|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7471#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1115 fasta sequence
[TGCGATGGTGTATGTGTTCCAGGCCTGAGCCCTGCTTTGCAAACGGGCAAATCAAGAAAACATTTAACATTAGAAAAAGATTAAAACAAGAAAACAACAACACACAACCAGAAACGAAAAGTGCAACAACTCCTAAAAATATGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGATAGAGAGAAAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAAAGAGAGAGAAAGAGAGAGAGAGTGGAGGGAACAGAATAAGGCAAGGACTCAAACTCTGTTCAATTATGTTTTTCCCATTTTTTCCCCTCTCTTCTCTATGCGCGTAATCTTCGGCTGCCCGAATGCCCCGATTCAAC-GGAACAAAATTTTGAGGTTATGTTGGCGTTCTGCTTCGGCAGCTCGGAG-GACAACTGGC-GCCTGGAGGGGTCTTTTCCTAAC-GCTACTGCTTCGCTACGTCCACGTCCACGTTCC-GGAGCAGTGGATTC-GCACACC-GGCCCAGTGAGCTTTGG-TTGGCCAATGGTG-TTTTGCAA-TG-GTGTGCGTTTTGCTG-TTGT-TGTTGT-TGT-TGTTTTGTCGC-TGTCGGC-G-CAGCAGCAGTTGCGGTGGCTGAC-TGTGGTCGGGACGATCGTTGGCGCTGCG-CCGTGTTGGATAC-T-GGA-TGTCGATGTTTTCTAA-ATGTAA-TGGGTCCAAA-TTCGTGTAGATGTG-TGTATGTA-TG-TGTGCTTG-TGAGCGCGTGTGT-GTGTGCG-AGTGTGAGTGCGTGTGTTACGCGAAA-TTGGGAACGAGCGGAACCGAACCGAGCAGACGCGGTGTGTACGTTGGAAGCGAA-ACGGCTGAAC-GG-AAGGCTGG-CGG-TGCATTGGTGCAA-GATACG-AAACTATTGCAAACATCCT-TAAA-TCTAGCCAAACCTTAGCAACAACAAGCGATGAACAAACCTACAAGCCCAGTGTTCCTGANATACAGCTGNNAAACATTTTCACACAGCAGTGTCNACTCTGACCAACGGACACGCACATNACNCACCTNTACAAGTTATACCACATATNAGACAACCACGAAACCANAACACAACAAAAACCNCGCGCATTTNGTTGCTGCACGCGCACAGNCTTTACTTCCCCCTANCAGTCGAGGGC]
[+] EMBL BX617145 [TGCGATGGTGTATGTGTTCCAGGCCTGAGCCCTGCTTTGCAAACGGGCAAATCAAGAAAACATTTAACATTAGAAAAAGATTAAAACAAGAAAACAACAACACACAACCAGAAACGAAAAGTGCAACAACTCCTAAAAATATGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGATAGAGAGAAAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAAAGAGAGAGAAAGAGAGAGAGAGTGGAGGGAACAGAATAAGGCAAGGACTCAAACTCTGTTCAATTATGTTTTTCCCATTTTTTCCCCTCTCTTCTCTATGCGCGTAATCTTCGGCTGCCCGAATGCCCCGATTCAAC GGAACAAAATTTTGAGGTTATGTTGGCGTTCTGCT ]
[+] EMBL BX618320 [ TTAACATTAGAAAAAGATTAAAACAAGAAAACAACAACACACAACCAGAAACGAAAAGTGCAACAACTCCTAAAAATATGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGATAGAGAGAAAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAAAGAGAGAGAAAGAGAGAGAGAGTGGAGGGAACAGAATAAGGCAAGGACTCAAACTCTGTTCAATTATGTTTTTCCCATTTTTTCCCCTCTCTTCTCTATGCGCGTAATCTTCGGCTGCCCGAATGCCCCGATTCAAC GGAACAAAATTTTGAGGTTATGTTGGCGTTCTGCTTCGGCAGCTCGGAG GACAACTGGC GCCTGGAGGGGTCTTTTCCTAAC GCTACTGCTTCGCTACGTCCACGTCCACGTTCC GGAGCAGTGGATTC GCACACC GGCCCAGTGAGCTTTGG TTGGCCAATGGTG TTTTGCAA TG GTGTGCGTTTTGCTG TTGT TGTTGT TGT TGTTTTGTCGC TGTCGGC G CAGCAGCAGTTGCGGTGGCTGAC TGTGGTCGGGACGATCGTTGGCGCTGCG CCGTGTTGGATAC T GGA TGTCGATGTTTTCTAA ATGTAA TGGGTCCAAA TTCGTGTAGATGTG TGTATGTA TG TGTGCTTG TGAGCGCGTGTGT GTGTGCG AGTGTGAGTGCGTGTGTTA GCGAAA TTGGGAACGAGCGGAACCGAACCGAGCAGACGCGGTGTGTACGTTGGAAGCGAA ACGGCTGAAC GG AAGGCTGG CGG TGCATTGGTGCAA GATACG AAACTATTGCAAACATCCT TAAA TCTA ]
