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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 948 fasta sequence
[TTGCCCCGAGGTTCTCGCCCTCATCTTTATCTTCCGGCCGGTGGTGGAGCAGCAGCAAACGGAGGACAGTATCATCACGCAGCCACCGTGGGAGTTGCTCAAATCGTACGACACGCTGCGCATGCCCCTGCTGGAAGGTTGCAACGATGGGGAAGGCATCTTGGCGCTGCGCAGTCTGGGCAAACGGTGGAAAGCGTTCGGTAAGGCACCGGAACGGTTTGTTCCGGTACTGCTGGGAAGATCGCCCCAGCTGGACCGTGCTGCGGTGGGTCGCGAGATCAAGCAGTTCTACTTTGGCGAACGGCCGGTAAACGACAGTACGATTGATAAGATGTGTGATGTACTGTCGGATAACACGTTCATCACCAACTCGGCGACCAGTGCGGAGTGGCTGGCCAAGTATCAACCGAATGCGCCCCACTTTCACTATCGCTTCACGTTCGATGGACGGTTCAGCCTGCTGAAGCGCATCTTCCAGCTGTCGAATGTGCCGGGAGCGTGCCACGGGGATGATACGCTGTACATGTTCAATCCGGGCTTTCTTCCCAAGCTGCCG-CGAACAGCGATGAGTGTCGGGTGCGCGATATCTTCATCGCGCTATGGACCAGTTTCGCCAAGCACGGAGATCCAACGCGTGAGGTCCCCGCCAACCTGGTGCCCGTGCGGTGGGAACCAGTTTCGAAGGTTGCACGCGACTCCGCCGACTTCAATCTCGACTGTCTCGAGATTAACACGGTGCCACGCATGGTGCGCAATCCAGGCGCCGGACGGATGCAGCTGTGGCGCGGACTGCTCAAGAAGTACCGGGCGGACTATCTGTAGGGTGCTGCAGGCAGGGATCCTAAATGCCATCAAGCCAGTGTCAACCAGTGTAACAGTGAGCTACCGAAGGAGGGGAAGGGTAGTTAGGGCGTGGTATTAACAAGCAGGTGTTAATGTTGAAGCACA]
[+] EMBL AL693441 [TTGCCCCGAGGTTCTCGCCCTCATCTTTATCTTCCGGCCGGTGGTGGAGCAGCAGCAAACGGAGGACAGTATCATCACGCAGCCACCGTGGGAGTTGCTCAAATCGTACGACACGCTGCGCATGCCCCTGCTGGAAGGTTGCAACGATGGGGAAGGCATCTTGGCGCTGCGCAGTCTGGGCAAACGGTGGAAAGCGTTCGGTAAGGCACCGGAACGGTTTGTTCCGGTACTGCTGGGAAGATCGCCCCAGCTGGACCGTGCTGCGGTGGGTCGCGAGATCAAGCAGTTCTACTTTGGCGAACGGCCGGTAAACGACAGTACGATTGATAAGATGTGTGATGTGCTGTCGGATAACACGTTCATCACCAACTCGGCGACCAGTGCGGAGTGGCTGGCCAAGTATCAACCGAATGCGCCCCACTTTCACTATCGCTTCACGTTCGATGGACGGTTCAGCCTGCTGAAGCGCATCTTCCAGCTGTCGAATGTGCCGGGAGCGTGCCACGGGGATGATACGCTGTACATGTTCAATCCGGGCTTTCTTCCCAAGCTGCCG CGAACAGCGATGAGTGTCGGGTGCGCG ]
[+] EMBL BX601712 [ TTTATCTTCCGGCCGGTGGTGGAGCAGCAGCAAACGGAGGACAGTATCATCACGCAGCCACCGTGTGAGTTGCTCAAATCGTACGACACGCTGCGCATGCCCCTGATGGAAGGGTGTAACGATGGGGAAGGCATCTTGGCGCTGCGCAGCCTGGGCAAACGGTGGAAAGCGTTCGGTAAGGCACCGGAACGGTTTGTACCGGTACTGCTGGGAAGATCGCCCCACATGGACCGTGCTGCGGTGGGTCGCGAGATCAAACAGTTCTACTTTGGCGAACGGCCGGTAAACGACCGTACGATCGATAGAATGTGTGATGTACTGTCGGATAACACGTTC ]
