These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 794 fasta sequence [CCGGCCTTCCTCACGCATACCTCTTATCATCGCATCCCAATCGCAGTTGCACAGAAGGTGCTTCTACGATCATTCAAGCTCACTCTCAGAAAACGTATAGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTGCGCCTTTTTACAG-AAAAAGTGGTAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGGTTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAGCTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTACGCAGCAGAAGCCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATCGTGCGTTTTCTCGGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTTCCCGGGT] [+] EMBL BM656103 [CCGGCCTTCCTCACGCATACCTCTTATCATCGCATCCCAATCGCAGTTGCACAGAAGGTGCTTCTACGATCATTCAAGCTCACTCTCATAAAACGTATAGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGGGTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACA ] [+] EMBL CNS08PRU [ CGAATCCCAATCGCAGTTGTACAGAAGGTGCTTCTACGATCATTCAAGCTCACTCTCAGAAAACGTATAGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTGTTCCTTTTTACAG AAAAAGTGGTAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGGTTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAGCTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTACGCAGCAGAAGCCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATCGTGCGTTTTCTCGGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCAAATGTTCCCGGGT] [+] EMBL BM614203 [ ccgCAGAAGGTGCTTCTACGATCATTCAAGCTCACTCTCAGAAAACGTATAGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTGTTCCTTTTTACAG AAAAAGTGGTAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGGTTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAGCTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTACGCAGCAGAAGCCGTTCATCTGTCAACAGTTCCGA ] [+] EMBL BM639539 [ cCGCCTTTTTACAG AAAAAGTGGTAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGGTTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCAACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAGCTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTACGCAGCAGAAGCCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATCGTGCGTTTTCTCGGCAG ] consensusID : consensus_7413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [TGCTTCTACGATCATTCAAGCTCACTCTCATAAAACGTATAGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGGGTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTACGCAGCAGAAACCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATCGTGCGTTTTCTCGGTAGAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGTTTT] [+] EMBL CNS08EDR [TGCTTCTACGATCATTCAAGCTCACTCTCATAAAACGTATAGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGGGTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTACGCAGCAGAAACCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATCGTGCGTTTTCTCGGTAGAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGTTTT] consensusID : consensus_7413#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [CCGCCCACGCGTCCGCTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGGGTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCTAATGTACGCAGCAGAAACCGTTCATCTGTCAACAGTTCCGAA] [+] EMBL BM586388 [CCGCCCACGCGTCCGCTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGGGTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTGGAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGTTGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGCCCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCTAATGTACGCAGCAGAAACCGTTCATCTGTCAACAGTTCCGAA] consensusID : consensus_7413#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 401 fasta sequence [CGACCCACGCGTCCGGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTGTTCCTTTTTACAGAAAAAGTGGTAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGGTTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCGGAGCGA] [+] EMBL BM654587 [CGACCCACGCGTCCGGTCTTTAGAAGTTTGTGTGGTTTTCTGTACTGTTATACTGTGTTCCTTTTTACAGAAAAAGTGGTAAACCATTTTTAAAATGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGGTTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGTTCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTGCCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAGCCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCGGAGCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7413#0 CCGGCCTTCCTCACGCATACCTCTTATCATCGCATCCCAATCGCAGTTGCACAGAAGGTG 60 consensus_7413#3 ------------------------------------------------------------ consensus_7413#1 ----------------------------------------------------------TG 2 consensus_7413#2 ------------------------------------------------------------ consensus_7413#0 