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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7394#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1150 fasta sequence
[CTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAA-AGCGTAGCTGTTCACGTTCGATAATGGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTGCTTACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACCGCGAGGCAAACCCATTTCGTCATTGGATGAACGCTAGCGCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCTTTTATCAGCACCGTATCTGGGTACCACAACTTAACGCTAATGTGTGTTATCTTGCGGGACGGTGTATTTGTGTGAAACCGGAGTACGGCAGTAAAAGGGGAGACTTGCTCCACAGCAAGAGCACTAGAGATAGTACTAGAATATTCAAATGATGCAGATGAATGCATCTTTCATGGTATCGTTTGTTCGTGTCAGGCTTCGTCAAAACTGGACCCCACAGATTTATGCACATTCCCTGTACGCAAAGCGTTTGTGTACGGGAATTGTAGCATTGTAAATCCGAGTATAGAGCTATAAATTGTCTTGTAGAGAACAAGCAAACACAACCCAGTCTACCACGCTAAGGAGCCACAATCATTCGAAAGTGTGCATACGCAACAAACAGAAAACGTTCCTAATAATCTCGTACACAACCGTATTCTATGCAGGATTGATTTGTTTTATTTTTCTTGTACCACACGTCAGCTACACGTAAAGCATTTCGCTTTTTATCCTTGTTTTAACCACATTATTTGTTACTTTTTATTCGGCGATCTTTTAACGTCTAACGAAGATCGCCTAGCTACTAGGCTATATTAATATTTCTTAGTTTGATTTAGCAAACAGCAAGTGCAAAACGAAAAAGTGGATAAACTTATGCCATGTCGTGGATCGGTGGGAGCTAAGGCTGAGCAGGATACGGGAAGGGATCATCGTGGAAAGGGATAAGGAAGCAACGTGGAGCGTGGATGCGCTATGTGTGATAGAATACAGATCAAGCTGATTTGAAGGTTTTGACTATAAGTGACATAGTTATATAGAAACATTTGCGTGTGGTTCATTGTGCGGACGGCACACTTCACGCGTTGATGGAAAGCAATATTTTTCGCCCGTTTTTCCTCCTCCCTATCTCTCTCTCTCTCTATTCGGGAT]
[+] EMBL BX628881 [CTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAA AGCGTAGCTGTTCACGTTCGATAATGGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTGCTTACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACCGCGAGGCAAACCCATTTCGTCATTGGATGAACGCTAGCGCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCTTTTATCAGCACCGTATCTGGGTACCACAACTTAACGCTAATGTGTGTTATCTTGCGGGACGGTGTATTTGTGTGAAACCGGAGTACGGCAGTAAAAGGGGAGACTTGCTCCACAGCAAGAGCACTAGAGATAGTACTAGAATATTCAAATGATGCAGATGAATGCATCTTTCATGGTATCGTTTGTTCGTGTCAGGCTTCGTCAAAACTGGACCCCACAGATTTATGCACATTCCCTGTACGCAAAGCGTTTGTGTACGGGAATTGTAGCATTGTAAATCCGAGTATAGAGCTATAAATTGTCTTGTAGAGAACAAGCAAACACAACCCAGTCTACCACGCTAAGGAGCCACAATCATTCGAAAGTGTGCATACGCAACAAACAGAAAACGTTCCTAATAATCTCGTACACAACCGTATTCTATGCAGGATTGATTTGTTTTATTTTTCTTGTACCACACGTCAGCTACACGTAAAGCATTTCGCTTTTTATC ]
[+] EMBL BX619727 [CTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAAGAGCGTAGCTGTTCACGTTCGATAATGGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTGCTTACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACCGCGAGGCAAACCCATTTCGTCATTGGATGAACGCTAGCGCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCTTTTATCAGCACCGTATCTGGGTACCACAACTTAACGCTAATGTGTGTTATCTTGCGGGACGGTGTATTTGTGTGAAACCGGAGTACGGCAGTAAAAGGGGAGACTTGCTCCACAGCAAGAGCACTAGAGATAGTACTAGAATATTCAAATGATGCAGATGAATGCATCTTTCATGGTATCGTTTGTNNGTGTCANGCTTCGTCAAAACTGGACCCCACAGATTTATGCACATTCCCTGTACGCAAAGCGTTTGTGTACGGNAATTGTAGCATNGTAAATCCGAGTATAGAGCTATAAATGGTCTTGTAGAGAACAGGCAAACACAACCCAGTCTACCn ]
