATCGTCTATGTT TATGTGTGAATATTTAAACGCTATTGCGCATAACTATTTCTGT TTTCCGTTGAAGGCCGTTTGCCAGCGGCTAGCTTTGCACTTATGAATATTTCCAAC AAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATTAATAGGCTT TTGTTAAACATTCTATACGCTGCCATAAAGGCACTGTCTCTGTGTTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGTAGTGCGCACAAATTGGCGTGCGCAAAATGTGATTAGCAGGCGCGCCCGGTGTTTGACCGCGCGCGCTCTATCTGTATCGTTGTTATGTGTTACGTGTGTCGCTGTTTTGTTGCCTCCCGAACACAAGTGTGTGTGTATTTGTCCATTTATAAACTATCGTTTATTGAGGGGAGGGAGAGAAGGATAAAATCACAAGCTATTTGAAACGTACAACATGGGGCGGAGACGTTCATTTATGGCCCCCTGTAACAAATAACAAACGATCAAACGATCAAAAGCAAAACACCGTGACGCTGGAA ] [+] EMBL BX620182 [ CAGCGGCTAGCTTTGCACTTATGAATCTTTCCAACAAAAAAAAAAAAACCAAGAGCTCTATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGCCATAAAGGCACTGTCTCTGTGTTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGTAGTGCGCACAAATTGGCGTGCGCAAAATGTGATTAGCAGGCGCGCCCGGTGTTTGACCGCGCGCGCTCTATCTGTATCGTTGTTATGTGTTACGTGTGTCGCTGTTTTGTTGCCTCCCGAACACAAGTGTGTGTGTATTTGTCCATTTATAAACTATCGTTTATTGAGGGGAGGGAGAGA G AAATCACAAGCTATTTGAAACGTACAACATGGGGCGGAGACGTTCATTTATGGCCCCTTG TAACAAACGATCAAACGATCAAAAGCAAAACACCGTGACGCTGGAACAGGAATTACTCGGACGCTAGAAATTAAGTAGGTCATATTGAAAGACGGGAATGAGACTAGAATGCGCGAAATATTGTGTAACAGCAAACAACAAATTATACACAAATACTTTTCACA] consensusID : consensus_7391#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [AATCCCCCGAGGTTAAAAACTATCTACTTAAATTACAGAACAAACGTTTCCTTGTGACNCTGTATTGTTTGCGTACATACGTTAGTGTTTGTTTCGATTTTTCTATATAAGTTTGTATAGAGACGAACAGGATGATAGTAAGATGGTTTAAAATTGGTGCAAAAACGGTTTAGAAAAAACACGTGTTGGTGTAAGATTCGATAAAATTGAGTCGTTTGAGTAGTTTTCCGATTAGTATTGGCAGTCTTTGCGTATGGGGGGTTTTAGTGAACCACCGATCTACACACAGTACAGGAGAGGAAGCATCTTGTTATACGGGATTTTCATCTGAGCGAGCTGTTACCTTCAAAAGGGATAGTTAATATGTATCCGCTNTTTTTTTCCTTTCTTCTTCTCTACAGTATAATGGCTGTATGGCTTGCGTATGTGTGTAAGCNCAATCTTACTAAAAAGGGTAACAATAATTAACAAAATCTTAAACGTACAGGAAAATCAATACATATCATACATACATACACACAGGAAAGCTTTGCGCGTGGTGCCCAGGCAGGGCTGTATTACCAAAGTCCCACACCTTACAGATAGAGGCGCACGCGGGATTGCATTTGTTCCTNCAGTAACGGCTTTCACGCCAACACCGTGCAACGCTTTACACATAATCCCGGNCGACAACNACCAACAAATAAAAACTCTTACTTCACTTTACACNCACGNAAAAAAATTNTGGTCTTTCATATGTTACACGCGCACCNCGTTGGNANAAAC] [+] EMBL AL933458 [AATCCCCCGAGGTTAAAAACTATCTACTTAAATTACAGAACAAACGTTTCCTTGTGACNCTGTATTGTTTGCGTACATACGTTAGTGTTTGTTTCGATTTTTCTATATAAGTTTGTATAGAGACGAACAGGATGATAGTAAGATGGTTTAAAATTGGTGCAAAAACGGTTTAGAAAAAACACGTGTTGGTGTAAGATTCGATAAAATTGAGTCGTTTGAGTAGTTTTCCGATTAGTATTGGCAGTCTTTGCGTATGGGGGGTTTTAGTGAACCACCGATCTACACACAGTACAGGAGAGGAAGCATCTTGTTATACGGGATTTTCATCTGAGCGAGCTGTTACCTTCAAAAGGGATAGTTAATATGTATCCGCTNTTTTTTTCCTTTCTTCTTCTCTACAGTATAATGGCTGTATGGCTTGCGTATGTGTGTAAGCNCAATCTTACTAAAAAGGGTAACAATAATTAACAAAATCTTAAACGTACAGGAAAATCAATACATATCATACATACATACACACAGGAAAGCTTTGCGCGTGGTGCCCAGGCAGGGCTGTATTACCAAAGTCCCACACCTTACAGATAGAGGCGCACGCGGGATTGCATTTGTTCCTNCAGTAACGGCTTTCACGCCAACACCGTGCAACGCTTTACACATAATCCCGGNCGACAACNACCAACAAATAAAAACTCTTACTTCACTTTACACNCACGNAAAAAAATTNTGGTCTTTCATATGTTACACGCGCACCNCGTTGGNANAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7391#0 