These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7467#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1048 fasta sequence [CCGGGACAGTGCGCAGTGTAAGGGGCATCATTCGTACCGGAGCCGCTAAGGGAAAGTTTGTTCTGGTCCAGTACATAGTAATTTGTAATACATTCATTTTTCATACACTCATCATCTTTCCACTCCCTCTCTCTATATCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTTTTTTTTTGTTTTCGCCAGTGTGCAAAGATTGGTGTGTCAAGCATTAGCGGAGAGGCCCAGTACAGTACGTTCACTTGTGGTGAGCTAAATCACACTTATCATTGAAGGGGATAAGTTGAAACATGGATAGAGGGAGGCAGAGATAGGGAGATTACAGGCTTTTACCTCAAGAAGAAGGAATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAGCACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGAAAGTTTGCTAGGCCGTTGTAATTGATAATTTTCCGTTTTCTTTTTTTATGTCAATATCTCCTATCGAGGGGATGCCGTAAGAGATAAAAACAAGCCAGAGAAAAGATTGAAAAAAACATTGGAACCAGTTGCAAGTTGTAAAA-CCCAACGGGTTCGGTAAAGAAAGTACCGGAAAAGCAACACTCCCCATCCCACTATTTTTAGCCGTGAAAATTAATTATCACTTTTTTCATCGTCTATACATACACATTAGTGGTTTGTAATGTGCAAAAATGGAAATATAGAAGAAGGGGAGTGAAGAGGATAGAGAGGGAGCAGCAAAACGGAAGATGTAGCAACAAAACCATAAGGACGAAAGGAGAACGAGAATGCATTAAATGATTGTAACAACCACTAGAGGGATGTGTTTTTAGAAATACGATCGATGTACGATCAATGTCAACAAGCCCTAGCTAGGTTAGTAGTGTGGCACGAGAACGATGGCCAACACAGAGTACAGAGTTAAACAATGGCAAACCATAGCAGAGGGTTGTTGTTGAAATAAATGAACCCCATTTAAGTGTAACCAC] [+] EMBL BM636211 [CCGGGACAGTGCGCAGTGTAAGGGGCATCATTCGTACCGGAGCCGCTAAGGGAAAGTTTGTTCTGGTCCAGTACATAGTAATTTGTAATACATTCATTTTTCATACACTCATCATCTTTCCACTCCCTCTCTCTATATCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTTTTTTTTTGTTTTCGCCAGTGTGCAAAGATTGGTGTGTCAAGCATTAGCGGAGAGGCCCAGTACAGTACGTTCACTTGTGGTGAGCTAAATCACACTTATCATTGAAGGGGATAAGTTGAAACATGGATAGAGGGAGGCAGAGATAGGGAGATTACAGGCTTTTACCTCAAGAAGAAGGAATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAGCACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGAAAGTTTGCTAGGCCGTTGTAATTGATAATTTTCCGTTTTCTTTTTTTATGTCAATATCTCCTATCGAGGGGATGCCGTAAGAGATAAAAACAAGCCAGAGAAAAGATTGAAAAAAACATTGGAACCAGTTGCAAGTTGTAAAA CCCAACGGGTTCGGTAAAGAAAGTACCGGAAAAGCAACACTCCCCATCCCACTATT ] [+] EMBL BM614407 [ ccGACAGTGCGCAGTGTAAGGGGCATCATTCGTACCGGAGCCGCTAAGGGAAAGTTTGTTCTGGTCCAGTACATAGTAATTTGTAATACATTCATTTTTCATACACTCATCATCTTTCCACTCCCTCTCTCTATATCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTTTTTTTTTGTTTTCGCCAGTGTGCAAAGATTGGTGTGTCAAGCATTAGCGGAGAGGCCCAGTACAGTACGTTCACTTGTGGTGAGCTAAATCACACTTATCATTGAAGGGGATAAGTTGAAACATGGATAGAGGGAGGCAGAGATAGGGAGATTACAGGCTTTTACCTCAAGAAGAAGGAATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAGCACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGAAAGTTTGCTAGGCCGTTGTAATTGATAATTTTCCGTTTTCTTTTTTTATGTCAATATCTCCTATCGAGGGGATGCCGTAAGAGATAAAAACAAGCCAGAGAAAAGATTGAAAAAAACATTGGAACCAGTTGCAAGTTGTAAAACCCCAACGGGTTCGGTAAAGAAAGTACCGGAAAAGCAACACTCCCCATCCCAC ] [+] EMBL BM610675 [ ccgGCGCAGTGTAAGGGGCATCATCCGTACCGGAGCCGCTAAGGGAAGGTTTGTTCTGGTTCAGTACATAGTAATTTGTAATACATTCATTTTTCATACACTCATCATCTTTCCACTCCCTCTCTCTATCTCTCTGGTTGATAGTAATATCCCTGTGTTGGAGTGTGGTTG TTTTTTTGTTTTCGTCAGTGTGCAAAGATTGGTGTGTCAAGCATTAGCGGAGAGGCCCAGTTCAGTACGGTCACTTGTGGTGAGCCAAATCACACTTATTATTGAAGGGGATAGGTTGAAAGATAGATAGAGCGAGGCAGAGATAGGGAGATTACAGGCTTTTACCTCAAGAAGAAGGAATTATTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAGCACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGCGCCAGGACGAAGGAGAACG AGGTTTGCTAGGTCG TGTAATTGATAATTTTCCGTTTTCTTTTTTTATGTCAATATCTCCTATCAAGGGGAGGCCGTAAGAGATGAAAACAAGCCAGAGA ] [+] EMBL BM589199 [ ccgGTTGTAAAA CCCAACGGGTTCGGTAAAGAAAGTACCGGAAAAGCAACACTCCCCATCCCACTATTTTTAGCCGTGAAAATTAATTATCACTTTTTTCATCGTCTATACATACACATTAGTGGTTTGTAATGTGCAAAAATGGAAATATAGAAGAAGGGGAGTGAAGAGGATAGAGAGGGAGCAGCAAAACGGAAGATGTAGCAACAAAACCATAAGGACGAAAGGAGAACGAGAATGCATTAAATGATTGTAACAACCACTAGAGGGATGTGTTTTTAGAAATACGATCGATGTACGATCAATGTCAACAAGCCCTAGCTAGGTTAGTAGTGTGGCACGAGAACGATGGCCAACACAGAGTACAGAGTTAAACAATGGCAAACCATAGCAGAGGGTTGTTGTTGAAATAAATGAACCCCATTTAAGTGTAACCAC] consensusID : consensus_7467#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 982 fasta sequence [CCGCCCACGCGTCCGCCCTCTCTCTATCTCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTTTTTTTTTTGTTTTCGTCAGTGTGCAAATATTGGCGTGTCAAGCATTAGCGGAGAGGCCCAGTTCAGTACGTTCACTTGTGGTGAGCTAAATCTCACTTATTATTGAAGACGATAAGTTGAAAGATAGATAGAGGGAGGCAGAGATAGGGAGATTACAGGATTTTACCTCAAGAGGAAGGAATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAACACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGAAGGTTTTGCTAGGTCGTTGTAATTGATAATTTTTCGTTTACTTTTTTTTTATATGCCAATATCTCCTGTTGAGGGAAGGCTGTAAGAGATGAAAACAAGCAGAAGACAAGTAAGAGATGAAACAACAAATTGCACCTGAAATGCTAAGTAGAGAAAAAAGATTAAAAAAACATTGAAACCAGTTGCAAGTTGTAAAACCCAACTTTCGGTTCGGTAAAGAAAGTACTGGAAAAGCAACACACCCCATCCCACTATTTTTAGCCGTGAAAATTAATTATCACTTTTTTCATCGTCTATACATACACTATTAGTGGTTTGTAATGTGCAAAAAATGGAAATATAGAAGAAGGGGAGTGAAGAGGATAAAGATGGAGCAGCAAAACGGAACATGTAGCAACAAAACCATAAGGACGAAAGGAAAACGAGAATGCATTAAATGATTGTAACAACCACTAGAGGGATGTGTTTTTAGAAATACGATCGATGTACGATCAATGTCAACAAGCCCTAGCTAGGTTAGTAGTGTGGCACGAGAACGATGGCCAACACAGAGTACAGAGTTAAACAATGGCAAACCAATAGCAGAGGGTTGTTGTTGAAATAAATGAACC] [+] EMBL