[+] EMBL BX616121 [ ATGTACTGTCGGATAACACGTTCATCACCAACTCGGCGACCAGTGCGGAGTGGCTGGCCAAGTATCAACCGAATGCGCCCCACTTTCACTATCGCTTCACGTTCGATGGACGGTTCAGCCTGCTGAAGCGCATCTTCCAGCTGTCGAATGTGCCGGGAGCGTGCCACGGGGATGATACGCTGTACATGTTCAATCCGGGCTTTCTTCCGAAGCTGCCGCCGAACAGCGATGAGTGTCGGGTGCGCGATATCTTCATCGCGCTATGGACCAGTTTCGCCAAGCACGGAGATCCAACGCGTGAGGTCCCCGCCAACCTGGTGCCCGTGCGGTGGGAACCAGTTTCGAAGGTTGCACGCGACTCCGCCGACTTCAATCTCGACTGTCTCGAGATTAACACGGTGCCACGCATGGTGCGCAATCCAGGCGCCGGACGGATGCAGCTGTGGCGCGGACTGCTCAAGAAGTACCGGGCGGACTATCTGTAGGGTGCTGCAGGCAGGGATCCTAAATGCCATCAAGCCAGTGTCAACCAGTGTAACAGTGAGCTACCGAAGGAGGGGAAGGGTAGTTAGGGCGTGGTATTAACAAGCAGGTGTTAATGTTGAAGCACA]
consensusID : consensus_7400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 933 fasta sequence
[CCGCTGTAGAGCCGTCGTTCACTTGCGATGCCCTCGGTCGTACTTACCCCCGTAGCGTGTCGTCACCGTAGGCACTCGGCAACGCCGGTGCTGGTGTTGATCGTGCTTGCGCTGGCGTCACTGTTAAGAAGCAAACTTTCGCATTCGGGCCTGTTCGAGGACGTAAACGTGTTGGAAGATTGCTTTCGCCGGCTCGAACGTACATACACACACACACACACACACTTACATAAACACATACACACACGCAGGTGTAGCATCACGAGTTTGCCGGCAGACAGACGGAGCAGCAGGCAGTGGAGATCATGCGCTCATAGTTTTGTCATACGTGTACTAATCGAATTTGTGCGACCATTGAAGTGAGGTGCTGCATTTGACTGGGTGGTAAATTGTTAGTACAGCTCGCGGCACGCGGACAGTAAGGGACAAGTGCTGGGCCAGGGAAGTAGAGCATGATGAAATTAAACAGACCCCGGTGGTCACCGCTGCTGTGGCGGATTGCTTTGCTGAGCGCCGTACTACTATTTCATAACCCCGTGGTACATGGAAATGACGAAATTTCCGCCGAGTCTCAGCCGGCTGGGGATGCTGAGCAGTACGAAACACCAACGGTAGACCCGAAGCGTATGTATTTGGCTGAAAATTTCGATGATCTGTTCGATGGTGCGAGTAATGCCATCGAGAACCGGTGGGTGAAGTCAAAGGCCAAGAAAGACGACGCTGCCGAAGAGGTGGCCAAATACGACGGCGAATGGGCGGTCGAGCAGCCGCAGCGGCCGATTCTATCGAACGATTATGGGTTGGTGCTGAAATCGAAAGCGAAGCATGCTGCGATTGCTTCGCCTTTGCTGCTGAACCGACCATTCGTGTTCGAGGACAAGCCGCTCGTGGTACAGTACGAGGTCAACTTGCAGGAGGGCCAGGAATGCGGCG]
[+] EMBL AGA281256 [CCGCTGTAGAGCCGTCGTTCACTTGCGATGCCCTCGGTCGTACTTACCCCCGTAGCGTGTCGTCACCGTAGGCACTCGGCAACGCCGGTGCTGGTGTTGATCGTGCTTGCGCTGGCGTCACTGTTAAGAAGCAAACTTTCGCATTCGGGCCTGTTCGAGGACGTAAACGTGTTGGAAGATTGCTTTCGCCGGCTCGAACGTACATACACACACACACACACACACTTACATAAACACATACACACACGCAGGTGTAGCATCACGAGTTTGCCGGCAGACAGACGGAGCAGCAGGCAGTGGAGATCATGCGCTCATAGTTTTGTCATACGTGTACTAATCGAATTTGTGCGACCATTGAAGTGAGGTGCTGCATTTGACTGGGTGGTAAATTGTTAGTACAGCTCGCGGCACGCGGACAGTAAGGGACAAGTGCTGGGCCAGGGAAGTAGAGCATGATGAAATTAAACAGACCCCGGTGGTCACCGCTGCTGTGGCGGATTGCTTTGCTGAGCGCCGTACTACTATTTCATAACCCCGTGGTACATGGAAATGACGAAATTTCCGCCGAGTCTCAGCCGGCTGGGGATGCTGAGCAGTACGAAACACCAACGGTAGACCCGAAGCGTATGTATTTGGCTGAAAATTTCGATGATCTGTTCGATGGTGCGAGTAATGCCATCGAGAACC ]
