These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1342 fasta sequence [CACCCAAACGTTTGATGGGTGGGGAGAGCATTTGGGGCGGCAGTCTGCTGTGTAGGTGTGCGTTAGTTGCATCTGTAACAAACAATGCATACATTATTGTCCCGCTTACAGCAGGCTGTGGGCACTTTGGCACTTAAAACCATCCTATTTCGGCTGCACTTAGTTCGATTTAGTTAGCTTAAATACTAAAACATGCATTAGTGGGGGTTTGTTTTCGAGTTTTCAGCTCTTGCGCTGTGCGTTGTGTTGTGAGTGTTACGGGGAGTGTGGTTAAGTGTACTACACCTAT-CTTACACATCGATCGACGACGAAATTATGACGGAAACGAA-CACAACACCCAAGGTAGTTAAAAGTAATTAAACGAAACAAAACGAAGATTAGCTGCATTTTCGGCACTGGGGAACGAGCGAACCTGCTCGTTAGTAGTGATGAGGAGGGAAGCACGATCAGCACGAGCAGTGCAAACGTGATGGCGGTTGTAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCA-TTACAGTATGCAGCACTTTTTCCTGTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCACCACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTCGATGT-AGGGAATTTT-CAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCGCTGGTGATCGAGATCGGACTT-GTTGCCCACCATTAGCATCGGGA-ACTCGTCGCGATCCTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACGGCGAACACGAGCAGGAAGCCCTCCCCCGAACGCATGTACTGTTCGCGCATTGCACTGAACTCCTCCTGGCCGGCCGTGTCGAGTATGTCCAGCTTAGCAGGCGCATCGTCGATGACGCACTGTTTGGTGTAGGAATCTTCGATTGTAGGATCGTAGTCGGTTACAAAGTAGCTCTGAATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCACCCACAACGACCAGCTTGAAGGTCTGGGCATAGCCTGCGTGCGTTTGGTTGTAACGGGACATTCTGGAACACCCTGGCCGTGGCGGATCGGGGAAACCGAACGGGAGTGCGGGGGAAGAGGAGGAGCGATCGTGCACACCGAACTTCACAAACTCACATGCACACGCGGTGCAAACACGATCGGGCGAAGGGAATACGCGGTGCACTGGGTGAAACAATCGAAATTAAACCAAAAACCGACGGCGCGTTTACTAACCGGACGCGTGGGCGGACGCGTGGGCGG] [-] EMBL BM613502 [CACCCAAACGTTTGATGGGTGGGGAGAGCATTTGGGGCGGCAGTCTGCTGTGTAGGTGTGCGTTAGTTGCATCTGTAACAAACAATGCATACATTATTGTCCCGCTTACAGCAGGCTGTGGGCACTTTGGCACTTAAAACCATCCTATTTCGGCTGCACTTAGTTCGATTTAGTTAGCTTAAATACTAAAACATGCATTAGTGGGGGTTTGTTTTCGAGTTTTCAGCTCTTGCGCTGTGCGTTGTGTTGTGAGTGTTACGGGGAGTGTGGTTAAGTGTACTACACCTAT CTTACACATCGATCGACGACGAAATTATGACGGAAACGAA CACAACA CCAAGGTAGTTAAAAGTAATTAAACGAAACAAAACGAAGATTAGCTGCATTTTCGGCACTGGGGAACGAGCGAACCCGCTCGTTAGTAGTGATGAGGAGGGAAGCACGATCAGCACGAGCAGTGCAAACGTGATGGCGGTTGTAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCA TTACAGTATGCAGCACTTTTTCCTGTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCACCACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTCGATGT AGGGAATTTT CAGCTGCCGGCTCAACTGTTGCGCCTCCcgg ] [-] EMBL BM581234 [ TTCCAGCTCTTGCGCTGTGCGTTGTGTTGTGAGTGTTACCGAGAGTGTGGTTAAGTGTACTACACCTATCCTTACACATCGATCGACGACGAAATTATGACGGAAACGAACCACAACACCCAAGGTAGTTAAAAGTAATTAAACGAAACAAAACGAAGATTAGCTGCATTTTCGGCACTGGGGAACGAGCGAACCTGCTCGTTAGTAGTGATGAGGAGGGAAGCACGATCAGCACGAGCAGTGCAAACGTGATGGCGGTTGTAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCATTTACAGTATGCAGCACTTTTTCCTGTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCACCACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTCGATGT AGGGAATTTT CAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGAAACGACGCGCTGGTGATCGAGATCGGACTT GTTGCCCACCATTAGCATCGGGA ACTCGTCGCGATCCTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACAGCGAACACGAGCAGGAAGCCgg ] [-] EMBL