BM583641 [CCGCCCACGCGTCCGCCCTCTCTCTATCTCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTTTTTTTTTTGTTTTCGTCAGTGTGCAAATATTGGCGTGTCAAGCATTAGCGGAGAGGCCCAGTTCAGTACGTTCACTTGTGGTGAGCTAAATCTCACTTATTATTGAAGACGATAAGTTGAAAGATAGATAGAGGGAGGCAGAGATAGGGAGATTACAGGATTTTACCTCAAGAGGAAGGAATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAACACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGAAGGTTTTGCTAGGTCGTTGTAATTGATAATTTTTCGTTTACTTTTTTTTTATATGCCAATATCTCCTGTTGAGGGAAGGCTGTAAGAGATGAAAACAAGCAGAAGACAAGTAAGAGATGAAACAACAAATTGCACCTGAAATGCTAAGTAGAGAAAAAAGATTAAAAAAACATTGAAACCAGTTGCAAGTTGTAAAACCCAACTTTCGGTTCGGTAAAGAAAGTACTGGAAAAGCAACACACCCCATCCCACTATTTTTAGCCGTGA ] [-] EMBL BX621681 [ ATGCCAATATCTCCTGTTGAGGGAAGGCTGTAAGAGATGAAAACAAGCAGAAGACAAGTAAGAGATGAAACAACAAATTGCACCTGAAATGCTAAGTAGAGAAAAAAGATTAAAAAAACATTGAAACCAGTTGCAAGTTGTAAAACCCAACTTTCGGTTCGGTAAAGAAAGTACTGGAAAAGCAACACACCCCATCCCACTATTTTTAGCCGTGAAAATTAATTATCACTTTTTTCATCGTCTATACATACACTATTAGTGGTTTGTAATGTGCAAAAAATGGAAATATAGAAGAAGGGGAGTGAAGAGGATAAAGATGGAGCAGCAAAACGGAACATGTAGCAACAAAACCATAAGGACGAAAGGAAAACGAGAATGCATTAAATGATTGTAACAACCACTAGAGGGATGTGTTTTTAGAAATACGATCGATGTACGATCAATGTCAACAAGCCCTAGCTAGGTTAGTAGTGTGGCACGAGAACGATGGCCAACACAGAGTACAGAGTTAAACAATGGCAAACCAATAGCAGAGGGTTGTTGTTGAAATAAATGAACC] consensusID : consensus_7467#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [ACGATTGGCACCATCGCAGCACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGGAGAACGAGGTTTGCTAGGTCGTTGTAATTGATAATTTTCTGTTTTCTTTTTTTTATGTCAATATCTCCTATCAAAGGGAGGCCGTAAGAGATGAAAACAAGCCAGAAAAAAGATTAAAAAAAAAAAAAAACATTGGAACCAGTTGCAAGTTGTAAAACCCAACGGGTTCGGTAAAGAAAGTACCGGAAAAGCAACACACCCCATCCCACTATTTTTAGCGCGTGAAAATTAATTATCACTTTTTTCATCGTCTATACATACACATTAAAAAAAAAGTAAT] [+] EMBL CNS08PEN [ACGATTGGCACCATCGCAGCACAGTATTTTCCAGCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGGAGAACGAGGTTTGCTAGGTCGTTGTAATTGATAATTTTCTGTTTTCTTTTTTTTATGTCAATATCTCCTATCAAAGGGAGGCCGTAAGAGATGAAAACAAGCCAGAAAAAAGATTAAAAAAAAAAAAAAACATTGGAACCAGTTGCAAGTTGTAAAACCCAACGGGTTCGGTAAAGAAAGTACCGGAAAAGCAACACACCCCATCCCACTATTTTTAGCGCGTGAAAATTAATTATCACTTTTTTCATCGTCTATACATACACATTAAAAAAAAAGTAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7467#1 ------------------------------------------------------------ consensus_7467#2 ------------------------------------------------------------ consensus_7467#0 CCGGGACAGTGCGCAGTGTAAGGGGCATCATTCGTACCGGAGCCGCTAAGGGAAAGTTTG 