[+] EMBL BM618421 [ ccgGCTGGGCCAGGGAAGTAGAGCATGATGAAATTAAACAGACCCCGGTGGTCACCGCTGCTGTGGCGGATTGCTTTGCTGAGCGCCGTACTACTATTTCATAGCCCCGTGGTACATGGAAATGACGAAATTTCCACCGAGCCTCAGCCGGCTGGGGATGCTGAGCAGTACGAAACACCGACGGTAGACCCGAAGCGTATGTATTTTGCTGAACATTTCGATGATCTGTTCGATGGTGCGAGTGATGCCATCGAGAAGCGGTGGGTGAAGTCAAAGGCCAAGAAAGACGACGCTGCCGAAGAGGTGGCCAAATACGACGGCGAATGGGCGGTCGAGCAGCCGCAGCGGCCGATTCTATCGAACGATTATGGGTTGGTGCTGAAATCGAAAGCGAAGCATGCTGCGATTGCTTCGCCTTTGCTGCTGAACCGACCATTCGTGTTCGAGGACAAGCCGCTCGTGGTACAGTACGAGGTCAACTTGCAGGAGGGCCAGGAATGCGGCG]
consensusID : consensus_7400#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence
[GATTATCCTTCCCACGAAGCCCAAAAAGTGTTTGCTCCCCTATCGCGGCGCTGTGTTCGTTCCGCGCACAACGTTGATTGAAGTGCTGGGAAGCGAACGAACGGGCGTACCAGCAGAGGCTTGCTCCCCTCGACCCTAACCGGGCCAATATACACACACACACACACACACACACTTACATAAACACATACACACACGCAGTGTAGCATCACGAGTTTGCCGGCAGACAGACGGAGCAGCAGGCAGTGGAGATCATGCGCTCATAGTTTTGTCATACGTGTACTAATCGAATTTGTGCGACCATTGAAGTGAGGTGCTGCATTTGACTGGGTGGTAAATTGTTAGTACAGCTCGCGGCACGCGGACAGTAAGGGACAAGTGCTGGGCCAGGGAAGTAGAGCATGATGAAATTAAACAGACCCCGGTGGTCACCGCTGCTGTGGCGGATTGCTTTGCTGAGCGCCGTACTACTATTTCATAACCCCGTGGTACATGGAAATGACGAAATTTCCGCCGAGTCTCAGCAGCAAACGGAGGACAGTATCATCACGCAGCCACCGTGGGAGTTGCTCAAATCGTACGACACGCTGCGCATGCCCCTGATGGAAGGGTGTAACGATGGGGAAGGCATCTTGGC]
[+] EMBL BX614786 [GATTATCCTTCCCACGAAGCCCAAAAAGTGTTTGCTCCCCTATCGCGGCGCTGTGTTCGTTCCGCGCACAACGTTGATTGAAGTGCTGGGAAGCGAACGAACGGGCGTACCAGCAGAGGCTTGCTCCCCTCGACCCTAACCGGGCCAATATACACACACACACACACACACACACTTACATAAACACATACACACACGCAGTGTAGCATCACGAGTTTGCCGGCAGACAGACGGAGCAGCAGGCAGTGGAGATCATGCGCTCATAGTTTTGTCATACGTGTACTAATCGAATTTGTGCGACCATTGAAGTGAGGTGCTGCATTTGACTGGGTGGTAAATTGTTAGTACAGCTCGCGGCACGCGGACAGTAAGGGACAAGTGCTGGGCCAGGGAAGTAGAGCATGATGAAATTAAACAGACCCCGGTGGTCACCGCTGCTGTGGCGGATTGCTTTGCTGAGCGCCGTACTACTATTTCATAACCCCGTGGTACATGGAAATGACGAAATTTCCGCCGAGTCTCAGCAGCAAACGGAGGACAGTATCATCACGCAGCCACCGTGGGAGTTGCTCAAATCGTACGACACGCTGCGCATGCCCCTGATGGAAGGGTGTAACGATGGGGAAGGCATCTTGGC]
