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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7424#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 925 fasta sequence
[CCGCGAACTCCAAGGAGTGCAAGGCTGAGCTGCGCGAGCACGAGAATACGGTAGAGTGCATTGCCTGGGCCCCGGAATCGGCAGCAGCGGCTATAAACGAGGCAGCCGGAGCAGACAACAAGAAGGGTGCACACCAAGGCCCATTCCTGGCATCGGGATCGAGAGACAAAACGATCAGGATTTGGGACGTCAGCTCCGGCTTGTGCCTGTTTACGCTGGCCGGCCACGACAATTGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGC-TAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATG-TGTGTGTGGGTCCAACGGGAGACTCATTGGCGC-TTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGTCTGGAAGGATGCGTGGATT-GGC-AAAGCAGGA-GGA-CCCAAGG-ACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCATCATCAT---CATCATC---ATCGTGGATACGTTTTCATTGCGATG--------TGTGCGCATGGTTTGTGTTCAGTTTGTGTTGCCGTCCTCTGTTTAAGGTGGTGTAGAAAGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAAACTGTGAAAGATAGATGATACATGATAACAAGCGAGAGG]
[+] EMBL BM647180 [CCGCGAACTCCAAGGAGTGCAAGGCTGAGCTGCGCGAGCACGAGAATACGGTAGAGTGCATTGCCTGGGCCCCGGAATCGGCAGCAGCGGCTATAAACGAGGCAGCCGGAGCAGACAACAAGAAGGGTGCACACCAAGGCCCATTCCTGGCATCGGGATCGAGAGACAAAACGATCAGGATTTGGGACGTCAGCTCCGGCTTGTGCCTGTTTACGCTGGCCGGCCACGACAATTGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGCTTAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATGATGTGTGTGGGTCCAACGGGAGACTCATTGGCGCTTTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGTCTGGAAGGATGCGTGGATT GGC AAAGCAGGA GGA CCCAAGG ACC ]
[+] EMBL BM618372 [ ccgACAAGAAGGGTGCACACCAAGGCCCATTCCTGGCATCGGGATCGAGAGACAAAACGATCAGGATTTGGGACGTCAGCTCCGGCTTGTGCCTGTTTACGCTGGCCGGCCACGACAATTGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGC TAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATG TGTGTGTGGGTCCAACGGGAGACTCATTGGCGC TTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGTCTGGAAGGATGCGTGGATT GGC AAAGCAGGA GGA CCCAAGG ACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCACCATCAT ]
[+] EMBL BM593929 [ ccgGGATTTGGGACGTCAGCTCCGGCTTGTGCCTGTTTACGCTGGCCGGCCACGACAATTGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGC TAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATG TGTGTGTGGGTCCAACGGGAGACTCATTGGCGC TTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGCCTGGAAGGATCCGTGGATT GGC AAAGCAGGA GGA CCCACGG ACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCATCATCATCAGCATCATCCTTATCGTGGATACGTTTTCATTGCGATGTGTGCACCTGTGCGCATGGTTTGTGTTCAGTTTGTGTTGCCGTCCTCTGTTTAAGGTGGTGTAGAAAGGGGGT ]
[+] EMBL BM639974 [ ccgTGTTTACGCTGGCCGGCCACGACAATTGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGC TAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATG TGTGTGTGGGTCCAACGGGAGACTCATTGGCGC TTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGCCTGGAAGGATCCGTGGATT GGC AAAGCAGGA GGA CCCACGG ACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCATCATCATCAGCATCATCCTTATCGTGGATACGTTTTCATTGCGATGTGTGCACCTGTGCGCATGGTTTGTGTTCAGTTTGTGTTGCCGTCCTCTGTTTAAGGTGGTGTAGAAAGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAAACT ]
