These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7472#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1015 fasta sequence [GGTATGGTTTCGCAGCCCAGATGGTGGCCAGCGGGCTGATCGGGGCAGCCTTGAAGATTCCGGTGAAGTTGATGACCAGATACGGCGTCCAGGCCATGAACCAGAGCGAGATGGTGACCAGGGCGACCTTGGCCAGCTTCATCTCGGTGCTGGTGTTCTGGGCTTCCTGCGTACGCACGAGGCGACGTTCATCTTCTTGGCCTGCTCGCGCATGTTCTTCTCGTGAGCGGACACAGCCTTCAGGATGAAGGTGTACGAGTAGATGATGGTCAGCAGCGGCAGCCAGTACACGAAGATGGCGTAGATGATGATGTACGAGCGGCTCAGCCACGTCTGGGTCAGGTAGTCGGTCCCGCA-GCGGTCATGTTGCCCTCCGGCACGTATCGGTTCCATCCGAACAGCGGGGCCAGAGTCCAGAACAGCGCGAACACCCACACGCCCAGAATGCGCA-CAGGGGCACCGTTGTTGGTCATCGGCTTGCCCGCGAGACCCTTCACGATGACGTTGTAACGGTCGAAGGCAATCATCGTCATGGTCCAGATCGAGGCACAGCCGAACAGCGATCCCAGCATGGCGTACAGCTCGCACGCGAACGGGCCAAAGGTCCAGGTCTCGTGCCAGCAGTTGATCACCATCGGCGGGCCCATCGTGAACATCATGAAGAAATCGGAGAAGGCCAGATTGACCACCAGCAAGTTGGAGGGGGTTCGGAGTGACTTGGTGTTGGTGAAGATGTACATCACACAACCGTTACCGGTCATCGAGATCATTCCGTGCATGAAGATGGCAAAACCTAGGATCGAGTGCCACAGCGGGTTCATGGGCGGGAACTGATTCCAGTGGGGATGCACCATGTGGAGCATCTCTGGTGGGACCTTATCCACCACCGACATGTTGCCACCGCTCTGCGTCCAGGCATCGAAGTGAGGTTCCACAAACGCAGCCATGTCTCAAATGCGCAAATACTAAAAATTGAATCCTTCTATCTGCGACACAGTTCCGGACGCGTGGGCGG] [+] EMBL CNS08X89 [GGTATGGTTTCGCAGCCCAGATGGTGGCCAGCGGGCTGATCGGGGCAGCCTTGAAGATTCCGGTGAAGTTGATGACCAGATACGGCGTCCAGGCCATGAACCAGAGCGAGATGGTGACCAGGGCGACCTTGGCCAGCTTCATCTCGGTGCTGGTGTTCTGGGCTTCCTGCGTACGCACGAGGCGACGTTCATCTTCTTGGCCTGCTCGCGCATGTTCTTCTCGTGAGCGGACACAGCCTTCAGGATGAAGGTGTACGAGTAGATGATGGTCAGCAGCGGCAGCCAGTACACGAAGATGGCGTAGATGATGATGTACGAGCGGCTCAGCCACGTCTGGGTCAGGTAGTCGGTCCCGCA GCGGTCATGTTGCCCTCCGGCACGTATCGGTTCCATCCGAACAGCGGGGCCAGAGTCCAGAACAGCGCGAACACCCACACGCCCAGAATGCGCA CAGGGGCACCGTTGTTGGTCATCGGCTTGCCCGCGAGACCCTTCACGATGACGTTGTAACGGTCGAAGGCAATCATCGTCATGGTCCAGATCGAGGCACAGCCGAACAGCGATCCCAGCATGGCGTACAGCTCGCACGCGAACGGGCCAAAGGTCCAGGTCTCGTGCCAGCAGTTGATCACCATCGGCGGGCCCATCGTGAACATCATGAAGAAATCGGAGAAGGCCAGATTGACCACCAGCAAGTTGGAGGGGGTTCGGAGTGACTTGGTGTTGGTGAAGATGTACATCACACAACCGTTACCGGTCATCGAGATCATTCCGTGCATGAAGATGGCAAAAC ] [-] EMBL BM619659 [ TAGTCGGTTCCGCAGGCGGTCATGTTGCCCTCCGGCACGTATCGGTCTCATCCGAACAGCGGGGCCAGAGTCCAGAACAGCGCGAACACCCACACGCCCAGAATGCGCAGCA GGGCACCGTTGTTGGTCATCGGCTTGCCGGCGAGACCCTTCACGATGACGTTGTAACGGTCAAAGGCAATCATCGTCATGGTCCAGATCGAGGCACAGCCGAACAGCGATCCCAGCATGGCGTACAGCTCGCACGCGAACGGGCCAAAGGTCCAGGTCTCGTGCCAGCAGTTGATCACCATCGGCGGGCCCATCGTGAACATCATGAAGAAATCGGAGAAGGCCAGATTGACCACCAGCAAGTTGGAGGGGGTTCGGAGTGACTTGGTGTTGGTGAAGATGTACATCACACAACCGTTACCGGTCATCGAGATCATTCCGAGCATGAAGATGGCAAAACCTAGGATCGAGTGCCACAGCGGGTTCATGGGCGGGAACTGATTCCAGTGGGGATGCACCATGTGGAGCATCTCTGGTGGGACCTTATCCACCACCGACATGTTGCCACCGCTCTGCGTCCAGGCATCGAAGTGAGGTTCCACAAACGCAGCCATGTCTCAAATGCGCAAATACTAAAAATTGAATCCTTCTATCTGCGACACAGTTCCGGACGCGTGGGCGG] consensusID : consensus_7472#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 964 fasta sequence [CCGCGGACGCGTGGGCGCCCCCGACACCGACGGTGGCCGTTTGTCAAACCGCTAACCTCAAAAGGTTCTTTTCTAGGAGTGTGTTTCACTTATTTACACGTGTTTCAGGATGGCCCCAAAGGAAACGAAGGCCGCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCCTGCTAACGGCCGGACTGTACCGTGCGGTGCGCTCCCGGATGGTCAAGACGCGTCTGCCCCTCTCCGCCAAGACGGTAGATCCGGCGAAGGTGAAGCCGAAGAAGCCCGTCACCATCGTGAAGAAGATTGGCGGTGCGAAGAACGGCGGCGAGCGTACGGTGCTGCTGCGCAAGAACAAGGCCAACCTGCCGACG-AAGCGCTTCGCCCACAAGCGCCCGGCCAAGAGGTGCTTCCGCAACCACAAGCGCAACATCCGCAAGTCGCTGAAGCCCGGCAAGGTGCTGATCCTGCTCGCCGGCCGTCATAAGGGAAAGCGAGTGGTGCTGCTGAAGACCCTCAAGACCGGACTGCTCCTGGTGACCGGTCCGTTCCAGCTCAACTCCTGCCCGATGCGCCGTATCGCGCAGAACTACGTTATCGCGCAAGGAGTTCAAGTACGTGCCGACGGAGCAGCGCAAGGCGGACCAGAAGACGGTCGACACCGCGGTGATGGCCGCCATCAAGGCCCACCCGGA-GGCAAGCTGATTCAGCGCTACCTGAAGTCGATGTTCTCGCTGCGCACCAACATGTTCCCGCACCGTATGAAGTTCTAAGTTGGTTGGAATTCGGGTGAGGAAGAAGGTGTGAGTTTGAGTTCGTACGCGCGCGTGTAAACAAAGTGCTACCACCACCCCCAGCCATTGTGTCGGGCTACACGTATCGAAGGAGCGCGCGGAATATTTACTTTATAACATCCCACGGCTGGATATTGG] [+] EMBL BM585422 [CCGCGGACGCGTGGGCGCCCCCGACACCGACGGTGGCCGTTTGTCAAACCGCTAACCTCAAAAGGTTCTTTTCTAGGAGTGTGTTTCACTTATTTACACGTGTTTCAGGATGGCCCCAAAGGAAACGAAGGCCGCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCCTGCTAACGGCCGGACTGTACCGTGCGGTGCGCTCCCGGATGGTCAAGACGCGTCTGCCCCTCTCCGCCAAGACGGTAGATCCGGCGAAGGTGAAGCCGAAGAAGCCCGTCACCATCGTGAAGAAGATTGGCGGTGCGAAGAACGGCGGCGAGCGTACGGTGCTGCTGCGCAAGAACAAGGCCAACCTGCCGACG