[+] EMBL BM635647 [ ccgAAGAAAACAACAACACACAACCAGAAACGAAAAGTGCAACAACTCCTAAAAATATGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGATAGAGAGAAAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAAAGAGAGAGAAAGAGAGAGAGAGTGGAGGGAACAGAATAAGGCAAGGACTCAAACTCTGTTCAATTATGTTTTTCCCATTTTTTCCCCTCTCTTCTCTATGCGCGTAATCTTCGGCTGCCCGAATGCCCCGATTCAAC GGAACAAAATTTTGAGGTTATGTTGGCGTTCTGCTTCGGCAGCTCGGAG GACAACTGGC GCCTGGAGGGGTCTTTTCCTAAC GCTACTGCTTCGCTACGTCCACGTCCACGTTCC GGAGCAGTGGATTC GCACACC GGCCCAGTGAGCTTTGG TTGGCCAATGGTG TTTTGCAA TG GTGTGCGTTTTGCTG TTGT TGTTGT TGT TGTTTTGTCGC TGTCGGC G CAGCAGCAGTTGCGGTGGCTGAC TGTGGTCGGGACGATCGTTGGCGCTGCG CCGTGTTGGATAC TGGGA TGTCGATGTTTTCTAA ATGTAA TGGGTCCAAATTTCGTGTAGATGTG TGTATGTA TG TGTGCTTG TGAGCGCGTGTGT GTGTGCG AGTGTGAGTGCGTGTGTTAC CGAAA TTGGGAACGAGCG ]
[+] EMBL AL693661 [ ccGAGGGNTAGAAAGAAAGAGAGAGAAAGAGAGAGAGAGTGGAGGGAACAGAATAAGGCAAGGACTCAAACTCTGTTCAATTATGTTTTTCCCATTTTTTCCCCTCTCTTCTCTATGCGCGTAATCTTCGGCTGCCCGAATGCCCCGATTCAAC GGAACAAAATTTTGAGGTTATGTTGGCGTTCTGCTTCGGCAGCTCGGAG GACAACTGGC GCCTGGAGGGGTCTTTTCCTAAC GCTACTGCTTCGCTACGTCCACGTCCACGTTCC GGAGCAGTGGATTC GCACACC GGCCCAGTGAGCTTTGG TTGGCCAATGGTG TTTTGCAA TG GTGTGCGTTTTGCTG TTGT TGTTGT TGT TGTTTTGTCGC TGTCGGC GCCAGCAGCAGTTGCGGTGGCTGAC TGTGGTCGGGACGATCGTTGGCGCTGCGCCCGTGTTGGATAC T GGA TGTCGATGTTTTCTAA ATGTAA TGGGTCCAAA TTCGTG ]
[+] EMBL AL931453 [ tAAGAGAGAGAAAGAGAGAGAGAGTGGAGGGAACAGAATAAGGCAANGACTCAAACTCTGTTCAATTATGTTTTTCCCATTTTTTCCCCTCTCTTCTCTATGCGCGTAATCTTCGGCTGCCCGAATGCCCCGATTCAACTGGAACAAAATTTTGAGGTTATGTTGGCGTTCTGCTTCGGCAGCTCGGAGTGACAA TGGCTGCCT GAGGGGTCTTTTCCTAACTGCTACTGCTTCGCTACGTCCACGTCCACGTTCCTGGAGCAGTGGATTCTGCACACCTGGCCCAGTGAGCTTTGGTTTGGCCAATGGTGTTTTTGCAATTGNGTGTGCGTTTTGCTGTTTGTATGTTGTATGTATTGTTTGTCGCTTGTCGGCTG CAGCAGCAGTTGCGGTGGCTGACTTGTGGTCGGGACGATCGTTGGCGCTGCG CCGTGTTGGATACTT GGATTGTCGATGTTTTCTAACATGTAATTGGGTCCAAA TTCGTGTA ATGTGTTGTATGTATTGTTGTGCTTGTTGAGCGCGTGTGTNGTGTGCGCACTGTGAGTGCGTGTGTTACGCGAAACTNGGGAACGAGCGGAACCGAACCGAGCAGACGCGGTGTGTACGTTGGAAGCGAACACGGCTGAACTGGNANGGCTGGCCGGTTGCATTGGTGCAACGATACGCCAACTATTGCAAACATCCTCTAAACTCTAGCCAAACCTTAGCAACAACAAGCGATGAACAAACCTACAAGCCCAGTGTTCCTGANATACAGCTGNNAAACATTTTCACACAGCAGTGTCNACTCTGACCAACGGACACGCACATNACNCACCTNTACAAGTTATACCACATATNAGACAACCACGAAACCANAACACAACAAAAACCNCGCGCATTTNGTTGCTGCACGCGCACAGNCTTTACTTCCCCCTANCAGTCGAGGGC]
