These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7522#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1246 fasta sequence [CCGAAAACAACGCGCAACAGAGTTTGGTTTGTGAATTTCTACAATTTACCGAAAGTTTCCGTAATATTCCACCATGGCGAAGCCGGGAGAACGGGCCCTGCAAGCCATCAAGGAGCAAAGTAAAGCGGTCACAGTATTTAAAACACCCATCGTGCCCAAGGCCAAAGCAAAGGACAAAATCATCCTCACGGAGGAGGAATACCTACAGGAAATGGGCAAAATCATTCAGCGGGACTTTTTTCCCGACTTGCAGAAACTGAAGGCACAGAACGAATATCTGGACGCGCTGGCTAGCAATGATGTTTGCAAATTGAGGCAGATTTTTTCCAAGTACAGTTCCAAAAGACCAAACTCATCCCGTTTAGCTAGTCCCGCCACGTTCGAGACACCACTACCGGAAGCGACACCAGCCAGCGAAGCGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCGGTGACAAGCACTCGTTGGACAGCTTCCTGCAGACGTACACCAGCGAGGACAATGACAGCTTCCAGGAGATCAT-CGAAACGG-CCGACCG-GAAGCTGCGTCAAAAGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACA-CCCCGGACGG-TGTGGAGCTGACCAAGGAGGAGCAGTTGGAAATGGCAAAGCGGAAGCAGGAAATCAACCACAACAGCACGCGCCTCCATCACAATCCGTTCAACGAGCAAGACAGCCGGCAGGCGATCGTGGAGGCGGCCAAAACGCAGGCCAAACATCTGCCGGAGAAAATCGGCGTGGACGGTCGGGTGGTAGATCAGTCCCTGGGCGAATCGCCACAGGTGCGGGGCTTCGGGTTCGTGAAGAGTCCCTCCCCCTGCCCGGGCGTTACGGACAGTCCGCTGTTTACGTGGGGTGAGATCGAAGGCACTCCGTTCCGGTTGGACGGCGGAGACACACCGCTCCATCCGTCGGCCGGTGGACCGTCGTTCCGTATCATGGAAACGTCGAAGCGCGAAAATTTGGCCCTACAGCTGGCGGAAAAGGCGGCCGAGCAGTCGCGGGAGAAGAAAGCGAAGGCGATCGAAGCGGCACGGCGCAACATTGCGTCACCGCTGGTGCGCAGCTCGTTC] [+] EMBL BM633213 [CCGAAAACAACGCGCAACAGAGTTTGGTTTGTGAATTTCTACAATTTACCGAAAGTTTCCGTAATATTCCACCATGGCGAAGCCGGGAGAACGGGCCCTGCAAGCCATCAAGGAGCAAAGTAAAGCGGTCACAGTATTTAAAACACCCATCGTGCCCAAGGCCAAAGCAAAGGACAAAATCATCCTCACGGAGGAGGAATACCTACAGGAAATGGGCAAAATCATTCAGCGGGACTTTTTTCCCGACTTGCAGAAACTGAAGGCACAGAACGAATATCTGGACGCGCTGGCTAGCAATGATGTTTGCAAATTGAGGCAGATTTTTTCCAAGTACAGTTCCAAAAGACCAAACTCATCCCGTTTAGCTAGTCCCGCCACGTTCGAGACACCACTACCGGAAGCGACACCAGCCAGCGAAGTGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCTGTGACAAGCACTCGTTGGACAGCTTCCTGCAGACGTACACCAGCGAGGACAATGACAGCTTCCAGGAGATCAT CGAAACGG CCGACCGAGAAGCTGCGTCAAAAGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGC ] [+] EMBL BX620006 [ CGAAGCCGGGAGAACGGGCCCTGCAAGCCATCAAGGAGCAAAGTAAAGCGGTCACAGTATTTAAAACACCCATCGTGCCCAAGGCCAAAGCAAAGGACAAAATCATCCTCACGGAGGAGGAATACCTACAGGAAATGGGCAAAATCATTCAGCGGGACTTTTTTCCCGACTTGCAGAAACTGAAGGCACAGAACGAATATCTGGACGCGCTGGCTAGCAATGATGTTTGCAAATTGAGGCAGATTTTTTCCAAGTACAGTTCCAAAAGACCAAACTCATCCCGTTTAGCTAGTCCCGCCACGTTCGAGACACCACTACCGGAAGCGACACCAGCCAGCGAAGTGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCTGTGACAAGCACTCGTTGGACAGCTTCCTGCAGACGTACACCANCGAGGACAATGACAGCTTCCAGGAGATCATCCGAAACGGCCCGACCG GANGCTGCGTCAAAAGTTTG ] [+] EMBL BX607347 [ CAAAGCAAAGGACAAAATCATCCTCACGGAGGAGGAATACCTACAGGAAATGGGCAAAATCATTCAGCGGGACTTTTTTCCCGACTTGCAGAAACTGAAGGCACAGAACGAATATCTGGACGCGCTGGCTAGCAATGATGTTTGCAAATTGAGGCAGATTTTTTCCAAGTACAGTTCCAAAAGACCAAACTCATCCCGTTTAGCTAGTCCCGCCACGTTCGAGACACCACTACCGGAAGCGACACCAGCCAGCGAAGCGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCGGAGACAAGCACTCGTTGGACAGCTTCCTGCAGACGTACACCAGCGAGGACAATGACAGCTTCCAGGAGATCAT CGAAACGG CCGACCG GAAGCTGCGTCAAAAGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACA CCCCGGACGG TGTGGAGCTGACCAAGGAGGAGCAGTTGGAAATGGCAAAGCGGAAGCAGGAAATCAACCACAACAGCACGCGCCTCCATCACAATCCGTTCAACGAGCAAGACAGCCGGCAGGCGATCGTGGAGGCGGCCAAAACGCAGGCCAAACATCTGCCGGAGAAAATCGGCGTGGACGGTCGGGTGGTAGATCAGTCCCTGGGCGAATCGCCACAG ] [+] EMBL BX607869 [ CAGAAACTGAAGGCACAGAACGAATATCTGGACGCGCTGGCTAGCAATGATGTTTGCAAATTGAGGCAGATTTTTTCCAAGTACAGTTCCAAAAGACCAAACTCATCCCGTGTAGCAAGTCCCGCCACATTCGAGACACCACTACCGGAAGCGACACCAGCCAGCGAAGCGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCGGTGACAAGCACTCGTTGGACAGCTTCCTTCAGACGTACACCAGCGAGGACAATGACAGCTTCCAGGAGATCAT CGAAACGG CCGACCG GAAGCTGCGTCAAAAGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACA CCCCGGACGG TGTGGAGCTGACCAAGGAGGAGCAGCTGGAAATGGCAAAGCGGAAGCAGGAAATCAACCACAACAGCACGCGCCTCCATCACAATCCGTTCAACGAGCAAGACAGCCGGCAGGCGATCGTGGAGGCGGCCAAAACGCAGGCCAAACATCTGCCGGAGAAAATCGGCGTGGACGGTCGGGTGGTGGATCAGTCTCTGGGCGAATCGCCACAGGTGCGGGGCTTCGGGTTCGTGAAGAGTCCCTCCC ] [+] EMBL BX607229 [ GTTCCAAAAGACCAAACTCATCCCGTTTAGCTAGTCCCGCCACGTTCGAGACACCACTACCGGAAGCGACACCAGCCAGCGAAGCGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCGGAGACAAGCACTCGTTGGACAGCTTCCTGCAGACGTACACCAGCGAGGACAATGACAGCTTCCAGGAGATCAT CGAAACGG CCGACCG GAAGCTGCGTCAAAAGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACACCCCCGGACGGTTGTGGAGCTGACCAAGGAGGAGCAGTTGGAAATGGCAAAGCGGAAGC ] [+] EMBL BX602309 [ TGCCGTGCTGTACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCATCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACA CCCCGGACGG TGTGGAGCTGACCAAGGAGGAGCAGTTGGAAATGGCAAAGCGGAAGCAGGAAATCAACCACAACAGCACGCGCCTCCATCACAATCCGTTCAACGAGCAAGACAGCCGGCAGGCGATCGTGGAGGCGGCCAAAACGCAGGCCAAACATCTGCCGGAGAAAATCGGCGTGGACGGTCGGGTGGTAGATCAGTCCCTGGGCGAATCGCCACAGGTGCGGGGCTTCGGGTTCGTGAAGAGTCCCTCCCCCTGCCCGGGCGTTACGGACAGTCCGCTGTTTACGTGGGGTGAGATCGAAGGCACTCCGTTCCGGTTGGACGGCGGAGACACACCGCTCCATCCGTCGGCCGGTGGACCGTCGTTCCGTATCATGGAAACGTCGAAGCGCGAAAATTTGGCCCTACAGCTGGCGGAAAAGGCGGCCGAGCAGTCGCGGGAGAAGAAAGCGAAGGCGATCGAAGCGGCACGGCGCAACATTGCGTCACCGCTGGTGCGCAGCTCGTTC] consensusID : consensus_7522#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [AGAATCGGCACAGGCGTNTNACAGTCCCGCCACATTCGAGACACCACTACCGGAAGCGAGCACCAGCCAGGCGAAGCGCCACCATCGATCCGGTCGANCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCGGTGACAAGCACTCGTTGGACAGCTTCCTTCAGACGTACACCAGTCGAGGACAATGACAGCTTCCAGGAGATCATCGAAACGGCCGACCGGAAGCTGCGTCAAAATGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACACCCCGGACGGTGTGTAGCGTGACCAAGGAGGAGCAGCTGGAAATGGCAAAGCGGAAGCAGGAAATCAACCAGCAGACAGCTACGCGCCTCCAGTCGACAATCCGTTCAACGAGCAAGACAGCCGGCATGCGATCGTGGANCGCGGCCAACANCGCAGGCCGAAAGCATCTGCCGGAGANAACATCGGGCGCTGGACTGTCCGGTGGTGGATCAGGTCTCTGGGCGAATCGCCTACAGGTGCGNGGCTTCGGGTTCGAT] [+] EMBL BX466375 [AGAATCGGCACAGGCGTNTNACAGTCCCGCCACATTCGAGACACCACTACCGGAAGCGAGCACCAGCCAGGCGAAGCGCCACCATCGATCCGGTCGANCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTCGGTGACAAGCACTCGTTGGACAGCTTCCTTCAGACGTACACCAGTCGAGGACAATGACAGCTTCCAGGAGATCATCGAAACGGCCGACCGGAAGCTGCGTCAAAATGTTTGCCGTGCTGTACCAAGCCGAAGGTACGACCGCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCGAGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACAAAAACTACATCATGTACACCCCGGACGGTGTGTAGCGTGACCAAGGAGGAGCAGCTGGAAATGGCAAAGCGGAAGCAGGAAATCAACCAGCAGACAGCTACGCGCCTCCAGTCGACAATCCGTTCAACGAGCAAGACAGCCGGCATGCGATCGTGGANCGCGGCCAACANCGCAGGCCGAAAGCATCTGCCGGAGANAACATCGGGCGCTGGACTGTCCGGTGGTGGATCAGGTCTCTGGGCGAATCGCCTACAGGTGCGNGGCTTCGGGTTCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7522#0 CCGAAAACAACGCGCAACAGAGTTTGGTTTGTGAATTTCTACAATTTACCGAAAGTTTCC 60 consensus_7522#1 ------------------------------------------------------------ consensus_7522#0 GTAATATTCCACCATGGCGAAGCCGGGAGAACGGGCCCTGCAAGCCATCAAGGAGCAAAG 120 consensus_7522#1 ------------------------------------------------------------ consensus_7522#0 TAAAGCGGTCACAGTATTTAAAACACCCATCGTGCCCAAGGCCAAAGCAAAGGACAAAAT 180 consensus_7522#1 ------------------------------------------------------------ consensus_7522#0 CATCCTCACGGAGGAGGAATACCTACAGGAAATGGGCAAAATCATTCAGCGGGACTTTTT 240 consensus_7522#1 ------------------------------------------------------------ consensus_7522#0 TCCCGACTTGCAGAAACTGAAGGCACAGAACGAATATCTGGACGCGCTGGCTAGCAATGA 300 consensus_7522#1 ------------------------------------------------------------ consensus_7522#0 TGTTTGCAAATTGAGGCAGATTTTTTCCAAGTACAGTTCCAAAAGACCAAACTCATCCCG 360 consensus_7522#1 -------------------------------------------AGAATCGGCACAGGC-G 16 *** * ** * * consensus_7522#0 TTTAGCTAGTCCCGCCACGTTCGAGACACCACTACCGGAAGCGA-CACCAGCCAG-CGAA 418 consensus_7522#1 TNTNAC-AGTCCCGCCACATTCGAGACACCACTACCGGAAGCGAGCACCAGCCAGGCGAA 75 * * * *********** ************************* ********** **** consensus_7522#0 GCGCCACCATCGATCCGGTCGACCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTC 478 consensus_7522#1 GCGCCACCATCGATCCGGTCGANCTCCAGCGTTGGTTCGAACAAATCGACCAAAACGCTC 135 ********************** ************************************* consensus_7522#0 GGTGACAAGCACTCGTTGGACAGCTTCCTGCAGACGTACACCAG-CGAGGACAATGACAG 537 consensus_7522#1 