These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1466 fasta sequence [CCTGGTGTACACGCTTTATGATAAGCTTCATCACTCGACGGCGCACTCGATGGCCAATTTGGTATTGGTGGTCTTGTTCACAAACTTCAGCTAGGATGCATTACGTGATCTAAGCGACCGACTACCTGTTAAACGCATGAAAGCATTCGGCTAAGTTTCCGAGTTTCTGAGCGTACAACGGAATAAGGGCTCCCGGAGCACAACAGCGGCACTGTGTCTATATTAACTTTACTTAATTATCATCATCATCATAGTCTCCGGGGTCGTCATATTGTAGGAAATCACCGTGACTTCTATCACTAGGCAGCGTTAAAATACCATTTAGAACTGCATATCCAAGCATTGCCACGGTGGCCACTAATCCTGACAGAATGTAACGCTTTCGCCTTTCCTTCGGACCATCGTCCGGGTCTTGCTGCTGACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTGGCCGAGGATGATGAGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTGCCAGCATGTCCGGATGCGGTAAAACTAT-TAAAGCCTTCCTTCGCAAAGTATGTCGCCGTCGTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAAAACCGACAGATACCCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTCCAGCCTCGCAGCTACCCAG-TTTAGGCAAGTTTTGGCGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTTCTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAATTGGAA--TGCG-TTCGCATACACCGTGCGCGTGGTGTCGACGTTCTTCGGATCGCCCCACAGCATGTACATGAAGTAGGGGTGCAAATTCTCCTGCACATACTGCATGTACCCGTTGATCTGTGTAGCGTGCTGGCTACTTTCGTCTGCCACGTTTTCCGCCCTGTCCGTCGCGGTCGGTGGCCCTATCCCGGCCGCTACCAGATGCTCAACGATCC-GGCCATAGCCGGCGATCTTCTTGCCATCCGCTATCATGTACGGCAGCATGCCGTTGGGCGAGCTGAAGGGATTCCCATTAAAGTTGACCGTTACTTTCGCGCCGGAAAATTTCAGATATGCCAGCAGTCGACTGCATTCGTAGTCAATCGATGGAAGTCCCCACTCGCCACGGTACACAAATATTTCCATTTCTCACTAGCTTTAGAGCACTCACCACCAGCTGCTGTGTATTTTACCCGCTTTACCAGTCTTTATTTTACCGTGCGGTTTACCGTCCTGCAGAAATGTGTGTTTACGCGTTGTGCAACCGGACGCGTGGGCGGACGCGTGGGCGG] [+] EMBL CNS08QI2 [CCTGGTGTACACGCTTTATGATAAGCTTCATCACTCGACGGCGCACTCGATGGCCAATTTGGTATTGGTGGTCTTGTTCACAAACTTCAGCTAGGATGCATTACGTGATCTAAGCGACCGACTACCTGTTAAACGCATGAAAGCATTCGGCTAAGTTTCCGAGTTTCTGAGCGTACAACGGAATAAGGGCTCCCGGAGCACAACAGCGGCACTGTGTCTATATTAACTTTACTTAATTATCATCATCATCATAGTCTCCGGGGTCGTCATATTGTAGGAAATCACCGTGACTTCTATCACTAGGCAGCGTTAAAATACCATTTAGAACTGCATATCCAAGCATTGCCACGGTGGCCACTAATCCTGACAGAATGTAACGCTTTCGCCTTTCCTTCGGACCATCGTCCGGGTCTTGCTGCTGACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTGGCCGAGGATGATGAGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTGCCAGCATGTCCGGATGCGGTAAAACTAT TAAAGCCTTCCTTCGCAAAGTATGTCGCCGTCGTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAAAACCGACAGATACCCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTCCAGCCTCGCAGCTACCCAGTTTTCGGCCCGTTTTGGCGTTGTGTTGG ] [+] EMBL CNS08Q14 [ TTTATGATAAGCTTCATCACTCGACGGCGCACTCGATGGCCAATTTGGTATTGGTGGTCTTGTTCACAAACTTCAGCTAGGATGCATTACGTGATCTAAGCGACCGACTACCTGTTAAACGCATGAAAGCATTCGGCTAAGTTTCCGAGTTTCTGAGCGTACAACGGAATAAGGGCTCCCGGAGCACAACAGCGGCACTGTGTCTATATTAACTTTACTTAATTATCATCATCATCATAGTCTCCGGGGTCGTCATATTGTAGGAAATCACCGTGACTTCTATCACTAGGCAGCGTTAAAATACCATTTAGAACTGCATATCCAAGCATTGCCACGGTGGCCACTAATCCTGACAGAATGTAACGCTTTCGCCTTTCCTTCGGACTATCGTCCGGGTCTTGCTGCTGACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTGGCCGAGGATGATGAGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTGCCAGCATGTCCGGATGCGGTAAAACTATATAAAGCCTTCCTTCGCAAAGTATGTCGCCGTCGTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAAAACCGACAGATACCCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTCCAGCCTCGCAGCTACCCAG TTTAGGCAAGTTTTGGCGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTA ] [-] EMBL CNS08QI1 [ GCCACCGCTGGCCGAGGATGATGAGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTGCCAGCATGTCCGGATGCGGTAAAACTAT TAAAGCCTTCCTTCGCAAAGTATGTCGCCGTCGTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAAAACCGACAGATACCCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTCCAGCCTCGCAGCTACCCAG TTTAGGCAAGTTTTGGCGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTTCTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAATTGGAAAGTGCG TTCGCATACACCGTGCGCGTGGTGTCGACGTTCTTCGGATCGCCCCACAGCATGTACATGAAGTAGGGGTGCAAATTCTCCTGCACATACTGCATGTACCCGTTGATCTGTGTAGCGTGCTGGCTACTTTCGTCTGCCACGTTTTCCGCCCTGTCCGTCGCGGTCG ] [-] EMBL CNS08Q13 [ CTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAAAACCGACAGATACCCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTCCAGCCTCGCAGCTACCCAG TTTAGGCAAGTTTTGGCGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTTCTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAATTGGAAT TGCG TTCGCATACACCGTGCGCGTGGTGTCGACGTTCTTCGGATCGCCCCACAGCATGTACATGAAGTAGGGGTGCAAATTCTCCTGCACATACTGCATGTACCCGTTGATCTGTGTAGCGTGCTGGCTACTTTCGTCTGCCACGTTTTCCGCCCTGTCCGTCGCGGTCGGTGGCCCTATCCCGGCCGCTACCAGATGCTCAACGATCCGGGCCATAGCCGGCGATCTTCTTGCCATCCGCTATCATGTACGGCAGCATGCCGTTGGGCGAGCTGAAGGGATTCCCATTAAAGTTGACCGTTACTTTCGCGCCGGAAAATTTCAGATATGCCAGCAGTCGACTGCATTCGTAGTCAATCGATGGAAGTCCCCACTCGCCACGGTACACAAATATTTCCATTTCTCACTAGCTTTAGAGCACTCACCACCAGCTGCTGTGTATTTTACCCGCTTTACCAGTCTTTATTTTACCGTGCGGTTTACCGTCCTGCAGAAAT ] [-] EMBL BX620789 [ GCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCNTCCAGCNTCGCAGCTACCCAG TTTAGGCAGGTTTTGGCGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCAACCAACGATTGCGTGATATCGTTCGTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAATTGGAA TGCGCTTCGCATACACCGTGCGCGTGGTGTCGACGTTCTTCGGATCGCCCCACAGCATGTACATGAAGTAGGGGTGCAAATTCTCCTGCACATACTGCATGTACCCGTTGATCTGTGTAGCGTGCTGGCTACTTTCGTCTGCCACGTTTTCCGCCCTGTCCGTCGCGGTCGGTGGCCCTATCCCGGCCGCTACCAGATGCTCAACGATCC GGCCATAGCCGGCGATCTTCTTGCCATCCGCTATCATGTACGGCAGCATGCCGTTGGGCGAGCTGAAGGGATTCCCATTAAAGTTGACCGTTACTTTCGCGCCGGAAAATTTCAGATATGCCAGCAGTCGACTGCATTCGTAGTCAATCGATGGAAGTCCCCACTCGCCACGGTACACAAATATTTCCATTTCTCACTAGCTTTAGAGCACTCACCACCAGCTGCTGTGTAT ] [-] EMBL BM627151 [ CAGCCTCGCAGCTACCCAG TTTAGGCAGGTTTTGGCGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCAACCAACGATTGCGTGATATCGTTCGTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAATTGGAA TGCGCTTCGCATACACCGTGCGCGTGGTGTCGACGTTCTTCGGATCGCCCCACAGCATGTACATGAAGTAGGGGTGCAAATTCTCCTGCACATACTGCATGTACCCGTTGATCTGTGTAGCGTGCTGGCTACTTTCGTCTGCCACGTTTTCCGCCCTGTCCGTCGCGGTCGGTGGCCCTATCCCGGCCGCTACCAGATGCTCAACGATCC GGCCATAGCCGGCGATCTTCTTGCCATCCGCTATCATGTACGGCAGCATGCCGTTGGGCGAGCTGAAGGGATTCCCATTAAAGTTGACCGTTACTTTCGCGCCGGAAAATTTCAGATATGCCAGCAGTCGACTGCATTCGTAGTCAATCGATGGAAGTCCCCACTCGCCACGGTACACAAATATTTCCATTTCTCACTAGCTTTAGAGCACTCACCACCAGCTGCTGTGTATTTTACCCGCTTTACCAGTCTTTATTTTACCGTGCGGTTTACCGTCCTGCAGAAATGTGTGTTTACGCGTTGTGCAACCGGACGCGTGGGCGGACGCGTGGGCGG] consensusID : consensus_7521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 