AL931307 [ TCGACGACGAAATTATGACGG ACCGAA CACAACACCCAAGGTAGTTAAAAGTAATT AACGANCAAAAACGAAGATTAGCTGCATTTTCGGCACTGGGGAACGAGCGAACCTGCTCGTTAGTAGTGATGAGGAGGGAAGCACGATCAGCACGAGCAGTGCAAACGTGATGGCGGTTGTAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCA TTACAGTATGCAGCACTTTTTCCTGTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCACCACCCGCACGAGCTCGTGAAACGCCTGGTCGACG TAATGCGCAGCTTCGCGCTGCACTCGATGTAAGGGAATTTTCCAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGAAACGACGCGCTGGTGATCGAGATCGGACTTGGTTGCCCACCATTAGCATCGGAANCCTCGg ] [-] EMBL BM577151 [ AGCTTCGCGCTGCACTCGATGT AGGGAATTTT CAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCGCTGGTGATCGAGATCAGACTT GTTGCCCACCATTAGCATCGGGA ACTCGTCGCGATCTTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACGGCGAACACGAGCAGGAAGCCCTCCCCCGAACGCATGTACTGTTCGCGCATTGCACTGAACTCCTCCTGGCCGGCCGTGTCGAGTATGTCCAGCTTAGCAGGCGCATCGTCGATGACGCACTGTTTGGTGTAGGAATCTTCGATTGTAGGATCGTAGTCGGTTACAAAGTAGCTCTGAATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCACCCACAACGACCAGCTTGAAGGTCTGGGCATAGCCTGCGTGCGTTTGGTTGTAACGGGACATTCTGGAACACCCTGGCCGTGGCGGATCGGGGAAACCGAACGGGAGTGCGGGGGAAGAGGAGGAGCGATCGTGCACACCGAACTTCACAAACTCACATGCACACGCGGTGCAAACACGATCGGGCGAAGGGAATACGCGGTGCACTGGGTGAAACAATCGAAATTAAACCAAAAACCGACGGCGCGTTTACTAACCGGACGCGTGGGCGGACGCGTGGGCGG] [-] EMBL BM617108 [ GCTTCGCGCTGCACTCGATGT AGGGAATTTT CAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCGCTGGTGATCGAGATCAGACTT GTTGCCCACCATTAGCATCGGGA ACTCGTCGCGATCTTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACGGCGAACACGAGCAGGAAGCCCTCCCCCGAACGCATGTACTGTTCGCGCATTGCACTGAACTCCTCCTGGCCGGCCGTGTCGAGTATGTCCAGCTTAGCAGGCGCATCGTCGATGACGCACTGTTTGGTGTAGGAATCTTCGATTGTAGGATCGTAGTCGGTTACAAAGTAGCTCTGAATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCACCCACAACGACCAGCTTGAAGGTCTGGGCATAGCCTGCGTGCGTTTGGTTGTAACGGGACATTCTGGAACACCCTGGCCGTGGCGGATCGGGGAAACCGAACGGGAGTGCGGGGGAAGAGGAGGAGCGATCGTGCACACCGAACTTCACAAACTCACATGCACACGCGGTGCAAACACGATCGGGCGAAGGGAATACGCGGTGCACTGGGTGAAACAATCGAAATTAAACCAAAAACCGACGGCGCGg ] [-] EMBL BM604190 [ AATTTT CAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCGCTGGTGATCGAGATCGGACTT GTTGCCCACCATTAGCATCGGGA ACTCGTCGCGATCCTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACGGCGAACACAAGCAGGAAGCCCTCGCCCGAACGCATGTACTGTTCGCGCATTGCACTGAACTCCTCCTGGCCGGCCGTGTCGAGTATGTCCAGCTTAGCAGGCGCATCGTCGATGACGCACTGTTTGGTGTAGGAATCTTCGATTGTAGGATCGTAGTCGGTTACAAAGTAGCTCTGAATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCACCCACAACGACCAGCTTGAAGGTCTGGGCATAGCCTGCGTGCGTTTGGTTGTAACGGGACATTCTGGAACACCCTGGCCGTGGCGGATCGAGGAAACCGAACGGGAGTGCGAGGGAAGAGGAGGAGCGATCGTGCACACCGAACTTCACAAACTCACATGCACACGCGGTGCAAACACGATCGGGCGAAGGGAATACGCGGTGCACTGGGTGAAACAATCGAAATTAAACCAAAAACCGACGGCGCGTTTcgg ] consensusID : consensus_7406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence [GGCAAGAATCGGCACGATGGAGCACGAGCAGTGCAAACGTGATGGCGGTTGTAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCATTACAGTATGCAGCACTTTTTCCTGTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCACCACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTCGATGTAGGGAATTTTCAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCGCTGGTGATCGAGATCGGACTTGTTGCCCACCATTAGCATCGGGAACTCGTCGCGATCCTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACGGCGAACACAAGCAGGAAGCCCTCGCCCGAACGCATGTACTGTTCGCGCATTGCACTGAACTCCTCCTGGCCGGCCGTGTCGAGTNNTGTCCAGCTTAGCAGGCGCATCGTCGATGACGCACTGTTTAGGTGTAGGAATCTTCGATTGTAGGATCGTAGGTCGGTTACAAAGTAGCTCTGAATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCAACCAGCAACGACCAGCTTGGANAGGTCTGGGCATAGCCTGCGTGCGTTAGGTTCGTAACGGGACATTCTGGAACCAACCCCTTGGGCCGTGGCCGGATCGAAGGGAAACCGGAACGGGAGTTGCGCACGGAACGAAGGAGGAANGCGATCGTGCACACCGGAACGNTTCCANCAAGANCTTCCCNT] [+] EMBL BX468146 [GGCAAGAATCGGCACGATGGAGCACGAGCAGTGCAAACGTGATGGCGGTTGTAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCATTACAGTATGCAGCACTTTTTCCTGTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCACCACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTCGATGTAGGGAATTTTCAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCGCTGGTGATCGAGATCGGACTTGTTGCCCACCATTAGCATCGGGAACTCGTCGCGATCCTTCACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCACGGCGAACACAAGCAGGAAGCCCTCGCCCGAACGCATGTACTGTTCGCGCATTGCACTGAACTCCTCCTGGCCGGCCGTGTCGAGTNNTGTCCAGCTTAGCAGGCGCATCGTCGATGACGCACTGTTTAGGTGTAGGAATCTTCGATTGTAGGATCGTAGGTCGGTTACAAAGTAGCTCTGAATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCAACCAGCAACGACCAGCTTGGANAGGTCTGGGCATAGCCTGCGTGCGTTAGGTTCGTAACGGGACATTCTGGAACCAACCCCTTGGGCCGTGGCCGGATCGAAGGGAAACCGGAACGGGAGTTGCGCACGGAACGAAGGAGGAANGCGATCGTGCACACCGGAACGNTTCCANCAAGANCTTCCCNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7406#0 CACCCAAACGTTTGATGGGTGGGGAGAGCATTTGGGGCGGCAGTCTGCTGTGTAGGTGTG 60 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 CGTTAGTTGCATCTGTAACAAACAATGCATACATTATTGTCCCGCTTACAGCAGGCTGTG 120 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 GGCACTTTGGCACTTAAAACCATCCTATTTCGGCTGCACTTAGTTCGATTTAGTTAGCTT 180 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 AAATACTAAAACATGCATTAGTGGGGGTTTGTTTTCGAGTTTTCAGCTCTTGCGCTGTGC 240 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 GTTGTGTTGTGAGTGTTACGGGGAGTGTGGTTAAGTGTACTACACCTATCTTACACATCG 300 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 ATCGACGACGAAATTATGACGGAAACGAACACAACACCCAAGGTAGTTAAAAGTAATTAA 360 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 ACGAAACAAAACGAAGATTAGCTGCATTTTCGGCACTGGGGAACGAGCGAACCTGCTCGT 420 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 TAGTAGTGATGAGGAGGGAAGCACGATC-AGCACGAGCAGTGCAAACGTGATGGCGGTTG 479 consensus_7406#1 -------GGCAAGAATCG--GCACGATGGAGCACGAGCAGTGCAAACGTGATGGCGGTTG 51 * ** * * ******* ******************************* consensus_7406#0 TAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCATTACAGTATGCAGCACTTTTTCCT 539 consensus_7406#1 TAAACGGGAAGGAATTTGTCAGTAAGAACCACTCCATTACAGTATGCAGCACTTTTTCCT 111 ************************************************************ consensus_7406#0 GTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCAC 599 consensus_7406#1 GTTCTTTCGCTTGCCCTTCTCATCCACCAGCGGTCGCTCGGAAAGCTGAAACTTTCGCAC 171 ************************************************************ consensus_7406#0 CACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTC 659 consensus_7406#1 CACCCGCACGAGCTCGTGAAACGCCTGGTCGACGTTAATGCGCAGCTTCGCGCTGCACTC 231 ************************************************************ consensus_7406#0 GATGTAGGGAATTTTCAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCG 719 consensus_7406#1 GATGTAGGGAATTTTCAGCTGCCGGCTCAACTGTTGCGCCTCCTCCAGCGATACGACGCG 291 ************************************************************ consensus_7406#0 CTGGTGATCGAGATCGGACTTGTTGCCCACCATTAGCATCGGGAACTCGTCGCGATCCTT 779 consensus_7406#1 CTGGTGATCGAGATCGGACTTGTTGCCCACCATTAGCATCGGGAACTCGTCGCGATCCTT 351 ************************************************************ consensus_7406#0 CACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCAC 839 consensus_7406#1 CACGCGCAGTATTTGCTTGTGAAATTTGTATATCTCGTCGAAGCTCGCGTGATCCGTCAC 411 ************************************************************ consensus_7406#0 GGCGAACACGAGCAGGAAGCCCTCCCCCGAACGCATGTACTGTTCGCGCATTGCACTGAA 899 consensus_7406#1 GGCGAACACAAGCAGGAAGCCCTCGCCCGAACGCATGTACTGTTCGCGCATTGCACTGAA 471 ********* ************** *********************************** consensus_7406#0 CTCCTCCTGGCCGGCCGTGTCGAGTAT-GTCCAGCTTAGCAGGCGCATCGTCGATGACGC 958 consensus_7406#1 CTCCTCCTGGCCGGCCGTGTCGAGTNNTGTCCAGCTTAGCAGGCGCATCGTCGATGACGC 531 ************************* ******************************** consensus_7406#0 ACTGTTT-GGTGTAGGAATCTTCGATTGTAGGATCGTAG-TCGGTTACAAAGTAGCTCTG 1016 consensus_7406#1 ACTGTTTAGGTGTAGGAATCTTCGATTGTAGGATCGTAGGTCGGTTACAAAGTAGCTCTG 591 ******* ******************************* ******************** consensus_7406#0 AATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCACCCA-CAACGACCAGCT 1075 consensus_7406#1 AATGAATTGGATGGTGATAGCGGACTTGCCAACACCTCCTCCAACCAGCAACGACCAGCT 651 ******************************************* *** ************ consensus_7406#0 TG--AAGGTCTGGGCATAGCCTGCGTGCGTTTGGTT-GTAACGGGACATTCTGGAAC--A 1130 consensus_7406#1 TGGANAGGTCTGGGCATAGCCTGCGTGCGTTAGGTTCGTAACGGGACATTCTGGAACCAA 711 ** ************************** **** ******************** * consensus_7406#0 CCCT---GGCCGTGGC-GGATCG--GGGAAACCG-AACGGGAGT---GCGGGG---GAAG 1177 consensus_7406#1 CCCCTTGGGCCGTGGCCGGATCGAAGGGAAACCGGAACGGGAGTTGCGCACGGAACGAAG 771 *** ********* ****** ********* ********* ** ** **** consensus_7406#0 AGGAGGAGCGATCGTGCACACCGAACTTCACAAACTCACATGCACACGCGGTGCAAACAC 1237 consensus_7406#1 GAGGAANGCGATCGTGCACACCGGAACGNTTCCANCAAGANCTTCCCNT----------- 820 * **************** * * * * * * consensus_7406#0 GATCGGGCGAAGGGAATACGCGGTGCACTGGGTGAAACAATCGAAATTAAACCAAAAACC 1297 consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 GACGGCGCGTTTACTAACCGGACGCGTGGGCGGACGCGTGGGCGG 1342 consensus_7406#1 --------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||