60 consensus_7467#1 -------------------------------------------------CCGCCCACGCG 11 consensus_7467#2 ------------------------------------------------------------ consensus_7467#0 TTCTGGTCCAGTACATAGTAATTTGTAATACATTCATTTTTCATACACTCATCATCTTTC 120 consensus_7467#1 TCCGCCCTCTCTCTATCTCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTT 71 consensus_7467#2 ------------------------------------------------------------ consensus_7467#0 CACTCCCTCTCTCTATATCTCTGGTTGAAAGTAATATCCCTGTGTATGAGTGTGGTTGTT 180 consensus_7467#1 TTTTTTTTGTTTTCGTCAGTGTGCAAATATTGGCGTGTCAAGCATTAGCGGAGAGGCCCA 131 consensus_7467#2 ------------------------------------------------------------ consensus_7467#0 TTTTTTT-GTTTTCGCCAGTGTGCAAAGATTGGTGTGTCAAGCATTAGCGGAGAGGCCCA 239 consensus_7467#1 GTTCAGTACGTTCACTTGTGGTGAGCTAAATCTCACTTATTATTGAAGACGATAAGTTGA 191 consensus_7467#2 ------------------------------------------------------------ consensus_7467#0 GTACAGTACGTTCACTTGTGGTGAGCTAAATCACACTTATCATTGAAGGGGATAAGTTGA 299 consensus_7467#1 AAGATAGATAGAGGGAGGCAGAGATAGGGAGATTACAGGATTTTACCTCAAGAGGAAGGA 251 consensus_7467#2 ------------------------------------------------------------ consensus_7467#0 AACATGGATAGAGGGAGGCAGAGATAGGGAGATTACAGGCTTTTACCTCAAGAAGAAGGA 359 consensus_7467#1 ATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAACACAGTATTTTCCA 311 consensus_7467#2 ---------------------------ACGATTGGCACCATCGCAGCACAGTATTTTCCA 33 consensus_7467#0 ATTACTCGTTTTCGTACTTTTCGTCCAACGATTGGCACCATCGCAGCACAGTATTTTCCA 419 ****************** ************** consensus_7467#1 GCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGA 371 consensus_7467#2 GCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGGAGAACGA 93 consensus_7467#0 GCAAAAAGAAAGCAATTGAGGGAAAAGGCAGCCCAGCAGAGCCAGGACGAAGAAGGAGGA 479 **************************************************** ** * ** consensus_7467#1 AGGTTTTGCTAGGTCGTTGTAATTGATAATTTTTCGTTTACTTTTTTTTTATATGCCAAT 431 consensus_7467#2 GG--TTTGCTAGGTCGTTGTAATTGATAATTTTCTGTTTTCTTTTTTTT---ATGTCAAT 148 consensus_7467#0 AAG-TTTGCTAGGCCGTTGTAATTGATAATTTTCCGTTTTCTTTTTTT----ATGTCAAT 534 ********* ******************* **** ******** *** **** consensus_7467#1 ATCTCCTGTTGAGGGAAGGCTGTAAGAGATGAAAACAAGCAGAAGACAAGTAAGAGATGA 491 consensus_7467#2 ATCTCCTATCAAAGGGAGGCCGTAAGAGATGAAAACAAGC------CAGAAAAAAGAT-- 200 consensus_7467#0 ATCTCCTATCGAGGGGATGCCGTAAGAGATAAAAACAAGC------CAGAGAAAAGAT-- 