consensusID : consensus_7400#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 197 fasta sequence
[CCGTAGCGTGTCGTCACCGTAGGCACTCGGCAACGCGTGCTGGTGTTGATCGTGCTTGCGCTGGCGTCACTGTTAAGAAGCAAACTTTCGCATTCGGGCCTGTTCGAGGACGTAAACGTGTTGGAAGATTGCTTTCGCCGGCTCGAACGTACATACACACATAAACTGTTTACACACACGTATTCGGCTCAGTTTGT]
[+] EMBL AGA283292 [CCGTAGCGTGTCGTCACCGTAGGCACTCGGCAACGCGTGCTGGTGTTGATCGTGCTTGCGCTGGCGTCACTGTTAAGAAGCAAACTTTCGCATTCGGGCCTGTTCGAGGACGTAAACGTGTTGGAAGATTGCTTTCGCCGGCTCGAACGTACATACACACATAAACTGTTTACACACACGTATTCGGCTCAGTTTGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7400#1 ------------------------------------------------------------
consensus_7400#3 ------------------------------------------------------------
consensus_7400#2 ------------------------------------------------------------
consensus_7400#0 TTGCCCCGAGGTTCTCGCCCTCATCTTTATCTTCCGGCCGGTGGTGGAGCAGCAGCAAAC 60
consensus_7400#1 -----CCGCTGTAGAGCCGTCGTTCACTTGCGATGCCCTCGGTCGTACTTACCCCCGTAG 55
consensus_7400#3 ------------------------------------------------------CCGTAG 6
consensus_7400#2 -----------------------------------------------------------G 1
consensus_7400#0 GGAGGACAGTATCATCACGCAGCCACCGTGGGAGTTGCTCAAATCGTACGACACGCTGCG 120
*
consensus_7400#1 CGTGTCGTCACCGTAGGCACTCGGCAACGCCGGTGCTGGTGTTGATCGTGCTTGCGCTGG 115
consensus_7400#3 CGTGTCGTCACCGTAGGCACTCGGCAACGC--GTGCTGGTGTTGATCGTGCTTGCGCTGG 64
consensus_7400#2 ATTATCCTTCCCACGAAGCCCAAAAAGTGTTTGCTCCCCTATCG--CGGCGCTGTGTT-- 57
consensus_7400#0 CATGCCCCTGCTGGAAGGTTGCAACGATGGGGAAGGCATCTTGGCGCTGCGCAGTCTGGG 180
* * * * * * * *
consensus_7400#1 CGTCACTGTTAAGAAGCAAACTTTCGCATTCGGGCCTGTTCGAGGACGTAAACGTGTTGG 175
consensus_7400#3 CGTCACTGTTAAGAAGCAAACTTTCGCATTCGGGCCTGTTCGAGGACGTAAACGTGTTGG 124
consensus_7400#2 CGTTCCGCGCACAACGTTGATTGAAGTGCTGGGAAGCGAACGAACGGGCGTAC-CAGCAG 116
consensus_7400#0 CAAACGGTGGAAAGCGTTCGGTAAGGCACCGGAACG-GTTTGTTCCGG--TACTGCTGGG 237
* * * * * * * * * ** *
consensus_7400#1 AAGATTGCTTTCGCCGGCTCGAAC---------GTACA-TACACACACACACACACACAC 225
consensus_7400#3 AAGATTGCTTTCGCCGGCTCGAAC---------GTACA-TACACACATAAAC-----TGT 169