AAGCGCTTCGCCCACAAGCGCCCGGCCAAGAGGTGCTTCCGCAACCACAAGCGCAACATCCGCAAGTCGCTGAAGCCCGGCAAGGTGCTGATCCTGCTCGCCGGCCGTCATAAGGGAAAGCGAGTGGTGCTGCTGAAGACCCTCAAGACCGGACTGCTCCTGGTGACCGGTCCGTTCCAGCTCAACTCCTGCCCGATGCGCCGTATCGCGCAGAACTACGTCATC ] [+] EMBL BM643708 [ ccgCCGACGGTGGCCGTTTGTCAAACCGCTAACCTCAAAAGGTTCTTTTCTAGGAGTGTGTTTCACTTATTTACACGTGTTTCAGGATGGCCCCAAAGGAAACGAAGGCCGCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCCTGCTAACGGCCGGACTGTACCGTGCGGTGCGCTCCCGGATGGTTAAGACGCGTCTGCCCCTCTCCGCCAAGACGGTAGATCCGGCGAAGGTGAAGCCGAAGAAGCCCGTCACCATCGTGAAGAAGATTGGCGGTGCGAAGAACGGCGGCGAGCGTACGGTGCTG ] [+] EMBL CNS098LQ [ TGTGTTTCACTTATTTACACGTGTTTCAGGATGGCCCCAAAGGAAACGAAGGCCGCCGCTCCGGCCAAGGCTGTTAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCCTGCTAACGGCCGGACTGTACCGTGCGGTGCGCTCCCGGATGGTCAAGACGCGTCTGCCCCTCTCCGCCAAGACGGTAGATCCGGCGAAGGTGAAGCCGAAGAAGCCCGTCACCATCGTGAAGAAGATTGGCGGTGCGAAGAACGGCGGCGAGCGTACGGTGCTGCTGCGCAAGAACAAGGCCAACCTGCCGACG AAGCGCTTCGCCCACAAGCGCCCGGCCAAGAGGTGCTTCCGCAACCACAAGCGCAACATCCGCAAGTCGCTGAAGCCCGGCAAGGTGCTGATCCTGCTCGCCGGCCGTCATAAGGGAAAGCGAGTTGTGCTGCTGAAGACCCTCAAGACCGGACTGCTCCTGGTGACCGGTCCGTTCCAGCTCAACTCCTGCCCGATGCGCCGTATCGCGCAGAACTACGTTATCGCGCAAGGAGTTCAAGTACGTGCCGACGGAGCAGCGCAAGGCGGACCAGAAGACGGTCGACACCGCGGTGATGGCCGCCATCAAGGCCCACCCGGA GGCAAGCTGATTCAGCGCTACCTGAAGTCGATGTTCTCGCTGCGCACCAACATGTTCCCGCACCGTATGAAGTTCTAAGTTGGTTGGAATTCGGGTGAGGAAGAAGGTGTGAGTTTGAGTTCGTACGCGCGCGTGTAAACAAAGTGCTACCACCACCCCCAGCCATTGTGTCGGGCTACACGTATCGAAGGAGCGCGCGGAATATTTACTTTATAACATCCCACGGCTGGATATTGG] [-] EMBL CNS098LR [ AAGAACAAGGCCAACCTGCCGACGAAAGCG TTCGCCCACAAGCGCCCGGCCAAGAGGTGCTTCCGCAACCACAAGCGCAACATCCGCAAGTCGCTGAAGCCCGGCAAGGTGCTGATCCTGCTCGCCGGCCGTCATAAGGGAAAGCGAGTGGTGCTGCTGAAGACCCTCAAGACCGGACTGCTCCTGGTGACCGGTCCGTTCCAGCTCAACTCCTGCCCGATGCGCCGTTTCGCGCAGAACTACGTTTTCGCGCAAGGAGTTCAAGTACGTGCCGACGGAGCAGCGCAAGGCGGACCAGAAGACGGTCGACACCGCGGTGATGGCCGCCATCAAGGCCCACCCGGAGGGCAAGCTGATTCAGCGCTACCTGAAGTCGATGTTCTC CTGCGCACCAACATGTTCCCGCACCGTATGAAGTTCTAAGTTGGTTGGAATTCGGGTGAGGAAGAAGGTGTGAGTGTGAGTGCGTACGCGCGCGTGTAAACAAAGTGCTACCACCACCCCC ] consensusID : consensus_7472#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 634 fasta sequence [CAGGCTTAATCAATTTGACGAACCGATNCGAATATAAGCGCTAAAAAGTGGCGTCTAGTAGGTAAAAAGTGTGTCCAAACGATCAGTAGTAGTGTTGCACGATCGCCCTTAGTGGAAGGTGTATGCGACTCCGTCATCTTAATTTGTTGTGAGAACAAAGCGTTCTCCCCCACCGCATCAGGACATTCAACTTTGTGCGCGTGCATCGTGTGTTGCAGGACATCCAGCTGGTAAGCGACTCCCACTTCAACAGGAGCATCAGCATCATCATCAAAAAAAACATCCAACACCATGAACGAAACGTAAACGTGCTGGACGCGTGGCTTCGNGAACCAACTCTCCGCTGCACGTCGGCGAAAGCAGTCAGAACGAGTGATCCCGCCGTGNAGGAGTGGCCGGTTCAANTGGGNAAACGAGTCCCGACANGCGGATGGTGTCTAGGGACGCACTCATGGAATTTGNCTCTAAGGCAGCGCGCGGAACGAANCANTAACACAGACACACTTACCATAGCCAAGCATCCAACGAGTAGCGCTGCGATGGATCTTCATGCTTCTGAGCCAGAAGACACCANTGCTGAACNCTGTACTCAANCTCAGACCCGTCCGGTGTGGCACAGATGGCGCGGAATCAC] [+] EMBL AL697547 [CAGGCTTAATCAATTTGACGAACCGATNCGAATATAAGCGCTAAAAAGTGGCGTCTAGTAGGTAAAAAGTGTGTCCAAACGATCAGTAGTAGTGTTGCACGATCGCCCTTAGTGGAAGGTGTATGCGACTCCGTCATCTTAATTTGTTGTGAGAACAAAGCGTTCTCCCCCACCGCATCAGGACATTCAACTTTGTGCGCGTGCATCGTGTGTTGCAGGACATCCAGCTGGTAAGCGACTCCCACTTCAACAGGAGCATCAGCATCATCATCAAAAAAAACATCCAACACCATGAACGAAACGTAAACGTGCTGGACGCGTGGCTTCGNGAACCAACTCTCCGCTGCACGTCGGCGAAAGCAGTCAGAACGAGTGATCCCGCCGTGNAGGAGTGGCCGGTTCAANTGGGNAAACGAGTCCCGACANGCGGATGGTGTCTAGGGACGCACTCATGGAATTTGNCTCTAAGGCAGCGCGCGGAACGAANCANTAACACAGACACACTTACCATAGCCAAGCATCCAACGAGTAGCGCTGCGATGGATCTTCATGCTTCTGAGCCAGAAGACACCANTGCTGAACNCTGTACTCAANCTCAGACCCGTCCGGTGTGGCACAGATGGCGCGGAATCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7472#0 GGTATGGTTTCGCAGCCCAGATGGTGGCCAGCGGGCTGATCGGGGCAGCCTTGAAGATTC 60 consensus_7472#2 ------------------------------------------------------------ consensus_7472#1 ------------------------------------------------------------ consensus_7472#0 CGGTGAAGTTGATGACCAGATACGGCGTCCAGGCCATGAACCAGAGCGAGATGGTGACCA 120 consensus_7472#2 ------------------------------------------------------------ consensus_7472#1 ---------------------------CCGCGGACGCGTGGGCGCCCCCGACACCGACGG 33 consensus_7472#0 GGGCGACCTTGGCCAGCTTCATCTCGGTGCTGGTGTTCTGGGCTTCCTGCGTACGCACGA 180 consensus_7472#2 ------------------------------------------------------------ consensus_7472#1 TGGCCGTTTGTCAAACCGCTAACCTCAAAAGGTTCTTTTCTAGGAGTGTGTTTCACTTAT 93 consensus_7472#0 GGCGACGTTCATCTTCTTGGCCTGCTCGCGCATGTTCTTCTCGTGAGCGGACACAGCCTT 240 consensus_7472#2 -----------------------------------------------CAGGCTTAATCAA 13 consensus_7472#1 TTACACGTGTTTCAGGATGGCCCCAAAGGAAACGAAGGCCGCCGCTCCGGCCAAGGCTGT 153 * * * consensus_7472#0 CAGGATGAAGGTGTACGAGTAGATGATGGTCAGCAGCGGCAGCCAGTACACGAAGATGGC 300 consensus_7472#2 TTTGACGAACCGATNCGAATATA-AGCGCTAAAAAGTGGCGTCTAGTAGGTAAAAAGTGT 72 consensus_7472#1 TAAGAAGGTCCGAAAGGCACCGAAAAAGGTGCAGAAGGTCAGCAAGTACCCGGCCAGCCT 213 ** * * * * * * * * * **** * consensus_7472#0 GT--AGATGATGATGTACGA----GCGGCTCAGCCACGTCTGGGTCAGGTA-GTCGGTCC 353 consensus_7472#2 GTCCAAACGATCA-GTAGTA----GTGTTGCACGATCGCCCTTAGTGGAAG-GTGTATGC 126 consensus_7472#1 GC--TAACGGCCGGACTGTACCGTGCGGTGCGCTCCCGGATGGTCAAGACGCGTCTGCCC 271 * * * * * * * ** * ** * consensus_7472#0 CGCAGCGGTCAT---GTTGCCCTCCGGCACG--TATCGGTTCCATCCGAACAGCGGGGCC 408 consensus_7472#2 GACTCCG-TCAT---CTTAATTTGTTGTGAG--AA-CAAAGCGTTCTCCCCCACCGCATC 179 consensus_7472#1 CTCTCCGCCAAGACGGTAGATCCGGCGAAGGTGAAGCCGAAGAAGCCCGTCACCATCGTG 331 * ** * * * * * * * * * consensus_7472#0 AGAGTCCAGAACAGCGCGAACACCCACA-CGCCCAGAATGCGCACAGGGGCACCGTTGTT 467 consensus_7472#2 AGGACATTCAACTTTGTG--------CG-CGTGCATCGTGTGTTGCAGGACATC-CAGCT 229 consensus_7472#1 AAGAAGATTGGCGGTGCGAAGAACGGCGGCGAGCGTACGGTGCTGCTGCGCAAGAACAAG 391 * * * * * ** * * * * ** consensus_7472#0 GGTCATCGGCTTGCCCGCGAGACCCTTCACGATGACGTTGTAACGGTCGAAGGCAATCAT 527 consensus_7472#2 GGTAAGCGACT--CCCACTTCAACAGGAGCATCAGCATCATCATCAAAAAAAACATCCAA 287 consensus_7472#1 GCCAACCTGCC--GACGAAGCGCTTCGCCCACAAGCGCC-CGGCCAAGAGGTGCTTCCGC 448 * * * * * * * * * consensus_7472#0 CGTCATGGTCCAGATCGAGGCACAGCCGAACAGCGATCCCAGCATGGCGTACAGCTCGCA 587 consensus_7472#2 CACCATGAACGAAACGTAAACGTGCTGGACGCGTGGCTTCGNGA--ACCAACTCTCCGC- 344 consensus_7472#1 AACCACAAGCGCAAC----ATCCGCAAGTCGCTGAAGCCCGGCAAGGTGCTGATCCTGCT 504 ** * * * * * ** consensus_7472#0 