[+] EMBL BM598595 [ CCGGGAGGGGTCTTTTCCTAAC GCTACTGCTTCGCTACGTCCACGTCCACGTTCC GGAGCAGTGGATTC GCACACC GGCCCAGTGAGCTTTGG TTGGCCAATGGTG TTTTGCAA TG GTGTGCGTTTTGCTG TTGT TGTTGT TGT TGTTTTGTCGC TGTCGGC G CAGCAGCAGTTGCGGTGGCTGAC TGTGGTCGGGACGATCGTTGGC ]
consensusID : consensus_7471#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence
[CGTGGGCGGACGCGTGGGGCGCGTAATCTCCGGCTGCCCGAATGCCCCGATTCAACGGAACAAAATTTTGAGGTTATGTTGGCGTTCTGCTTCGGCAGCTCGGATGACAACTGGCGTCTGGAGGGGTCTTTTCCTAACGCTACTGCTTCGCTACGTCCACGTCCACGTTCCGGAGCAGTGGATTCGCACACCGGCCCAGTGAGCTTTGGTTGGCCAATGGTGTTTTGCAATGGTGTGCGTTTTGCTGTTGTTGTTGTTGTTGTTTTGTCGCTGTCGGCGCAGCAGCAGTTGCGGTGGCTGATTGTGGTCGGGACGATCGTTGGCGCTGCGCCGTATTGGATACTGGATGTCGATGTTTTCTAAATGTAATGGGTCCAAATTCGTGTAGATGTGTGTATGTATGTGTGCTTGTGAGCGCGTGTGTGTGTGTGTGTCCGAGTGTGAGTGCGTGTGTTAGCGAAATTGGGAACGAGCGGAACCGAACCGAGCAGACGCGGTGTGTACGTTGGAAGCGAAACGGCTGAACGGAAGGCTGGCG]
[+] EMBL BM654512 [CGTGGGCGGACGCGTGGGGCGCGTAATCTCCGGCTGCCCGAATGCCCCGATTCAACGGAACAAAATTTTGAGGTTATGTTGGCGTTCTGCTTCGGCAGCTCGGATGACAACTGGCGTCTGGAGGGGTCTTTTCCTAACGCTACTGCTTCGCTACGTCCACGTCCACGTTCCGGAGCAGTGGATTCGCACACCGGCCCAGTGAGCTTTGGTTGGCCAATGGTGTTTTGCAATGGTGTGCGTTTTGCTGTTGTTGTTGTTGTTGTTTTGTCGCTGTCGGCGCAGCAGCAGTTGCGGTGGCTGATTGTGGTCGGGACGATCGTTGGCGCTGCGCCGTATTGGATACTGGATGTCGATGTTTTCTAAATGTAATGGGTCCAAATTCGTGTAGATGTGTGTATGTATGTGTGCTTGTGAGCGCGTGTGTGTGTGTGTGTCCGAGTGTGAGTGCGTGTGTTAGCGAAATTGGGAACGAGCGGAACCGAACCGAGCAGACGCGGTGTGTACGTTGGAAGCGAAACGGCTGAACGGAAGGCTGGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7471#0 TGCGATGGTGTATGTGTTCCAGGCCTGAGCCCTGCTTTGCAAACGGGCAAATCAAGAAAA 60
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 CATTTAACATTAGAAAAAGATTAAAACAAGAAAACAACAACACACAACCAGAAACGAAAA 120
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 GTGCAACAACTCCTAAAAATATGAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGATAGA 180
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 GAGAAAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAAAGAGAGAGAAAGAGAGAGAGA 240
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 GTGGAGGGAACAGAATAAGGCAAGGACTCAAACTCTGTTCAATTATGTTTTTCCCATTTT 300
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 TTCCCCTCTCTTCTCTATGCGCGTAATCTTCGGCTGCCCGAATGCCCCGATTCAACGGAA 360
consensus_7471#1 CGTGGGCGGACGCGTGGGGCGCGTAATCTCCGGCTGCCCGAATGCCCCGATTCAACGGAA 60
* *********** ******************************