CTTCTACGATCATTCAAGCTCACTCTCAGAAAACGTATAGTCTTTAGAAGTTTGTGTGGT 120 consensus_7413#3 ------------------------CGACCCACGCGTCCGGTCTTTAGAAGTTTGTGTGGT 36 consensus_7413#1 CTTCTACGATCATTCAAGCTCACTCTCATAAAACGTATAGTCTTTAGAAGTTTGTGTGGT 62 consensus_7413#2 ---------------------------------------------------CCGCCCACG 9 * consensus_7413#0 TTTCTGTACTGTTATACTGTGCGCCTTTTTACAGAAAAA-GTGGTAAACCATTTTTAAAA 179 consensus_7413#3 TTTCTGTACTGTTATACTGTGTTCCTTTTTACAGAAAAA-GTGGTAAACCATTTTTAAAA 95 consensus_7413#1 TTTCTGTACTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAA 122 consensus_7413#2 CGTCCG--CTGTTATACTGTACGCCTTTTCAAGGAAAAAAGTGATAAACCATTTTTAAAA 67 ** * ************ ****** * ****** *** **************** consensus_7413#0 TGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGG 239 consensus_7413#3 TGAATTTAATGATCACAATTCTAATTGCTGTCATCACAGTGGTTCGTGGTGACCTATCGG 155 consensus_7413#1 TGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGG 182 consensus_7413#2 TGAATTTAATGATCACAATTCTAATTACTGTCATCACAGTGGTTCGTGGTGATCTATCGG 127 ************************** ************************* ******* consensus_7413#0 TTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGT 299 consensus_7413#3 TTCCTAAAACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGT 215 consensus_7413#1 GTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGT 242 consensus_7413#2 GTCCACATACTGTGGATGATATTCTTCAACAAAACCCATGCCTTTGCCCATGCAAACCGT 187 *** * **************************************************** consensus_7413#0 TCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTG 359 consensus_7413#3 TCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTG 275 consensus_7413#1 TCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTG 302 consensus_7413#2 TCGAGGAGAAAGAATACTTCATTCCCATCAGTCGGACGAGCGACTGGTTCGGTGCCGTTG 247 ************************************************************ consensus_7413#0 CCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAG 419 consensus_7413#3 CCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAG 335 consensus_7413#1 CCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAG 362 consensus_7413#2 CCTACTGCCACAGCGTTGGCATGGAGCTGGCCGAGGTGCTGAACGAAGACGAAGCACGAG 307 ************************************************************ consensus_7413#0 CCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCG 479 consensus_7413#3 CCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATCG 395 consensus_7413#1 CCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTG 422 consensus_7413#2 CCATGGGCGAAGTGATCGCGGAGGAAGAATCCGACTCGGATGACGAGTTTTACTGGATTG 367 ********************************************************** * consensus_7413#0 GAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAGCTGGACGGCCAGTGT 539 consensus_7413#3 GAGCGA------------------------------------------------------ 401 consensus_7413#1 GAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGT 482 consensus_7413#2 GAGCGAATGATCTCGGCGTGCAGGGTACTTACCGGTGGGCATTAACTGGACGGCCAGTGT 427 ****** consensus_7413#0 TGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGC 599 consensus_7413#3 ------------------------------------------------------------ consensus_7413#1 TGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGC 542 consensus_7413#2 TGTACAGCCAATGGGCTGCAGGTGAACCGAACCATGCTCGCGGTGAGAATGGCCAACAGC 487 consensus_7413#0 CCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTA 659 consensus_7413#3 ------------------------------------------------------------ consensus_7413#1 CCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCCAATGTA 602 consensus_7413#2 CCGCCGAACGATGCGTCGCTGTTGCGATGGACAAGTACGAGTGGAACGATTTCTAATGTA 547 consensus_7413#0 CGCAGCAGAAGCCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATC 719 consensus_7413#3 ------------------------------------------------------------ consensus_7413#1 CGCAGCAGAAACCGTTCATCTGTCAACAGTTCCGAAAACATTGAAAAGTGTGAATAAATC 662 consensus_7413#2 CGCAGCAGAAACCGTTCATCTGTCAACAGTTCCGAA------------------------ 583 consensus_7413#0 GTGCGTTTTCTCGGCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGC 779 consensus_7413#3 ------------------------------------------------------------ consensus_7413#1 GTGCGTTTTCTCGGTAGAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGAGTTTT- 721 consensus_7413#2 ------------------------------------------------------------ consensus_7413#0 CAAATGTTCCCGGGT 794 consensus_7413#3 --------------- consensus_7413#1 --------------- consensus_7413#2 --------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||