[+] EMBL BX613640 [ CCGCGAGGCAAACCCATTTCGTCATTGGATGAACGCTAGCTCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCTTTTATCAGCACCGTATCTGGGTACCACAACTTAACGCTAATGTGTGTTATCTTGCGGGACGGTGTATTTGTGTGAAACCGGAGTACGGCAGTAAAAGGGGAGACTTGCTCCACAGCAAGAGCACTAGAGATAGTACTAGAATATTCAAATGATGCAGATGAATGCATCTTTCATGGTATCGTTTGTTCGTGTCAGGCTTCGTCAAAACTGGACCCCACAGATTTATGCACATTCCCTGTACGCAAAGCGTTTGTGTACGGGAATTGTAGCATTTTAAATCCGAGTATAGAGCTATAAATTGTCTTGTAGAGAACAAGCAAACACAACCCAGTCTACCACGCTAAGGAGCCACAATCATTCGAAAGTGTGCATACGCAACAAACAGAAAACGTTCCTAATAATCTCGTACACAACCGTATTCTATGCAGGATTGATTTGTTTTATTTTTCTTGTACCACACGTCAGCTACACGTAAAGCATTTCGCTTTTTATCCTTGTTTTAACCACATTATTTGTTACTTTTTATTC ]
[+] EMBL BX615986 [ TTGTAAATCCGAGTATAGAGCTATAAATTGTCTTGTAGAGAACAAGCAAACACAACCCAGTCTACCACGCTAAGGAGCCACAATCATTCGAAAGTGTGCATACGCAACAAACAGAAAACGTTCCTAATAATCTCGTACACAACCGTATTCTATGCAGGATTGATTTGTTTTATTTTTCTTGTACCACACGTCAGCTACACGTAAAGCATTTCGCTTTTTATCCTTGTTTTAACCACATTATTTGTTACTTTTTATTCGGCGATCTTTTAACGTCTAACGAAGATCGCCTAGCTACTAGGCTATATTAATATTTCTTAGTTTGATTTAGCAAACAGCAAGTGCAAAACGAAAAAGTGGATAAACTTATGCCATGTCGTGGATCGGTGGGAGCTAAGGCTGAGCAGGATACGGGAAGGGATCATCGTGGAAAGGGATAAGGAAGCAACGTGGAGCGTGGATGCGCTATGTGTGATAGAATACAGATCAAGCTGATTTGAAGGTTTTGACTATAAGTGACATAGTTATATAGAAACATTTGCGTGTGGTTCATTGTGCGGACGGCACACTTCACGCGTTGATGGAAAGCAATATTTTTCGCCCGTTTTTCCTCCTCCCTATCTCTCTCTCTCTCTATTCGGGAT]
consensusID : consensus_7394#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 934 fasta sequence
[CCGCGGACGCGTGGGTGCTGATCCAGCAGCACAACCTTACCTACCCGAACATCTACGAGAAGCTGTACTCGATGTTCGAGCCGGAAATTTTCCACACCAAATTCAAGGCCCGGCTGTTCTATCTGGCCGACATCTTCCTTAGCTCTAGTCATCTGCCGGAGGGTTTGGTGGCCGCGTTTGTGAAGCGGCTGGCACGGCTGTCGCTGATCGCACCACCGCAGGATATTGTCATCATACTGCGCTTCATCGGCAACCTGATCCTGCGCCATCCGGCCCTGAAGCGGCTGATCTTTCATCCGACCGGCGGCGAGGCGTCGAGCGATCCGTACGTGATGGAGGAGCGCGACCCGATGAAATCGAAAGCGCTCGAAAGCTCGCTGTGGGAGATTGCGGCCCTGCAAAACCACGTACTGCCATCGGTCGCTTCGGCGGCACGCTTCATCTCGAATCCACTTCCAAGCGTCGAATGGGACCTGTCCGAGGTGCTAGAGATTAGTGAGAACGATATTTTCCACAAAGAAATGATGTCGAAAACGCAGGATTTCTTTGTTAATATCGATCGTCCAACGGGTATGTTCGGATACTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAAAGCGTAGCTGTTCACGTTCGATAATGGGTGAGTTTGCTGCGTTCGGCGAAACAACGTCTGTCGCGCGGTGATATGTCCTACCTATACTTTCCAATGCTGCGTCGTCCTGGTCGTTCTCATTTTTCGGATATGAGCAGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTGCTTACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACCGCGAGTCAAACCCATTTCGTCATTGGATGAACGCTAGCGCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCTTTT]
[+] EMBL BM577728 [CCGCGGACGCGTGGGTGCTGATCCAGCAGCACAACCTTACCTACCCGAACATCTACGAGAAGCTGTACTCGATGTTCGAGCCGGAAATTTTCCACACCAAATTCAAGGCCCGGCTGTTCTATCTGGCCGACATCTTCCTTAGCTCTAGTCATCTGCCGGAGGGTTTGGTGGCCGCGTTTGTGAAGCGGCTGGCACGGCTGTCGCTGATCGCACCACCGCAGGATATTGTCATCATACTGCGCTTCATCGGCAACCTGATCCTGCGCCATCCGGCCCTGAAGCGGCTGATCTTTCATCCGACCGGCGGCGAGGCGTCGAGCGATCCGTACGTGATGGAGGAGCGCGACCCGATGAAATCGAAAGCGCTCGAAAGCTCGCTGTGGGAGATTGCGGC ]