647 fasta sequence [TCANTAGTCTANGCGTTTTTTAATACCATTTAGANCTGCATATCCANAGCATTCCATCGTTGCCACTAATCCTGACAGAATGTTACGCTTTCGCCTTTCCTTCGGACCATCGTCCGGTTCTTGCTGCTGACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTGCCGAGGATGATGACGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTGCCAGCATGTCCGGATGCGGTAAAACTATTAAAGCCTTCCTTCGCAAAGTATGTCGCCGTCGTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAANAAGCCGACAGATACGCGCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTGCCAGCCTCGCAGCTACCCAGTTTAGGCAAGTTTTGGCAGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTCGTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAAAAGCCTGGGGGCAATCTG] [-] EMBL AL697328 [TCANTAGTCTANGCGTTTTTTAATACCATTTAGANCTGCATATCCANAGCATTCCATCGTTGCCACTAATCCTGACAGAATGTTACGCTTTCGCCTTTCCTTCGGACCATCGTCCGGTTCTTGCTGCTGACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTGCCGAGGATGATGACGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTGCCAGCATGTCCGGATGCGGTAAAACTATTAAAGCCTTCCTTCGCAAAGTATGTCGCCGTCGTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTGTTCGGTAGGGTAAGCTTAAGCAANAAGCCGACAGATACGCGCGTACAGTAAAGCATCCACTTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTGCCAGCCTCGCAGCTACCCAGTTTAGGCAAGTTTTGGCAGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCCTCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTCGTGCGCAGCACGTACTTTCGCGGGCAGTAGAAATTGAACGGAAAAGCCTGGGGGCAATCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7521#0 CCTGGTGTACACGCTTTATGATAAGCTTCATCACTCGACGGCGCACTCGATGGCCAATTT 60 consensus_7521#1 ------------------------------------------------------------ consensus_7521#0 GGTATTGGTGGTCTTGTTCACAAACTTCAGCTAGGATGCATTACGTGATCTAAGCGACCG 120 consensus_7521#1 ------------------------------------------------------------ consensus_7521#0 ACTACCTGTTAAACGCATGAAAGCATTCGGCTAAGTTTCCGAGTTTCTGAGCGTACAACG 180 consensus_7521#1 ------------------------------------------------------------ consensus_7521#0 GAATAAGGGCTCCCGGAGCACAACAGCGGCACTGTGTCTATATTAACTTTACTTAATTAT 240 consensus_7521#1 ------------------------------------------------------------ consensus_7521#0 CATCATCATCATAGTCTCCGGGGTCGTCATATTGTAGGAAATCACCGTGACTTCTATCAC 300 consensus_7521#1 ----------------------------------------------------TCANTAGT 8 ** * consensus_7521#0 TAGGCAGCGTTAAAATACCATTTAGAACTGCATATCCAAGCATTGCCACGGTGGCCACTA 360 consensus_7521#1 CTANGCGTTTTTTAATACCATTTAGANCTGCATATCCANAGCATTCCATCGTTGCCACTA 68 * ** ************* *********** * *** ** ******* consensus_7521#0 ATCCTGACAGAATGTAACGCTTTCGCCTTTCCTTCGGACCATCGTCCGGGTCTTGCTGCT 420 consensus_7521#1 ATCCTGACAGAATGTTACGCTTTCGCCTTTCCTTCGGACCATCGTCCGGTTCTTGCTGCT 128 *************** ********************************* ********** consensus_7521#0 GACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTGGCCG 480 consensus_7521#1 GACCGGTGTGAAAGGTTGTATCATTCCCACTCTTCTCCGATCGCTCGCCACCGCTG-CCG 187 ******************************************************** *** consensus_7521#0 AGGATGATGA-GGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTG 539 consensus_7521#1 AGGATGATGACGGAAGTGTCGTTCGGGCTTCCCGTGCTAGTGCCCTTCTGCTGACCGTTG 247 ********** ************************************************* consensus_7521#0 CCAGCATGTCCGGATGCGGTAAAACTATTAAAGCCTTCCTTCGCAAAGTATGTCGCCGTC 599 consensus_7521#1 CCAGCATGTCCGGATGCGGTAAAACTATTAAAGCCTTCCTTCGCAAAGTATGTCGCCGTC 307 ************************************************************ consensus_7521#0 GTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTG 659 consensus_7521#1 GTTCGATCGACGAACTGCATTAGCTTCGGACACTGGCGGATGTGGTTCTGCAGTACATTG 367 ************************************************************ consensus_7521#0 TTCGGTAGGGTAAGCTTAAGCAAAA--CCGACAGATACCCG--TACAGTAAAGCATCCAC 715 consensus_7521#1 TTCGGTAGGGTAAGCTTAAGCAANAAGCCGACAGATACGCGCGTACAGTAAAGCATCCAC 427 *********************** * *********** ** ***************** consensus_7521#0 TTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCT-CCAGCCTCGCAGCTACCCAGT 774 consensus_7521#1 TTCCGTCGGCCGGTCACCGGTAAACCAGCGGCTCTCCTGCCAGCCTCGCAGCTACCCAGT 487 ************************************** ********************* consensus_7521#0 TTAGGCAAGTTTTGGC-GTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCC 833 consensus_7521#1 TTAGGCAAGTTTTGGCAGTTGTGTTGGAACTCAGCTACGTCGTGAAATTCGATCGAATCC 547 **************** ******************************************* consensus_7521#0 TCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTTCTGCGCAGCACGTACTTTCGC 893 consensus_7521#1 TCTAACGAAAACCCCACCAACGATTGCGTGATATCGTTCGTGCGCAGCACGTACTTTCGC 607 ************************************** ******************** consensus_7521#0 GGGCAGTAGAAATTGAACGGAATTGGAATGCGTTCGCATACACCGTGCGCGTGGTGTCGA 953 consensus_7521#1 GGGCAGTAGAAATTGAACGGAA-----AAGCCTGGGGGCAATCTG--------------- 647 ********************** * ** * * * * * consensus_7521#0 CGTTCTTCGGATCGCCCCACAGCATGTACATGAAGTAGGGGTGCAAATTCTCCTGCACAT 1013 consensus_7521#1 ------------------------------------------------------------ consensus_7521#0 ACTGCATGTACCCGTTGATCTGTGTAGCGTGCTGGCTACTTTCGTCTGCCACGTTTTCCG 1073 consensus_7521#1 ------------------------------------------------------------ consensus_7521#0 CCCTGTCCGTCGCGGTCGGTGGCCCTATCCCGGCCGCTACCAGATGCTCAACGATCCGGC 1133 consensus_7521#1 ------------------------------------------------------------ consensus_7521#0 CATAGCCGGCGATCTTCTTGCCATCCGCTATCATGTACGGCAGCATGCCGTTGGGCGAGC 1193 consensus_7521#1 ------------------------------------------------------------ consensus_7521#0 TGAAGGGATTCCCATTAAAGTTGACCGTTACTTTCGCGCCGGAAAATTTCAGATATGCCA 1253 consensus_7521#1 ------------------------------------------------------------ consensus_7521#0 GCAGTCGACTGCATTCGTAGTCAATCGATGGAAGTCCCCACTCGCCACGGTACACAAATA 1313 consensus_7521#1 ------------------------------------------------------------ consensus_7521#0 TTTCCATTTCTCACTAGCTTTAGAGCACTCACCACCAGCTGCTGTGTATTTTACCCGCTT 1373 consensus_7521#1 ------------------------------------------------------------ consensus_7521#0 TACCAGTCTTTATTTTACCGTGCGGTTTACCGTCCTGCAGAAATGTGTGTTTACGCGTTG 1433 consensus_7521#1 ------------------------------------------------------------ consensus_7521#0 TGCAACCGGACGCGTGGGCGGACGCGTGGGCGG 1466 consensus_7521#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||