586 ******* * * ** * ** ********* ********* ** ** **** consensus_7467#1 AACAACAAATTGCACCTGAAATGCTAAGTAGAGAAAAAAGATTAAAAAAACATTGAAACC 551 consensus_7467#2 ----------------------------TAAAAAAAAAA------AAAAACATTGGAACC 226 consensus_7467#0 -------------------------------TGAAAAAA----------ACATTGGAACC 605 ****** ****** **** consensus_7467#1 AGTTGCAAGTTGTAAAACCCAACTTTCGGTTCGGTAAAGAAAGTACTGGAAAAGCAACAC 611 consensus_7467#2 AGTTGCAAGTTGTAAAACCCAACG---GGTTCGGTAAAGAAAGTACCGGAAAAGCAACAC 283 consensus_7467#0 AGTTGCAAGTTGTAAAACCCAACG---GGTTCGGTAAAGAAAGTACCGGAAAAGCAACAC 662 *********************** ******************* ************* consensus_7467#1 ACCCCATCCCACTATTTTTAGC-CGTGAAAATTAATTATCACTTTTTTCATCGTCTATAC 670 consensus_7467#2 ACCCCATCCCACTATTTTTAGCGCGTGAAAATTAATTATCACTTTTTTCATCGTCTATAC 343 consensus_7467#0 TCCCCATCCCACTATTTTTAGC-CGTGAAAATTAATTATCACTTTTTTCATCGTCTATAC 721 ********************* ************************************* consensus_7467#1 ATACACTATTAGTGGTTTGTAATGTGCAAAAAATGGAAATATAGAAGAAGGGGAGTGAAG 730 consensus_7467#2 ATACACATTAAAAAAAAAGTAAT------------------------------------- 366 consensus_7467#0 ATACAC-ATTAGTGGTTTGTAATGTGCAAAAA-TGGAAATATAGAAGAAGGGGAGTGAAG 779 ****** * * ***** consensus_7467#1 AGGATAAAGATGGAGCAGCAAAACGGAACATGTAGCAACAAAACCATAAGGACGAAAGGA 790 consensus_7467#2 ------------------------------------------------------------ consensus_7467#0 AGGATAGAGAGGGAGCAGCAAAACGGAAGATGTAGCAACAAAACCATAAGGACGAAAGGA 839 consensus_7467#1 AAACGAGAATGCATTAAATGATTGTAACAACCACTAGAGGGATGTGTTTTTAGAAATACG 850 consensus_7467#2 ------------------------------------------------------------ consensus_7467#0 GAACGAGAATGCATTAAATGATTGTAACAACCACTAGAGGGATGTGTTTTTAGAAATACG 899 consensus_7467#1 ATCGATGTACGATCAATGTCAACAAGCCCTAGCTAGGTTAGTAGTGTGGCACGAGAACGA 910 consensus_7467#2 ------------------------------------------------------------ consensus_7467#0 ATCGATGTACGATCAATGTCAACAAGCCCTAGCTAGGTTAGTAGTGTGGCACGAGAACGA 959 consensus_7467#1 TGGCCAACACAGAGTACAGAGTTAAACAATGGCAAACCAATAGCAGAGGGTTGTTGTTGA 970 consensus_7467#2 ------------------------------------------------------------ consensus_7467#0 TGGCCAACACAGAGTACAGAGTTAAACAATGGCAAACCA-TAGCAGAGGGTTGTTGTTGA 1018 consensus_7467#1 AATAAATGAACC------------------ 982 consensus_7467#2 ------------------------------ consensus_7467#0 AATAAATGAACCCCATTTAAGTGTAACCAC 1048 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||