[+] EMBL BM641036 [ ccgGAGGCGTCGAGCGATCCGTACGTGATGGAGGAGCGCGACCCGATGAAATCGAAAGCGCTCGAAAGCTCGCTGTGGGAGATTGCGGCCCTGCAAAACCACGTACTGCCATCGGTCGCTTCGGCGGCACGCTTCATCTCGAATCCACTTCCAAGCGTCGAATGGGACCTGTCCGAGGTGCTAGAGATTAGTGAGAACGATATTTTCCACAAAGAAATGATGTCGAAAACGCAGGATTTCTTTGTTAATATCGATCGTCCAACGGGTATGTTCGGATACTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAAAGCGTAGCTGTTCACGTTCGATAATGGGTGAGTTTGCTGCGTTCGGCGAAACAACGTCTGTCGCGCGGTGATATGTCCTACCTATACTTTCCAATGCTGCGTCGTCCTGGTCGTTCTCATTTTTCGGATATGAGCAGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTGCTTACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACCGCGAGTCAAACCCATTTCGTCATTGGATGAACGCTAGCGCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCTTTT]
consensusID : consensus_7394#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 295 fasta sequence
[CTAGCCGAATTCGGCACGAGGCCTGATCCTGCGCCATCCGGCCCTGAAGCGGCTGATCTTTCACCCGACCGGGCGNNGAGGCGTCGAGNGATCCGTANCGTGATGGAGGAGNCGCGAACCCGATGAAATCGAAAGCGCTCGAAAGNCTCGNCTNNGGGAGANTTGNCGGNCCCTGGCAAAAACCNCNNAACTNNCATCGGNTCGCTTCGGNCGNNAACGACTTCNTCTCGAAATCCANCTTCCCNANGCNGNTCCAAATGGGGAACCCTGNTCCGAGGGTGCCTAGANGAATTAG]
[+] EMBL BX629215 [CTAGCCGAATTCGGCACGAGGCCTGATCCTGCGCCATCCGGCCCTGAAGCGGCTGATCTTTCACCCGACCGGGCGNNGAGGCGTCGAGNGATCCGTANCGTGATGGAGGAGNCGCGAACCCGATGAAATCGAAAGCGCTCGAAAGNCTCGNCTNNGGGAGANTTGNCGGNCCCTGGCAAAAACCNCNNAACTNNCATCGGNTCGCTTCGGNCGNNAACGACTTCNTCTCGAAATCCANCTTCCCNANGCNGNTCCAAATGGGGAACCCTGNTCCGAGGGTGCCTAGANGAATTAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7394#1 --------------------------------------------CCGCGGACGCGTGGGT 16
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 CTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAAAGCGTAGCTGTTCACGT 60
consensus_7394#1 GCTGATCCAGCAGCACAACCTTACCTACCCGAAC----ATCTACGAGAAGCTGTACTCGA 72
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 TCGATAATGGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTG 120
consensus_7394#1 TGTTCGAGCCGGAAATTTTCCACACCAAATTCAAGGCCCGGCTGTTCTATCTGGCCGACA 132
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 CTTACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACC--GCGAGGCAAACCCATT 178
consensus_7394#1 TCTTCCTTAGCTCTAGTCATCTGCCGGAGGGTTTGGTGGCCGCGTTTGTGAAGCGGCTGG 192
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 TCGTCATTGGATGAACGCTAGCGCTGAAAGAGAAGATGGCATCTTATTTATTTGAATTCT 238
consensus_7394#1 CACGGCTGTCGCTGATCGCACCACCGCAGGATATTGTCATCATACTGCGCTTCATCGGC- 251
consensus_7394#2 ----------------------------------------CTAGCCGAATTCGGCACGA- 19
consensus_7394#0 TTTATCAGCACCGTATCTGGGTACCACAACTTAACGCTAATGTGTGTTATCTTGCGGGAC 298
*
consensus_7394#1 AACCTGATCCTGCGCCATC------CGGCCCTGAAGCGGCTGATCTTTCATCCGACCGG- 304
consensus_7394#2 GGCCTGATCCTGCGCCATC------CGGCCCTGAAGCGGCTGATCTTTCACCCGACCGGG 73
consensus_7394#0 GGTGTATTTGTGTGAAACCGGAGTACGGCAGTAAAAGGGGAGACTTGCTCCACAGCAAGA 358
* * ** * * * **** * ** ** ** * * * *
consensus_7394#1 CGGCGAGGCGTCGAGC--GATCCGTAC-GTGATGGAGGAGC--GCGA-CCCGATGAAATC 358
consensus_7394#2 CGNNGAGGCGTCGAGN--GATCCGTANCGTGATGGAGGAGNC-GCGAACCCGATGAAATC 130
