These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7452#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1074 fasta sequence [GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTGCTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGCAATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAATATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCATTTTCACACCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGCACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATGTGTATACGCTAATGTTGGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTTAATACTACCACCGTCTCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCTTTTTTTTGTGCGCATTCAATCACACACACACACACATACCCACTTACTCTCAAGTTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCCTATAACATGTAGTAGCTTTGTTGAGAAAGCGAAGGGAAAACCAGAAAGGAAGTAAGTTGCTTCCTGTTTTGTTTTTTTTTTCTCTCTTCGGGTGGTATATTTAAATCCAAGTCAGACTCGAAAAATGTTTTCTATTCCTTTTTTTTCTTTTAAAATTATTAAAAAAATTGTAGAAACAGAAATGGTGTCGTTGGGAAAAGGTAGTGGAAGGAAGAACGAGAGAATGGCGCGTACACGAAAATGCGCACAGGCAGGCATTAACACGGAGAGGGGGAAACCGAACGAACACTGGGTGGCAGCAGACAGGAAACATGAAAAATGAGATAAACAATTGTATATGAGAAATCCCTTTGCTCTAAGGAGATAAACACACACACACACATACATACACATACACTCACACTGTCATATTTATGCGGAA] [+] EMBL BX619604 [GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTGCTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGCAATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAATATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCATTTTCACACCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGCACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATGTGTATACGC ] [+] EMBL BX625928 [GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTGCTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGCAATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAATATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCATTTTCACACCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGTGTGTGT ] [+] EMBL BX602656 [GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTGCTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGCAATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAATATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCATTTTCACACCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGT ] [+] EMBL BX602736 [GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTGCTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGCAATTGTCGCACACCAAC ] [+] EMBL BM602535 [ ccgTTTTCGATTACACGCAATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAATATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCATTTTCACACCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGCACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATTTGTATACGCTAATGTTGGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTTAATACTACCACCGTCTCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCTTTTTTTTGTGCGCATTCAATCACACACACACACACATACCCACTTACTCTCAAGTTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCCTATAACATGTAGTAGCTTTGTTGAGAAAGCGAAGGGAAAACCAGAAAGGAAGTAAGTTGCTTCCTGTTTTGTTTTTTTTTTCTCTCTTCGGGTGGTATATTTAAATCCAAGTCAGACTCGAAAAATG ] [+] EMBL BX615560 [ TCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCTTTTTTTTGTGCGCATTCAATCACACACACACACACATACCCACTTACTCTCAAGTTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCCTATAACATGTAGTAGCTTTGTTGAGAAAGCGAAGGGAAAACCAGAAAGGAAGTAAGTTGCTTCCTGTTTTGTTTTTTTTTTCTCTCTTCGGTTGGTATATTTAAATCCAAGTCAGACTCGAAAAATGTTTTCTATTCCTTTTTTTTCTTTTAAAATTATTAAAAAAATTGTAGAAACAGAAATGGTGTCGTTGGGAAAAGGTAGTGGAAGGAAGAACGAGAGAATGGCGCGTACACGAAAATGCGCACAGGCAGGCATTAACACGGAGAGGGGGAAACCGAACGAACACTGGGTGGCAGCAGACAGGAAACATGAAAAATGAGATAAACAATTGTATATGAGAAATCCCTTTGCTCTAAGGAGATAAACACACACACACACATACATACACATACACTCACACTGTCATATTTATGCGGAA] consensusID : consensus_7452#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 424 fasta sequence [CCGCGGACGCGTGGGCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGCACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATTTGTATACGCTAATGTTGGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTAAATACTACCACCGTCTCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCTTTTTTTTTTGTTTGTGCGCATTCAAACACACACACACACACATACCCAGTTACTCTCAAGTTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCCTATAACATG] [+] EMBL BM586042 [CCGCGGACGCGTGGGCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGCACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATTTGTATACGCTAATGTTGGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTAAATACTACCACCGTCTCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCTTTTTTTTTTGTTTGTGCGCATTCAAACACACACACACACACATACCCAGTTACTCTCAAGTTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCCTATAACATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7452#0 GCTCGTTCCATCCCTTCACTTTTTCCCCTTCTTCCCGGACTGTGAAATGGACAGGTTTTG 60 consensus_7452#1 ------------------------------------------------------------ consensus_7452#0 CTTACCTTTTTTTCTTCTTCTTTTCCTTCCCTTCCTATTGTTGGCTTTTCGATTACACGC 120 consensus_7452#1 ------------------------------------------------------------ consensus_7452#0 AATTGTCGCACACCAACTCAACCAGTGCGCGTAAAATAATAGATTTATGTATTTTACAAT 180 consensus_7452#1 ------------------------------------------------------------ consensus_7452#0 ATATATATTATACTCATTTAAATTCATAACATACGCCCTAACCCCGCCTCCTCCACCCCA 240 consensus_7452#1 -------------------------------------------------------CCGCG 5 ** * consensus_7452#0 TTTTCACAC-CTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTG 299 consensus_7452#1 GACGCGTGGGCTCGTATTGTTGGTGTGCATACCGTGCATGCGGATGTGTGTGTGTGTGTG 65 * ************************************************** consensus_7452#0 TGTGTGTGTGTGCGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGC 359 consensus_7452#1 TG----------CGTGCGTGCGTTTTTTGTCGCCTTAATTAAGGCGCGCCACGTGACGGC 115 ** ************************************************ consensus_7452#0 ACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATGTGTATACGCTAATGT 419 consensus_7452#1 ACTTAGTAATCGCAATCGAATCGAGGGCGCAAACTATTAATAATTTGTATACGCTAATGT 175 ******************************************** *************** consensus_7452#0 TGGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTTAATACTACCACCGT 479 consensus_7452#1 TGGTGTGTCCTTCCATTTCGCTACATCCCCGCTACCTTCCCGACTAAATACTACCACCGT 235 ********************************************* ************** consensus_7452#0 CTCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCT 539 consensus_7452#1 CTCTGGACGCTTCGATTGTCTGGGTTTGCGCGTTAATAATGCTTATTTTTATGGTTTTCT 295 ************************************************************ consensus_7452#0 TTTTTTT------GTGCGCATTCAATCACACACACACACACATACCCACTTACTCTCAAG 593 consensus_7452#1 TTTTTTTTTGTTTGTGCGCATTCAAACACACACACACACACATACCCAGTTACTCTCAAG 355 ******* ************ ********************** *********** consensus_7452#0 TTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCC 653 consensus_7452#1 TTATGGTTATATTGTAACGTCCCTCACCCCTCCCGAGCGGGAGATAATTGCGGAAAGGCC 415 ************************************************************ consensus_7452#0 TATAACATGTAGTAGCTTTGTTGAGAAAGCGAAGGGAAAACCAGAAAGGAAGTAAGTTGC 713 consensus_7452#1 TATAACATG--------------------------------------------------- 424 ********* consensus_7452#0 TTCCTGTTTTGTTTTTTTTTTCTCTCTTCGGGTGGTATATTTAAATCCAAGTCAGACTCG 773 consensus_7452#1 ------------------------------------------------------------ consensus_7452#0 AAAAATGTTTTCTATTCCTTTTTTTTCTTTTAAAATTATTAAAAAAATTGTAGAAACAGA 833 consensus_7452#1 ------------------------------------------------------------ consensus_7452#0 AATGGTGTCGTTGGGAAAAGGTAGTGGAAGGAAGAACGAGAGAATGGCGCGTACACGAAA 893 consensus_7452#1 ------------------------------------------------------------ consensus_7452#0 ATGCGCACAGGCAGGCATTAACACGGAGAGGGGGAAACCGAACGAACACTGGGTGGCAGC 953 consensus_7452#1 ------------------------------------------------------------ consensus_7452#0 AGACAGGAAACATGAAAAATGAGATAAACAATTGTATATGAGAAATCCCTTTGCTCTAAG 1013 consensus_7452#1 ------------------------------------------------------------ consensus_7452#0 GAGATAAACACACACACACACATACATACACATACACTCACACTGTCATATTTATGCGGA 1073 consensus_7452#1 ------------------------------------------------------------ consensus_7452#0 A 1074 consensus_7452#1 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||