GGTGACAAGCACTCGTTGGACAGCTTCCTTCAGACGTACACCAGTCGAGGACAATGACAG 195 ***************************** ************** *************** consensus_7522#0 CTTCCAGGAGATCATCGAAACGGCCGACCGGAAGCTGCGTCAAAA-GTTTGCCGTGCTGT 596 consensus_7522#1 CTTCCAGGAGATCATCGAAACGGCCGACCGGAAGCTGCGTCAAAATGTTTGCCGTGCTGT 255 ********************************************* ************** consensus_7522#0 ACCAAGCCGAAGGTACGACCGCCATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCG 656 consensus_7522#1 ACCAAGCCGAAGGTACGACCGC-ATCGAGATGGGCAAGTGCCTAGCCCTGCCGAGCATCG 314 ********************** ************************************* consensus_7522#0 AGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACA 716 consensus_7522#1 AGCAGCAGTTTAACCAGCAAGAGCGACCCAAGCAGCTCGATATGTGGCGGTACACGAACA 374 ************************************************************ consensus_7522#0 AAAACTACATCATGTACACCCCGGACGGTGTGGAGC-TGACCAAGGAGGAGCAGTTGGAA 775 consensus_7522#1 AAAACTACATCATGTACACCCCGGACGGTGTGTAGCGTGACCAAGGAGGAGCAGCTGGAA 434 ******************************** *** ***************** ***** consensus_7522#0 ATGGCAAAGCGGAAGCAGGAAATCAACCAC--AACAGC-ACGCGCCTCCATC--ACAATC 830 consensus_7522#1 ATGGCAAAGCGGAAGCAGGAAATCAACCAGCAGACAGCTACGCGCCTCCAGTCGACAATC 494 ***************************** ***** *********** ****** consensus_7522#0 CGTTCAACGAGCAAGACAGCCGGCAGGCGATCGTGGAG-GCGGCCAA-AACGCAGGCCAA 888 consensus_7522#1 CGTTCAACGAGCAAGACAGCCGGCATGCGATCGTGGANCGCGGCCAACANCGCAGGCCGA 554 ************************* *********** ******** * ******** * consensus_7522#0 A--CATCTGCCGGAGAAAATC---GGCG-TGGACGGTCGGGTGGTAGATCAG-TCCCTGG 941 consensus_7522#1 AAGCATCTGCCGGAGANAACATCGGGCGCTGGACTGTCCGGTGGTGGATCAGGTCTCTGG 614 * ************* ** **** ***** *** ****** ****** ** **** consensus_7522#0 GCGAATCGCC-ACAGGTGCGGGGCTTCGGGTTCGTGAAGAGTCCCTCCCCCTGCCCGGGC 1000 consensus_7522#1 GCGAATCGCCTACAGGTGCGNGGCTTCGGGTTCGAT------------------------ 650 ********** ********* ************* consensus_7522#0 GTTACGGACAGTCCGCTGTTTACGTGGGGTGAGATCGAAGGCACTCCGTTCCGGTTGGAC 1060 consensus_7522#1 ------------------------------------------------------------ consensus_7522#0 GGCGGAGACACACCGCTCCATCCGTCGGCCGGTGGACCGTCGTTCCGTATCATGGAAACG 1120 consensus_7522#1 ------------------------------------------------------------ consensus_7522#0 TCGAAGCGCGAAAATTTGGCCCTACAGCTGGCGGAAAAGGCGGCCGAGCAGTCGCGGGAG 1180 consensus_7522#1 ------------------------------------------------------------ consensus_7522#0 AAGAAAGCGAAGGCGATCGAAGCGGCACGGCGCAACATTGCGTCACCGCTGGTGCGCAGC 1240 consensus_7522#1 ------------------------------------------------------------ consensus_7522#0 TCGTTC 1246 consensus_7522#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||