consensus_7394#0 GCACTAGAGATAGTACTAGAATATTCAAATGATGCAGATGAATGCATCTTTCATGGTATC 418
** * * ** * ***** ** * ** *** ***
consensus_7394#1 GAAAGCGCTCGA-AAGCTC--GCTGTGGGAGATT--GCGGCCCT--GCAAAA-CCACGTA 410
consensus_7394#2 GAAAGCGCTCGA-AAGNCTCGNCTNNGGGAGANTTGNCGGNCCCTGGCAAAAACCNCNNA 189
consensus_7394#0 GTTTGTTCGTGTCAGGCTTCGTCAAAACTGGACCCCACAGATTTATGCACATTCCCTGTA 478
* * * * * * * ** * * *** * ** *
consensus_7394#1 -CTGCCATCGGT-CGCTTCGGCGGCACGCTTCATCTCGAATCCACTTCCAAGCGTCGAAT 468
consensus_7394#2 ACTNNCATCGGNTCGCTTCGGNCGNNAACG--ACTTCNTCTCGAAATCCANCTTCCCNAN 247
consensus_7394#0 --CGCAAAGCGTTTGTGTACGGGAATTGTAGCATTGTAAATCCGAGTATAGAGCTATAAA 536
* * * * * * ** * * *
consensus_7394#1 GGGACCTGTCCGAGGTGCTAGAGATTAGTGAGAACGATATTTTCCACAAAGAAATGATGT 528
consensus_7394#2 G----CNGNTCCAAATGGGGAACCCTGNTCCGAGGG-----TGCCTAGANGAATTAG--- 295
consensus_7394#0 TTGTCTTGTAGAGAACAAGCAAACACAACCCAGTCTAC-CACGCTAAGGAGCCACAATCA 595
* * * *
consensus_7394#1 CGAAAACGCAGGATTTCTTTGTTAATATCGATCGTCCAA--------CGGGTATGTTCGG 580
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 TTCGAAAGTGTGCATACGCAACAAACAGAAAACGTTCCTAATAATCTCGTACACAACCGT 655
consensus_7394#1 ATACTGCGGAGGTCAGGTGGCGTCTCAGTGCTGGAAGCTATTCTAAAGCGTAGCTGTTCA 640
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 ATTCTATGCAGGATTGATTTGTTTTATTTTTCTTGTACCACACGTCAGCTACACGTAAAG 715
consensus_7394#1 CGTTCGA----TAATGGGTGAGTTTGCTGCGTTCGGCGAAACAACGTCTGTCGCGCGGTG 696
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 CATTTCGCTTTTTATCCTTGTTTTAACCACATTATTTGTTACTTTTTATTCGGCGATCTT 775
consensus_7394#1 ATATGTCCTACCTATACTTTCCAATGCTGCGTCGTCCTGGTCGTTCTCATTTTTCGGATA 756
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 TTAACGTCTAACGAAGATCGCCTA-GCTACTAGGCTATATTAATATTTCTTAGTTTGATT 834
consensus_7394#1 TGAGCAGAAGTGATGCACGCTCCAAAAGGACTGTAATCGCCAAAAAGGACTCTCCTGCTT 816
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 TAGCAAACAGCAAGTGCAAAACGAAAAAGTGGATAAACTTATGCCATGTCGTGGATCGGT 894
consensus_7394#1 ACGATTCAAAGTGTGTCAACGAGGCAAGGATTAACCACCGCGAGTCAAACCCATTTCGTC 876
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 GGGAGCTAAGGC-TGAGCAGGATACGGGAAGGGATCATCGTGGAAAGGGATAAGGAAGCA 953
consensus_7394#1 ATTGGATGAACGCTAGCGCTGAAAGAGA---AGATGGCATCTTATTTATTTGAATTCTTT 933
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 ACGTGGAGCGTGGATGCGCTATGTGTGATAGAATACAGATCAAGCTGATTTGAAGGTTTT 1013
consensus_7394#1 T----------------------------------------------------------- 934
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 GACTATAAGTGACATAGTTATATAGAAACATTTGCGTGTGGTTCATTGTGCGGACGGCAC 1073
consensus_7394#1 ------------------------------------------------------------
consensus_7394#2 ------------------------------------------------------------
consensus_7394#0 ACTTCACGCGTTGATGGAAAGCAATATTTTTCGCCCGTTTTTCCTCCTCCCTATCTCTCT 1133
consensus_7394#1 -----------------
consensus_7394#2 -----------------
consensus_7394#0 CTCTCTCTATTCGGGAT 1150
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||