consensus_7400#2 AGGCTTGCTCCCCTCGACCCTAACCGGGCCAATATACA-CACACACACACACACACACAC 175
consensus_7400#0 AAGATCGCCCCAGCTGGACCGTGCTGCG-----GTGGGTCGCGAGATCAAGCAGTTCTAC 292
* * * ** * * * * * * *
consensus_7400#1 TTACATAAACACATACACACACGCAGGTGTAGCATCACGAGTTTGCCGGCAGACAGACGG 285
consensus_7400#3 TTACACACACGTATTCGGCTCAGTTTGT-------------------------------- 197
consensus_7400#2 TTACATAAACACATACACACACGCA-GTGTAGCATCACGAGTTTGCCGGCAGACAGACGG 234
consensus_7400#0 TTTGGCGAACG-GCCGGTAAACGACAGTACGAT-TGATAAGATGTGTGATGTACTGTCGG 350
** ** * **
consensus_7400#1 AGCA-GCAGGCAGTGGAGATCATGCGCTCA---TAGTTTTGTCATACGTGTACTAATCGA 341
consensus_7400#3 ------------------------------------------------------------
consensus_7400#2 AGCA-GCAGGCAGTGGAGATCATGCGCTCA---TAGTTTTGTCATACGTGTACTAATCGA 290
consensus_7400#0 ATAACACGTTCATCACCAACTCGGCGACCAGTGCGGAGTGGCTGGCCAAGTATCAACCGA 410
consensus_7400#1 ATTTGTGCGACCATTGAAGTGAGGTGCTGCATTTGACTGGGTGGT--AAATTGTT--AGT 397
consensus_7400#3 ------------------------------------------------------------
consensus_7400#2 ATTTGTGCGACCATTGAAGTGAGGTGCTGCATTTGACTGGGTGGT--AAATTGTT--AGT 346
consensus_7400#0 ATGCGCCCCAC--TTTCACTATCGCTTCACGTTCGA-TGGACGGTTCAGCCTGCTGAAGC 467
consensus_7400#1 ACAGCTCGCGGCACGCGGACA-GTAAGGGACAAGTGCTGGGCCAGGGAAGTAGAGCATGA 456
consensus_7400#3 ------------------------------------------------------------
consensus_7400#2 ACAGCTCGCGGCACGCGGACA-GTAAGGGACAAGTGCTGGGCCAGGGAAGTAGAGCATGA 405
consensus_7400#0 GCATCTTCCAGCTGTCGAATGTGCCGGGAGCGTGCCACGGGGATGATACGCTGTACATGT 527
consensus_7400#1 TGAAATTAAACAGACCCCGGTGGTCACCGCTGCTGTGGCGGATTGCTTTGCTGAGCGCCG 516
consensus_7400#3 ------------------------------------------------------------
consensus_7400#2 TGAAATTAAACAGACCCCGGTGGTCACCGCTGCTGTGGCGGATTGCTTTGCTGAGCGCCG 465
consensus_7400#0 TCAATCCGGGCTTTCTTCCCAAGCTGCCGCGAACAGCGATGAGTG-TCGGGTGCGCGATA 586
consensus_7400#1 TACT-ACTATTTCATAACCCCGTGGTACATGGAAATGACGAAATTTCCGCCGAGTCTCAG 575
consensus_7400#3 ------------------------------------------------------------
consensus_7400#2 TACT-ACTATTTCATAACCCCGTGGTACATGGAAATGACGAAATTTCCGCCGAGTCTCAG 524
consensus_7400#0 TCTTCATCGCGCTATGGACCAGTTTCGCCAAGCACGGAGATCCAACGCGTGAGGTCCCCG 646
