These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7437#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 903 fasta sequence [ATAAAAATTCCATCTTATAATGAAAGCATACCGGTCACGGCCCGGCTACGTTTGTTCCAGCCGTTAGCGTTGCGGCACGTTGTTTGACCTTGCAGCGATAACGGCACGCAAGTGTCTACAGCAGACTTGAGAGACGACAAGACAAACGATCGCGCGCTGTACAAGAAGAAAGTTGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTC-GGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGAC-GGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTG-TTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATG-GCCGATGCC-GGTGTACAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGC-G-GACGTCTGCAGGAAG-GTGC-GCGAGTC-TGGCATGAAGG-TTGGGCTGGC-GCTCAAACCGGGAACAGCGGTGGAAGCGGTCCAGCAGTACA-TTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGG-GGGGCAAAAGTTTATGGCCGATATGATGCCGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGGTGTTGGGCCGGCCACGATTGAGCAGTGCTCGAAGGCGGGTGCCAATATGATCGTGGCCGGGACTGCGATCATACGGGCCGACGATCAGGCGGCAGTGATTCGCGATTTGCGAAGTGCCGTGCAGAGTGCTATTAATCATGGAGGACAATGCTAATCACAGGNCGCACGCAATAATACGCTAAATATAC] [+] EMBL BX611838 [ATAAAAATTCCATCTTATAATGAAAGCATACCGGTCACGGCCCGGCTACGTTTGTTCCAGCCGTTAGCGTTGCGGCACGTTGTTTGACCTTGCAGCGATAACGGCACGCAAGTGTCTACAGCAGACTTGAGAGACGACAAGACAAACGATCGCGCGCTGTACAAGAAGAAAGTTGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGG CGATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTC GGAGAAGCTGCTCGCGAACGGTGCCGACTATCTGCACCTGGACGTGATGGAC GGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTG TTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAACCCCCAGCAGTGGATTGAACCGATG GCCGATGCC GGTGTGCAGCAGTACACATTCCACATCGAGCCGGTCCTCGATAGCGTGGC G GACGTCTGCAGGAAG GTGC GCGAGTC TGGCATGAAGG TCGGGCTGGC GCTCAAACCGGGAACGGCGGTGGAAGCGGTCCAGCAGTACA TTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGG GGGGCAAAAGTTTATGGCCAATATGATGCCGAAGGTCCAGTGGCTAAGG ] [+] EMBL BX625937 [ gcACAAGACAAACGATCGCGCGCTGTACAAGAAGAAAGTTGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTC GGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGAC GGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTG TTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATG GCCGATGCC GGTGTACAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGC G GACGTCTGCAGGAAG GTGC GCGAGTCTTGGCATGAAGG TTGGGCTGGC GCTCAAACCGGGAACAGCGGTGGAAGCGGTCCAGCAGTACA TTGATAGTGCGGACATGGT ] [+] EMBL AL931614 [ AAGAA TTGC CCGA GGTTCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTCTGGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGACTGGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATGNGCCGATGCCTGGTGTACAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGCTGNGACGTCTGCAGGAAGTGTGCTGCGAGTC TGGCATGAAGGTTTGGGCTGGCTGCTCAAACCGGGAACAGCGGTGGAAGCGGTCCAGCACTACATTTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGGAGGGGCAAAAGTTTATGGGCGATATGATGCCGAAGGTCCAGTGGCTAAGGG ] [+] EMBL BM591514 [ CCGAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTC GGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGAC GGTACCTTCGTTCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTG TTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATG GCCGATGCC GGTGTGCAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGC G GACGTCTGCAGGAAG GTGC GCGAGTC TGGCATGAAGG TCGGGCTGGC GCTCAAACCGGGAACGGCGGTGGAAGCGGTCCAGCAGTACA TTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGG GGGGCAAAAGTTTATGGCCGATATGATGCCGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGGTGTTGGGCCGGCCACGATTGAGCAGTGCTCGAAGGCGGGTGCCAATATGATCGTGGCCGGGACTGCGATCATACGGGCCGACGATCAGGCGGCAGTGATTCGCGATTTGCGAAGTGCCGTGCAGAGTGCTATTAATCATG ] [+] EMBL BX623177 [ ACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTC GGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGAC GGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTG TTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATG GCCGATGCC GGTGTACAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGC G GACGTCTGCAGGAAG GTGC GCGAGTC TGGCATGAAGG TTGGGCTGGC GCTCAAACCGGGAACAGCGGTGGAAGCGGTCCAGCAGTACA TTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGG GGGGCAAAAGTTTATGGGCGATATGATGCCGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGGTGTTGGGCCGGCCACGATTGAGCAGTGCTCGAAGGCGGGTGCCAATATGATCGTGGCCGGGACTGCGATCATACGGGCCGACGATCAGGCGGCAGTGATTCGCGATTTGCGAAGTGCCGTGCAGAGTGCTATTAATCATGGAGGACAATGCTAATCACAGGNCGCACGCAATAATACGCTAAATATAC] consensusID : consensus_7437#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGCGCGCTGTACAAGAAGAAAGTAGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTCGGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGACGGTACCTTCGTTCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATGGCCGATGCCGGTGTGCAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCTGGCATGAAGGTCGGGCTGGCGCTCAAACCGGGAACGGCGGTGGAAGCGGTCCAGCAGTACATTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGGGGGGCAAAAGTTTATGGCCGATATGATGCCGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGGGTGTTGGGCCGGCCACGATTGAGCAGCTCGAAGGCGGGTGCCAATATGATCG] [+] EMBL BM590145 [CCGCCCACGCGTCCGCCCACGCGTCCGGCGCGCTGTACAAGAAGAAAGTAGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTCGGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTGATGGACGGTACCTTCGTTCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATGGCCGATGCCGGTGTGCAGCAGTACACATTCCACATCGAACCGGTCCTCGATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCTGGCATGAAGGTCGGGCTGGCGCTCAAACCGGGAACGGCGGTGGAAGCGGTCCAGCAGTACATTGATAGTGCGGACATGGTGCTGGTGATGACGGTGGAGCCCGGCTTCGGGGGGCAAAAGTTTATGGCCGATATGATGCCGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGGGTGTTGGGCCGGCCACGATTGAGCAGCTCGAAGGCGGGTGCCAATATGATCG] consensusID : consensus_7437#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 512 fasta sequence [GGCCAAGAATCGGCACGNGGAGCAGACTTGAGAGCACAAGACAAACGATCGCGCGCTGTACAAGAAGAAAGTTGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTCGGAGAAGCTGCTCGCGAACGGTGCCGACTATCTGCACCTGGACGTGATGGACGGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATGGCCGATGCCGGTGTGCAGCAGTACACATTCCACATCGAGCCGGTCCTCGATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCCGGCCATCTCGAGCCGGTCCTCGATAGCGTGGCGGACGTCTGCAGGAAGGTGCGGCGAGTCTGGCATGAAGGTCGGGGCTGGGCGCTCAAACCGGG] [+] EMBL BX467914 [GGCCAAGAATCGGCACGNGGAGCAGACTTGAGAGCACAAGACAAACGATCGCGCGCTGTACAAGAAGAAAGTTGCTCCAAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAGCTGCACGAGGAGTCGGAGAAGCTGCTCGCGAACGGTGCCGACTATCTGCACCTGGACGTGATGGACGGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGAAACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGGATTGAACCGATGGCCGATGCCGGTGTGCAGCAGTACACATTCCACATCGAGCCGGTCCTCGATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCCGGCCATCTCGAGCCGGTCCTCGATAGCGTGGCGGACGTCTGCAGGAAGGTGCGGCGAGTCTGGCATGAAGGTCGGGGCTGGGCGCTCAAACCGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7437#0 ATAAAAATTCCATCTTATAATGAAAGCATACCGGTCACGGCCCGGCTACGTTTGTTCCAG 60 consensus_7437#1 ------------------------------------------------------------ consensus_7437#2 ------------------------------------------------------------ consensus_7437#0 CCGTTAGCGTTGCGGCACGTTGTTTGACCTTGCAGCGATAACGGCACGCAAGTGTCTACA 120 consensus_7437#1 ------------------------------------------------------------ consensus_7437#2 -----------------------------------------GGCCAAGAATCGGCACGNG 19 consensus_7437#0 GCAGACTTGAGAGACGACAAGACAAACGATCG-CGCGCTGTACAAGAAGAAAGTTGCTCC 179 consensus_7437#1 -----CCGCCCACGCGTCCGCCCACGCGTCCGGCGCGCTGTACAAGAAGAAAGTAGCTCC 55 