[+] EMBL BM630619 [ ccgCGCTGGCCGGCCACGACAATTGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGC TAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATG TGTGTGTGGGTCCAACGGGAGACTCATTGGCGC TTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGCCTGGAAGGATCCGTGGATTGGGCAAAAGCAGGAGGGACCCCACGGTACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCATC ]
[+] EMBL BM608442 [ ccgGGGTGCGTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGCTACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATTTCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACACGACGGTTAAAGTTTGGGAGTGCCGC TAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGTACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTACTTTGTGTGTGTGTGTATG TGTGTGTGGGTCCAACGGGAGACTCATTGGCGC TTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGTCTGGAAGGATGCGTGGATT GGC AAAGCAGGA GGA CCCAAGG ACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCACCATCAT CATCATC ATCGTGGATACGTTTTCATTGCGATG TGTGCGCATGGTTTGTGTTCAGTTTGTGTTGTCGTCCTCTGTTTAGGGTGGTGTAGCAAGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAAACTGTGAAAGATAGATGATACATGATAACAAGCGAGAGG]
consensusID : consensus_7424#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[CCGCCCACGCGTCCGCGGGAGACTCATTGGCGCTTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGCCTGGAAGGATCCGTGGATTGGCAAAGCAGGAGGACCCACGGACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCATCATCATCAGCATCATCCTTATCGTGGATACGTTTTCATTGCGATGTGTGCACCTGTGCGCATGGTTTGTGTTCAGTTTGTGTTGCCGTCCTCTGTTTAGGGTGGTGTAGAAGGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAAACTGTGAAAGATAGATGATACATGATAACAAGCGAGAGGGAAAGAGGAGAAAGGGATGTTTTAGTTCAATATTAGTTTACGTTTTGTTCTATTTTACTCATATTGATCCAATGAATATTGTCAGTGGCGGTACGGATGTTTAGTAACATACACACACAAACTGTCGTTAGCCCAACCTTTAGCGCTGGTTCATGCGTGTTCCTTCGTGCTCCTCCTTCTTAGAGCCGCTGGCTGTTAAACTCTCCAGCAAACCGTTAGCTTTTTCTCTGGGGTTAGACAAACTGGTTAGAATTGTGAAAACGAGATCATGTTTGCAATTATTGCTAAATCAAAATGCTACACTAATAGAGTGGATACACCCAACAATTA]
[+] EMBL BM636419 [CCGCCCACGCGTCCGCGGGAGACTCATTGGCGCTTTCTGTTTTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTGTGGGCCTGGAAGGATCCGTGGATTGGCAAAGCAGGAGGACCCACGGACCACAGTTATCCAGCATCGGCAAGCAGGCACCGTCATCACCACCATCATCATCAGCATCATCCTTATCGTGGATACGTTTTCATTGCGATGTGTGCACCTGTGCGCATGGTTTGTGTTCAGTTTGTGTTGCCGTCCTCTGTTTAGGGTGGTGTAGAAGGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAAACTGTGAAAGATAGATGATACATGATAACAAGCGAGAGGGAAAGAGGAGAAAGGGATGTTTTAGTTCAATATTAGTTTACGTTTTGTTCTATTTTACTCATATTGATCCAATGAATATTGTCAGTGGCGGTACGGATGTTTAGTAACATACACACACAAACTGTCGTTAGCCCAACCTTTAGCGCTGGTTCATGCGTGTTCCTTCGTGCTCCTCCTTCTTAGAGCCGCTGGCTGTTAAACTCTCCAGCAAACCGTTAGCTTTTTCTCTGGGGTTAGACAAACTGGTTAGAATTGTGAAAACGAGATCATGTTTGCAATTATTGCTAAATCAAAATGCTACACTAATAGAGTGGATACACCCAACAATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7424#0 CCGCGAACTCCAAGGAGTGCAAGGCTGAGCTGCGCGAGCACGAGAATACGGTAGAGTGCA 60
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 TTGCCTGGGCCCCGGAATCGGCAGCAGCGGCTATAAACGAGGCAGCCGGAGCAGACAACA 120
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 AGAAGGGTGCACACCAAGGCCCATTCCTGGCATCGGGATCGAGAGACAAAACGATCAGGA 180
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 TTTGGGACGTCAGCTCCGGCTTGTGCCTGTTTACGCTGGCCGGCCACGACAATTGGGTGC 240