consensus_7400#1 CCGGCTGGGGATGCTG--AGCAGTACGAAACACCAACGGTAGACCCGAAGCGTAT--GTA 631
consensus_7400#3 ------------------------------------------------------------
consensus_7400#2 CAGCAAACGGAGGACAGTATCATCACGCAGCCACCGTGGGAGTTGCTCAAATCGT--ACG 582
consensus_7400#0 CCAACCTGGTGCCCGTGCGGTGGGAACCAGTTTCGAAGGTTGCACGCGACTCCGCCGACT 706
consensus_7400#1 TTTGGCTGAAAATTTCGATGATCTG-TTCG-ATGGTGCGAGTAATGCCATCGAGAACC-- 687
consensus_7400#3 ------------------------------------------------------------
consensus_7400#2 ACACGCTGCGCATGCCCCTGATGGA-AGGGTGTAACGATGGGGAAGGCATCTTGGC---- 637
consensus_7400#0 TCAATCTCGACTGTCTCGAGATTAACACGGTGCCACGCATGGTGCGCAATCCAGGCGCCG 766
consensus_7400#1 GGTGGGTGAAGTCAAAGGCCAAGAAAGACGACGCTGCCGAAGAGGTGGCCAAATACGACG 747
consensus_7400#3 ------------------------------------------------------------
consensus_7400#2 ------------------------------------------------------------
consensus_7400#0 GACGGATGCAGCTGTGGCGCGGACTGCTCAAGAAGTACCGGGCGGACTATCTGTAGGGTG 826
consensus_7400#1 GCGAATGGGCGGTCGAGCAGCCGCAGCGGCCGATTCTATCGAACGATTATGGGTTGGTGC 807
consensus_7400#3 ------------------------------------------------------------
consensus_7400#2 ------------------------------------------------------------
consensus_7400#0 CTGCAGGCAGGGATCCTAAATGCCATCAAGCCAGTGTCAACCAGTGTAACAGTGAGCTAC 886
consensus_7400#1 TGAAATCGAAAGCGAAGCATGCTGCGATTGCTTCGCCTTTGCTGCTGAACCGACCATTCG 867
consensus_7400#3 ------------------------------------------------------------
consensus_7400#2 ------------------------------------------------------------
consensus_7400#0 CGAAGGAGGGGAAGGGTAGTTAGGGCGTGGTATTAACAAGCAGGTGTTAATGTTGAAGCA 946
consensus_7400#1 TGTTCGAGGACAAGCCGCTCGTGGTACAGTACGAGGTCAACTTGCAGGAGGGCCAGGAAT 927
consensus_7400#3 ------------------------------------------------------------
consensus_7400#2 ------------------------------------------------------------
consensus_7400#0 CA---------------------------------------------------------- 948
consensus_7400#1 GCGGCG 933
consensus_7400#3 ------
consensus_7400#2 ------
consensus_7400#0 ------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||