CCGCAAAACACTAACGTATGTACGCAAACAATACAGTGTCACAAGGAAACGTTTTGTTCT 60 consensus_7391#1 ------------------------------------------------------------ consensus_7391#2 ------------------------------------------------------------ consensus_7391#0 TTAATTTAAGTAGATAGTTTTTTAATGGTAGCGATAGTGAAGCTGCTGCGTGTGCACTCA 120 consensus_7391#1 ------------------------------------------------------------ consensus_7391#2 ------------------------------------------------------------ consensus_7391#0 GGCACAACGTTGGCTTCAGCCCCCCCACAAAACAGTAAGGTAAAACACCATAGTAAGCAG 180 consensus_7391#1 ------------------------------------------------------------ consensus_7391#2 ------------------------------------------------------------ consensus_7391#0 CTGTCCGGATGGCCAAATCACCAAATCACCAACAGAGGGAGACGGCGTTAGGTGGAAATG 240 consensus_7391#1 ------------------------------------------------------------ consensus_7391#2 -------------AATCCCCCGAGGTTAAAAACTATCTACTTAAATTACAGAACAAACGT 47 consensus_7391#0 CCAATTGTGACACTATTATAGTTTACAGACCGAAAGGAGAAAGTTAAGACACTTGTTTAG 300 consensus_7391#1 ------------------------------------------------------------ consensus_7391#2 TTCCTTGTGACNCTGT-ATTGTTTGCGTACATACGTTAGTGTTTGTTTCGATTTTTCTA- 105 consensus_7391#0 GGTGTGTACTTTTGGATAGTGAGTTCTAGGATTTATAGGTTTAACAGATCTTTTAATATT 360 consensus_7391#1 ------------------------------------------------------------ consensus_7391#2 ----TATAAGTTTGTATAGAGACGAACAGGAT------GATAGTAAGATGGTTTAAAATT 155 consensus_7391#0 GTTTTAATTTCATTT--ATAAGCGCAAACTGTAAACAAAAATTGTAGCAAATTGAAACGA 418 consensus_7391#1 ------------------------------------------------------------ consensus_7391#2 GGTGCAAAAACGGTTTAGAAAAAACACGTGTTGGTGTAAGATTCGATAAAATTGAGTCGT 215 consensus_7391#0 GTTCGTACTCGTACTCGTACTGTGGAGCAAGCAGAAGCAGAAGCTTATTTATGAAACATT 478 consensus_7391#1 ------------------------------------------------------------ consensus_7391#2 TTGAGTAGTTTTCCGATTAGTATTGGCAGTCTTTGCGTATGGGGGGTTTTAGTGAACCAC 275 consensus_7391#0 AGTTCGAAAATAACCAACACAACAGCTACTTCCTATTACTGTGAGTATGTAAGACGTTTG 538 consensus_7391#1 ---------------------AAGAATCCCCGAGGTTAATGTGAGTATGTAAGACGTC-- 37 consensus_7391#2 CGATCTACACACAGTACAGGAGAGGAAGCATCTTGTTATACGGGATTTTCATCTGAGCGA 335 * *** * * * * consensus_7391#0 TTTATTCCAATTTAAACCACCACCCAATTAGAATCTGCAGGACTGCACTCTATTCCAATT 598 consensus_7391#1 GTTATTCCAATTTAAACCACCAACCAATTAGAATCTGCAGGACTGCACTCTATTCCAATT 97 consensus_7391#2 GCTGTTACCTTCAAAAGGGATAGTTAATATGTATCCGCTNTTTTTTTCCTTTCTTCTTCT 395 * ** * * *** * *** * *** ** * * * * * * consensus_7391#0 CTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAA 658 consensus_7391#1 CTCTTCTATTCCAATTAAACCACCGCCCAATTAGAATCTGCAGGACTGCACTAGTCAGAA 157 consensus_7391#2 CTACAGTATAATGGCTGTATGGCTTGCGTATGTGTGTAAGCNCAATCTTACTAAAAAGGG 455 ** *** * * * * ** * * ** * **** ** consensus_7391#0 CCAGCTTCCCGCTCCTTATCATCCGCTTTGTACGAGAATAATCGTCTATGTT-TATGTGT 717 consensus_7391#1 CCAGCTTCCCGCTCCTTATCATCCGCTTTGTACGAGAATAATCGTCTATGTTATATGTGT 217 consensus_7391#2 