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 GTGGTATCGTGTTTCACCCCGGCGGCAAGTACATGATTTCCGCTAGCGACGACAAAACGC 300
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 TACGCATTTGGGATCTACGCAACAAGCGTTGCATGAAAACGCTCTACGCGCACTCACATT 360
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 TCTGTACATCTTTGGATATGCATAAGTCCCATCCTTACGTCATATCCGGCAGCGTGGACA 420
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 CGACGGTTAAAGTTTGGGAGTGCCGCTAAGTCAAATCCCCCGATCCGCCCCCTCTCCCGT 480
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 ACACGACGCCACCTGACCAACTAACCCCAACTCTACCCCAGGTTGGCTGGCAGCTTGTTA 540
consensus_7424#1 ------------------------------------------------------------
consensus_7424#0 CTTTGTGTGTGTGTGTATGTGTGTGTGGGTCCAACGGGAGACTCATTGGCGCTTTCTGTT 600
consensus_7424#1 ------------------CCGCCCACGCGTCCG-CGGGAGACTCATTGGCGCTTTCTGTT 41
* * **** **************************
consensus_7424#0 TTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTG 660
consensus_7424#1 TTATGTTCGCTCTTCGACAAAGCAAAGCAAATTAAACAACCACAGCCACACACCGTATTG 101
************************************************************
consensus_7424#0 TGGGTCTGGAAGGATGCGTGGATTGGCAAAGCAGGAGGACCCAAGGACCACAGTTATCCA 720
consensus_7424#1 TGGGCCTGGAAGGATCCGTGGATTGGCAAAGCAGGAGGACCCACGGACCACAGTTATCCA 161
**** ********** *************************** ****************
consensus_7424#0 GCATCGGCAAGCAGGCACCGTCATCACCACCATCATCATCATCATCATC------GTGGA 774
consensus_7424#1 GCATCGGCAAGCAGGCACCGTCATCACCACCATCATCATCAGCATCATCCTTATCGTGGA 221
***************************************** ******* *****
consensus_7424#0 TACGTTTTCATTGCGATGTGTGC--------GCATGGTTTGTGTTCAGTTTGTGTTGCCG 826
consensus_7424#1 TACGTTTTCATTGCGATGTGTGCACCTGTGCGCATGGTTTGTGTTCAGTTTGTGTTGCCG 281
*********************** *****************************
consensus_7424#0 TCCTCTGTTTAAGGTGGTGTAGAAAGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAA 886
consensus_7424#1 TCCTCTGTTTAGGGTGGTGTAGAAGGTGGGTTTACAATGAGCGGAGGCAATGCAAGCAAA 341
*********** ************ ***********************************
consensus_7424#0 ACTGTGAAAGATAGATGATACATGATAACAAGCGAGAGG--------------------- 925
consensus_7424#1 ACTGTGAAAGATAGATGATACATGATAACAAGCGAGAGGGAAAGAGGAGAAAGGGATGTT 401
***************************************
consensus_7424#0 ------------------------------------------------------------
consensus_7424#1 TTAGTTCAATATTAGTTTACGTTTTGTTCTATTTTACTCATATTGATCCAATGAATATTG 461
consensus_7424#0 ------------------------------------------------------------
consensus_7424#1 TCAGTGGCGGTACGGATGTTTAGTAACATACACACACAAACTGTCGTTAGCCCAACCTTT 521
consensus_7424#0 ------------------------------------------------------------
consensus_7424#1 AGCGCTGGTTCATGCGTGTTCCTTCGTGCTCCTCCTTCTTAGAGCCGCTGGCTGTTAAAC 581
consensus_7424#0 ------------------------------------------------------------
consensus_7424#1 TCTCCAGCAAACCGTTAGCTTTTTCTCTGGGGTTAGACAAACTGGTTAGAATTGTGAAAA 641
consensus_7424#0 ------------------------------------------------------------
consensus_7424#1 CGAGATCATGTTTGCAATTATTGCTAAATCAAAATGCTACACTAATAGAGTGGATACACC 701
consensus_7424#0 ---------
consensus_7424#1 CAACAATTA 710
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||