CGCGAACGGGCCAAAG-GTCCAGGTCTCGTGCCAGCA--GTTGATCACCATCGGCGGGCC 644 consensus_7472#2 TGCACGTCGGCGAAAGCAGTCAGAACGAGTGATCCC---GCCGTGNAGGAGTGGCCGGTT 401 consensus_7472#1 CGCCGGCCGTCATAAGGGAAAGCGAGTGGTGCTGCTGAAGACCCTCAAGACCGGACTGCT 564 ** * * *** *** * * * ** * consensus_7472#0 CATCGTGAACATCATGAAGAAATCGGAGAAGGCCAGATTGACCACCAGCAAGTTGGAGGG 704 consensus_7472#2 CAAN-TGGGNA----AACGAGTCCCGACANGCGGATGGTGTCTAGGGACGCACTCATGGA 456 consensus_7472#1 CCTGGTGACCGGTCCGTTCCAGCTCAACTCCTGCCCGATGCGCCGTATCGCGCAGAACTA 624 * ** * ** * consensus_7472#0 GGTTCGGAGTGACTTGGT----GTTGGTGAAGATGTAC-ATCACA-----CAACCGTTAC 754 consensus_7472#2 ATTTGNCTCTAAGGCAGC----GCGCGGAACGAANCANTAACACA-----GACACACTTA 507 consensus_7472#1 CGTTATCGCGCAAGGAGTTCAAGTACGTGCCGACGGAGCAGCGCAAGGCGGACCAGAAGA 684 ** * * * * ** * * * ** * consensus_7472#0 CGGTCATCGAGATCATTCCGTGCATGAAGATGGCAAAACCT-AGGA-------TCGAGTG 806 consensus_7472#2 CCATAGCCAAGCATCCAACGAGTAGCGCTGCGATGGATCTTCATGC-------TTCTGAG 560 consensus_7472#1 CGGTCGACACCGCGGTGATGGCCGCCATCAAGGCCCACCCGGAGGCAAGCTGATTCAGCG 744 * * * * * * * * * * * * consensus_7472#0 CCACAGCGGGTTCATGGGCGGGAACTG-ATTCCAGTGGGGATGCACCATGTGGAGCAT-- 863 consensus_7472#2 CCAGAA-GACACCANTGCTGAACNCTGTACTCAANCTCAGACCCGTCCGGTGTGGCAC-- 617 consensus_7472#1 CTACCTGAAGTCGATGTTCTCGCTGCGCACCAACATGTTCCCGCACCGTATGAAGTTCTA 804 * * * * * * * ** * consensus_7472#0 CTCTGGTGGGACCTTATCC-ACCACCGACATGTTGCCACCGCTCTGCGTCCAGGCATCGA 922 consensus_7472#2 AGATGGCGCGGAATCAC------------------------------------------- 634 consensus_7472#1 AGTTGGTTGGAATTCGGGTGAGGAAGAAGGTGTGAGTTTGAGTTCGTACGCGCGCGTGTA 864 *** * * consensus_7472#0 AGTGAGGTTCCACAAACGCAGCCATGTCTCAAATGCGCAAATACTAAAAATTGAATCCTT 982 consensus_7472#2 ------------------------------------------------------------ consensus_7472#1 AACAAAGTGCTACCACCACCCCCAGCCATTGTGTCGGGCTACACGTATCGAAGGAGCGCG 924 consensus_7472#0 CTATCTGCGACACAGTTCCGGACGCGTGGGCGG------- 1015 consensus_7472#2 ---------------------------------------- consensus_7472#1 CGGAATATTTACTTTATAACATCCCACGGCTGGATATTGG 964 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||