consensus_7437#2 GAGCAGACTTGAGAGCACAAGACAAACGATCG-CGCGCTGTACAAGAAGAAAGTTGCTCC 78 * * ** ** ** ********************* ***** consensus_7437#0 AAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAG 239 consensus_7437#1 AAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAG 115 consensus_7437#2 AAAATGGCCCCACTCAGTGCTCGCATTGGCCCATCGATTCTTAATGCCGATCTTTCCCAG 138 ************************************************************ consensus_7437#0 CTGCACGAGGAGTCGGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTG 299 consensus_7437#1 CTGCACGAGGAGTCGGAGAAGCTGCTCGCAAACGGTGCCGACTATCTGCACCTGGACGTG 175 consensus_7437#2 CTGCACGAGGAGTCGGAGAAGCTGCTCGCGAACGGTGCCGACTATCTGCACCTGGACGTG 198 ***************************** ****************************** consensus_7437#0 ATGGACGGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGA 359 consensus_7437#1 ATGGACGGTACCTTCGTTCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGA 235 consensus_7437#2 ATGGACGGTACCTTCGTGCCGAACCTCACCTTTGGCCATCCGGTGGTGAAGTGTTTGCGA 258 ***************** ****************************************** consensus_7437#0 AACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGG 419 consensus_7437#1 AACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGG 295 consensus_7437#2 AACAAAATCAAGGATGCATTTTTCGAGACGCACATGATGGTGCAGAATCCCCAGCAGTGG 318 ************************************************************ consensus_7437#0 ATTGAACCGATGGCCGATGCCGGTGTACAGCAGTACACATTCCACATCGAACCGGTCCTC 479 consensus_7437#1 ATTGAACCGATGGCCGATGCCGGTGTGCAGCAGTACACATTCCACATCGAACCGGTCCTC 355 consensus_7437#2 ATTGAACCGATGGCCGATGCCGGTGTGCAGCAGTACACATTCCACATCGAGCCGGTCCTC 378 ************************** *********************** ********* consensus_7437#0 GATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCTGGCATGAAGGTTGGGCTGGCG 539 consensus_7437#1 GATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCTGGCATGAAGGTCGGGCTGGCG 415 consensus_7437#2 GATAGCGTGGCGGACGTCTGCAGGAAGGTGCGCGAGTCCGGC---CATCTCGAGCCGGTC 435 ************************************** *** * * * ** ** consensus_7437#0 CTCAAACCGGGAACAGCGGTGGAAGCGGTCCAGCAGTACATTGATAGTGCGGACATGGTG 599 consensus_7437#1 CTCAAACCGGGAACGGCGGTGGAAGCGGTCCAGCAGTACATTGATAGTGCGGACATGGTG 475 consensus_7437#2 CTC------GATAGCGTGGCGGACGTC-TGCAGGAAGGTGCGGCGAGT-CTGGCATGAAG 487 *** * * * ** *** * * *** * * *** * * **** * consensus_7437#0 CTGGTGAT--GACGGTGGAGCCCGGCTTCGGGGGGCAAAAGTTTATGGCCGATATGATGC 657 consensus_7437#1 CTGGTGAT--GACGGTGGAGCCCGGCTTCGGGGGGCAAAAGTTTATGGCCGATATGATGC 533 consensus_7437#2 GTCGGGGCTGGGCGCTCAAACCGGG----------------------------------- 512 * * * * ** * * ** ** consensus_7437#0 CGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGG-T 716 consensus_7437#1 CGAAGGTCCAGTGGCTAAGGGAGCACTACCCTGCCCTAGACATTGAGGTGGACGGTGGGT 593 consensus_7437#2 ------------------------------------------------------------ consensus_7437#0 GTTGGGCCGGCCACGATTGAGCAGTGCTCGAAGGCGGGTGCCAATATGATCGTGGCCGGG 776 consensus_7437#1 GTTGGGCCGGCCACGATTGAGCAG--CTCGAAGGCGGGTGCCAATATGATCG-------- 643 consensus_7437#2 ------------------------------------------------------------ consensus_7437#0 ACTGCGATCATACGGGCCGACGATCAGGCGGCAGTGATTCGCGATTTGCGAAGTGCCGTG 836 consensus_7437#1 ------------------------------------------------------------ consensus_7437#2 ------------------------------------------------------------ consensus_7437#0 CAGAGTGCTATTAATCATGGAGGACAATGCTAATCACAGGNCGCACGCAATAATACGCTA 896 consensus_7437#1 ------------------------------------------------------------ consensus_7437#2 ------------------------------------------------------------ consensus_7437#0 AATATAC 903 consensus_7437#1 ------- consensus_7437#2 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||