TAACAATAATTAACAAAATCTTAAACGT-ACAGGAAAATCAATACATATCATACATACAT 514 * * * *** * * * * ** *** * *** * ** * consensus_7391#0 GCATATTTAAACGCTATTGCGCATAACGATTTCT----GTTTTCC-GTTGAAGGCCGTTT 772 consensus_7391#1 GCATATTTAAACGCTATTGCGCATAACGATTTCT----GTNTTNCCGTTGAAGGCCGTTT 273 consensus_7391#2 ACACACAGGAAAGCT-TTGCGCGTGGTGCCCAGGCAGGGCTGTATTACCAAAGTCCCACA 573 ** * ** *** ****** * * * * *** ** consensus_7391#0 GCCAGCGGCTAGCTTTGCACTTATGAAT-CTTTCCAACAAAAAAAAAAAACCAAGAGCTC 831 consensus_7391#1 GCCAGCGGCTAGCTTTGCACTTATGAAT-CTTTCCAACAAAAAAAAAAAACCAAGAGCTC 332 consensus_7391#2 CCTTACAGATAGAGGCGCACGCGGGATTGCATTTGTTCCTNCAGTAACGGCTTTCACGCC 633 * * * *** **** ** * * ** * * ** * * * consensus_7391#0 TATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGC 891 consensus_7391#1 TATATCGTATGGCATTGTATTGTATTACTAAGCTTCGTTGTTAAACATTCTCTGCGCTGC 392 consensus_7391#2 AACACCGT---GCAACGCTTTACACA--TAATCCCGGNCGACAACNACCAACAA------ 682 * * *** *** * ** * *** * * * ** * * consensus_7391#0 CATAAAGGCACTGTCTCTGTGTTT-AAGCATCAAGCATCTTCTCAGTGGACCACACGTGT 950 consensus_7391#1 CATAAAGGCACTGTCTCTGTGTTTTAAGCATCAAGCATCTTCTCAGTGGACCACACGTGT 452 consensus_7391#2 -ATAAAAACTCTTACTTCACTTTACACNCACGNAAAAAAATTNTGGTCTTTCATATGTTA 741 ***** * ** ** ** * ** * * * ** ** * ** consensus_7391#0 AGTGCGCACAA-ATTGGCGTGCGCAAAATGTGATTAGCAGG------------------- 990 consensus_7391#1 AGTGCGCACAA-ATTGGCGTGCGCAAAATGTGATTAGCAGGCGCGCCCGGTGTTTGACCG 511 consensus_7391#2 CACGCGCACCNCGTTGGNANAAAC------------------------------------ 765 ****** **** * consensus_7391#0 ------------------------------------------------------------ consensus_7391#1 CGCGCGCTCTATCTGTATCGTTGTTATGTGTTACGTGTGTCGCTGTTTTGTTGCCTCCCG 571 consensus_7391#2 ------------------------------------------------------------ consensus_7391#0 ------------------------------------------------------------ consensus_7391#1 AACACAAGTGTGTGTGTATTTGTCCATTTATAAACTATCGTTTATTGAGGGGAGGGAGAG 631 consensus_7391#2 ------------------------------------------------------------ consensus_7391#0 ------------------------------------------------------------ consensus_7391#1 AAGGATAAAATCACAAGCTATTTGAAACGTACAACATGGGGCGGAGACGTTCATTTATGG 691 consensus_7391#2 ------------------------------------------------------------ consensus_7391#0 ------------------------------------------------------------ consensus_7391#1 CCCCCTGTAACAAATAACAAACGATCAAACGATCAAAAGCAAAACACCGTGACGCTGGAA 751 consensus_7391#2 ------------------------------------------------------------ consensus_7391#0 ------------------------------------------------------------ consensus_7391#1 CAGGAATTACTCGGACGCTAGAAATTAAGTAGGTCATATTGAAAGACGGGAATGAGACTA 811 consensus_7391#2 ------------------------------------------------------------ consensus_7391#0 ---------------------------------------------------------- consensus_7391#1 GAATGCGCGAAATATTGTGTAACAGCAAACAACAAATTATACACAAATACTTTTCACA 869 consensus_7391#2 ---------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||