consensus_7471#0 CAAAATTTTGAGGTTATGTTGGCGTTCTGCTTCGGCAGCTCGGAGGACAACTGGCGCCTG 420
consensus_7471#1 CAAAATTTTGAGGTTATGTTGGCGTTCTGCTTCGGCAGCTCGGATGACAACTGGCGTCTG 120
******************************************** *********** ***
consensus_7471#0 GAGGGGTCTTTTCCTAACGCTACTGCTTCGCTACGTCCACGTCCACGTTCCGGAGCAGTG 480
consensus_7471#1 GAGGGGTCTTTTCCTAACGCTACTGCTTCGCTACGTCCACGTCCACGTTCCGGAGCAGTG 180
************************************************************
consensus_7471#0 GATTCGCACACCGGCCCAGTGAGCTTTGGTTGGCCAATGGTGTTTTGCAATGGTGTGCGT 540
consensus_7471#1 GATTCGCACACCGGCCCAGTGAGCTTTGGTTGGCCAATGGTGTTTTGCAATGGTGTGCGT 240
************************************************************
consensus_7471#0 TTTGCTGTTGTTGTTGTTGTTGTTTTGTCGCTGTCGGCGCAGCAGCAGTTGCGGTGGCTG 600
consensus_7471#1 TTTGCTGTTGTTGTTGTTGTTGTTTTGTCGCTGTCGGCGCAGCAGCAGTTGCGGTGGCTG 300
************************************************************
consensus_7471#0 ACTGTGGTCGGGACGATCGTTGGCGCTGCGCCGTGTTGGATACTGGATGTCGATGTTTTC 660
consensus_7471#1 ATTGTGGTCGGGACGATCGTTGGCGCTGCGCCGTATTGGATACTGGATGTCGATGTTTTC 360
* ******************************** *************************
consensus_7471#0 TAAATGTAATGGGTCCAAATTCGTGTAGATGTGTGTATGTATGTGTGCTTGTGAGCGCGT 720
consensus_7471#1 TAAATGTAATGGGTCCAAATTCGTGTAGATGTGTGTATGTATGTGTGCTTGTGAGCGCGT 420
************************************************************
consensus_7471#0 GTGTGTGTG------CGAGTGTGAGTGCGTGTGTTACGCGAAATTGGGAACGAGCGGAAC 774
consensus_7471#1 GTGTGTGTGTGTGTCCGAGTGTGAGTGCGTGTGTTA-GCGAAATTGGGAACGAGCGGAAC 479
********* ********************* ***********************
consensus_7471#0 CGAACCGAGCAGACGCGGTGTGTACGTTGGAAGCGAAACGGCTGAACGGAAGGCTGGCGG 834
consensus_7471#1 CGAACCGAGCAGACGCGGTGTGTACGTTGGAAGCGAAACGGCTGAACGGAAGGCTGGCG- 538
***********************************************************
consensus_7471#0 TGCATTGGTGCAAGATACGAAACTATTGCAAACATCCTTAAATCTAGCCAAACCTTAGCA 894
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 ACAACAAGCGATGAACAAACCTACAAGCCCAGTGTTCCTGANATACAGCTGNNAAACATT 954
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 TTCACACAGCAGTGTCNACTCTGACCAACGGACACGCACATNACNCACCTNTACAAGTTA 1014
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 TACCACATATNAGACAACCACGAAACCANAACACAACAAAAACCNCGCGCATTTNGTTGC 1074
consensus_7471#1 ------------------------------------------------------------
consensus_7471#0 TGCACGCGCACAGNCTTTACTTCCCCCTANCAGTCGAGGGC 1115
consensus_7471#1 -----------------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||