These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7539#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1388 fasta sequence [CCAATCGGGTCCCGCGGTACGGACGTTCAGCGCTTCAGGCGAGTGAAGCAGATTTCTAGACTAACTCCGATAGTCAACCATATCCACTTGTGGGCAAGCGTTAGTATCTGTTTCTGTTTTGGCCGATTGCAAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAACATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACATTACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCGCATCAGGTTGGTGCCGGGCTGTGCTAAGAGAGGCGCCAGGCCAGGCGACAGCGTGTAACAAAACTAAACATGCAGACAGCACAGGTCGCAATACTAATATAATTAATAATCGTAAGAACGTTTAGCGTTTGTATAGTGTATAGTGAGTTTGTGAATAGAGAGGGTTTGTAAGCAGCCGCCGTACGATTAGCGACGAATTCGGAAACTGTTTATCATGTCATGTGTGCGCTAGCGAGAATTGGGGGAACACAAACAAACAAGAAACTACGAAATCAAAAATCCCAGAAGCAGATGAAGTATTAGCAAAACACGGAGTGCTTGGGGAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGAGAGTGTAGATTTCGTTTCGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCTTCCGTCGGTCGCATGTGCCATCCGCAGCAAGTAGGACGGAATAATAGGGTAGTGTAGCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGCTTTATACTTTTTTGCTAACGTTTGGTAAAGAGAAGAGATGATTGGTTTTGATGCGTTGTGCCTAAAAGAAAGCGTTTGCTTTGCTATTTTCCCTTCCAACGGCAGGATGGTGAAGGATGTACAGATTAGAATGAATTGC-TTTTGAGACGCACAGCTAAAAACAAAACACGGAACATATATGGAGCTCGCGCAGTTCGCAGCTCGACGTTGCTGCTCGGAAACGCAGCGCAGACGACCGAACGCGATGGGCACAAAAAAAAAAAAAAACAGGACAAATACGTGCGCGTGTAGGCAGGTGCGTAGCAGAAGAAGCTACATGCAGACAGGTGAATCCGTGTGGGGGGTGGGTGGGTGTGCTGAGAACAACCCAAGTAGTGTTAGCCTTTTTATACAGCATAGAGTTACGAACAACCCAGCGTGGCTAGAGGAAAGTCTATTGTAATCCCCTTTCATGCGCGCTGGGACCGATTGTTATTTCATCGAGAAACTGTAGCGAACACACAGGGTGGGGATGAAAGGCTGAGACAAGCAGTACA] [+] EMBL AL692456 [CCAATCGGGTCCCGCGGTACGGACGTTCAGCGCTTCAGGCGAGTGAAGCAGATTTCTAGACTAACTCCGATAGTCAACCATATCCACTTGTGGGCAAGCGTTAGTATCTGTTTCTGTTTTGGCCGATTGCAAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAACATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACATTACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCGCAT ] [+] EMBL BX603876 [ TCCACTTGTGGGCAAGCGTTAGTATCTGTTTCTGTTTTGGCCGATTGCAAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAACATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACATTACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCGCATCAGGTTGGTGCCGGGCTGTGCTAAGAGAGGCGCCAGGCCAGGCGACAGCGTGTAACAAAACTAAACATGCAGACAGCACAGGTCGCAATACTAATATAATTAATAATCGTAAGAACGTTTAGCGTTTGTATAGTGTATAGTGAGTTTGTGAATAGAGAGGGTTTGTAAGCAGCCGCCGTACGATTAGCGACGAATTCGGAAACTGTTTATCATGTCATGTGTGCGCTAGCGAGAATTGGGGGAACACAAACAAACAAGAAACTACGAAATCAAAAATCCCAGAAGCAGATGAAGTATTAGCAAAACACGGAGTGCTTGGGGAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGAGAGTGTAGATTTCG ] [+] EMBL BX623668 [ GTGCTAAGAGAGGCGCCAGGCCAGGCGACAGCGTGTAACAAAACTAAACATGCAGACAGCACAGGTCGCAATACTAATATAATTAATAATCGTAAGAACGTTTAGCGTTTGTATAGTGTATAGTGAGTTTGTGAATAGAGAGGGTTTGTAAGCAGCCGCCGTACGATTAGCGACGAATTCGGAAACTGTTTATCATGTCATGTGTGCGCTAGCGAGAATTGGGGGAACACAAACAAACAAGAAACTACGAAATCAAAAATCCCAGAAGCAGATGAAGTATTAGCAAAACACGGAGTGCTTGGGGAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGAGAGTGTAGATTTCGTTTCGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCTTCCGTCGGTCGCATGTGCCATCCGCAGCAAGTAGGACGGAATAATAGGGTAGTGTAGCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGCTTTATACTTTTTTGCTAACGTTTGGTAAAGAGAAGAGATGATTGGTTTTGATGCGTTGTGCCTAAAAGAAAGCGTTTGCTTTGCTATTTTCCCTTCCAACGGCAGGATGGTGAAGGATGTACAGATTAGAATGAATTGCTTTTTGAGACGCACAGCT AAAACNAAACACGGAACATATATGGAGCTCGCGCAGTTCGCAGCTCGACGTT ] [+] EMBL BX618881 [ TTAGCAAAACACGGAGTGCTTGGGGAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGAGAGTGTAGATTTCGTTTCGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCTTCCGTCGGTCGCATGTGCCATCCGCAGCAAGTAGGACGGAATAATAGGGTAGTGTAGCTCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGCTTTATACTTTTTTGCTAACGTTTGGTAAAGAGAAGAGATGATTGGTTTTGATGCGTTGTGCCTAAAAGAAAGCGTTTGCTTTGCTATTTTCCCTTCCAACGGCAGGATGGTGAAGGATGTACAGATTAGAATGAATTGC TTTTGAGACGCACAGCTAAAAACAAAACACGGAACATATATGGAGCTCGCGCAGTTCGCAGCTCG ] [+] EMBL BX608062 [ AGGTCCGTCAGGCACCATCTTCCGTCGGTCGCATGTGCCATCCGCAGCAAGTAGGACGGAATAATAGGGTAGTGTAGCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGCTTTATACTTTTTTGCTAACGTTTGGTAAAGAGAAGAGATGATTGGTTTTGATGCGTTGTGCCTAAAAGAAAGCGTTTGCTTTGCTATTTTCCCTTCCAACGGCAGGATGGTGAAGGATGTACAGATTAGAATGAATTGC TTTTGAGACGCACAGCTAAAAACAAAACACGGAACATATATGGAGCTCGCGCAGTTCGCAGCTCGACGTTGCTGCTCGGAAACGCAGCGCAGACGACCGAACGCGATGGGCACAAAAAAAAAAAAAAACAGGACAAATACGTGCGCGTGTAGGCAGGTGCGTAGCAGAAGAAGCTACATGCAGACAGGTGAATCCGTGTGGGGGGTGGGTGGGTGTGCTGAGAACAACCCAAGTAGTGTTAGCCTTTTTATACAGCATAGAGTTACGAACAACCCAGCGTGGCTAGAGGAAAGTCTATTGTAATCCCCTTTCATGCGCGCTGGGACCGATTGTTATTTCATCGAGAAACTGTAGCGAACACACAGGGTGGGGATGAAAGGCTGAGACAAGCAGTACA] consensusID : consensus_7539#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence [CAGGCAGAATCGCCGCGGTAATATACAGTGTACTAGATGAGTTTGCCTGANTACGAGAGGGTTTGTAATCGCAAAGCGCCGTACGATTAGCGANGAATTCGGAAACTGTTTATCATGTCATGTGTGCGCCTAGCGACGAATCTTGGGGGAACAACAAAAAACAAGAAACTACGCAANTCAAAAATCCCAGAAGCACGATGAACGTATTAGCAAAACCACGGAGTGCTTGTGGGAGCGTTCNAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGACGAGTGTCGATCTTCGNTTTCCGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCTTCCGTCGGATCGCCATGTGCCATCCGACANCAAGTAGGACGGAATAATAGGGTAGCTGTAGCCCCAAAAGTATGCACCCCGGAGAACCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGNNTTTATACTTNGTTTGCTACACGTCAGGTAAAGAGAAGAGATGATATGGTATTCTGATGCGTTGTGCCTAAAATATGAAAGCAGTTCTGCTTGCTGCTATATTTCCCCTTCCAAACGGCAGGATGGGTGAAGGATGTACACGATTCAGCACTGANTTGCTTATGAGACGCACCAGCTAAAAACAAAAACCAGGGAACAATATATGGAAGCATCGCAGGCA] [+] EMBL AL696673 [CAGGCAGAATCGCCGCGGTAATATACAGTGTACTAGATGAGTTTGCCTGANTACGAGAGGGTTTGTAATCGCAAAGCGCCGTACGATTAGCGANGAATTCGGAAACTGTTTATCATGTCATGTGTGCGCCTAGCGACGAATCTTGGGGGAACAACAAAAAACAAGAAACTACGCAANTCAAAAATCCCAGAAGCACGATGAACGTATTAGCAAAACCACGGAGTGCTTGTGGGAGCGTTCNAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGACGAGTGTCGATCTTCGNTTTCCGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCTTCCGTCGGATCGCCATGTGCCATCCGACANCAAGTAGGACGGAATAATAGGGTAGCTGTAGCCCCAAAAGTATGCACCCCGGAGAACCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGNNTTTATACTTNGTTTGCTACACGTCAGGTAAAGAGAAGAGATGATATGGTATTCTGATGCGTTGTGCCTAAAATATGAAAGCAGTTCTGCTTGCTGCTATATTTCCCCTTCCAAACGGCAGGATGGGTGAAGGATGTACACGATTCAGCACTGANTTGCTTATGAGACGCACCAGCTAAAAACAAAAACCAGGGAACAATATATGGAAGCATCGCAGGCA] consensusID : consensus_7539#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [TCTGTTTCTGTTTTGGCCGATTGCAAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAACATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACATTACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCGCATCAGGTTGGTGCCGGGCTGTGCTAAGAGAGGCGCCAGGCCAGGCGACAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGAGAGTGTAGATTTCGTTTCGTGTATGACATTATTCAAACCAGGTCCGTTAGGCACCATCTTCCGTCGGTCGCATGTGCCATCCGCAGCAAGTAGGACGGAATAATAGGGTAGTGTAGCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGCTTTATACTTTTTTGCTAACGTTTGGTAAAGAGAAGAGATGATTGGTTTTGATG] [+] EMBL BX617773 [TCTGTTTCTGTTTTGGCCGATTGCAAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAACATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACATTACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCGCATCAGGTTGGTGCCGGGCTGTGCTAAGAGAGGCGCCAGGCCAGGCGACAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGAGAGTGTAGATTTCGTTTCGTGTATGACATTATTCAAACCAGGTCCGTTAGGCACCATCTTCCGTCGGTCGCATGTGCCATCCGCAGCAAGTAGGACGGAATAATAGGGTAGTGTAGCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGCTTCGTTACCCTCTTCTTCTGTTGCTTTATACTTTTTTGCTAACGTTTGGTAAAGAGAAGAGATGATTGGTTTTGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7539#0 CCAATCGGGTCCCGCGGTACGGACGTTCAGCGCTTCAGGCGAGTGAAGCAGATTTCTAGA 60 consensus_7539#2 ------------------------------------------------------------ consensus_7539#1 ------------------------------------------------------------ consensus_7539#0 CTAACTCCGATAGTCAACCATATCCACTTGTGGGCAAGCGTTAGTATCTGTTTCTGTTTT 120 consensus_7539#2 ----------------------------------------------TCTGTTTCTGTTTT 14 consensus_7539#1 --------------------------------------CAGGCAGAATCGCCGCGGTAAT 22 * * ** * consensus_7539#0 GGCCGAT-TGC-AAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAAC 178 consensus_7539#2 GGCCGAT-TGC-AAACAAAGCCGAGTGTGCCCAGGACACTGTAACGTAACCGGGCGCAAC 72 consensus_7539#1 ATACAGTGTACTAGATGAGTTTGCCTGANTACGAGAGGGTTTGTAATCGCAAAGCGCCGT 82 * * * * * * * * ** * ** * * * * **** consensus_7539#0 ATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACAT 238 consensus_7539#2 ATGTAAACAGACCTTCTAATTAGCTGGTTCTATTTTATTGTGTTAAAATAACCATTACAT 132 consensus_7539#1 ACGATTAGCGANGAATTCGGAAACTGTTTATCATGTCATGTGTGCGCCTAGCGACGA-AT 141 * * * ** * * *** ** * * * ***** ** * * * ** consensus_7539#0 TACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCG-CATCAGGTTGGTGCCGG 297 consensus_7539#2 TACAAGACAAGCAAAATCAGCAAGCAACCCATCAAAACGGCG-CATCAGGTTGGTGCCGG 191 consensus_7539#1 CTTGGGGGAACAACAAAAAACAAGAAACTACGCAANTCAAAAATCCCAGAAGCACGATGA 201 * ** * ** * **** *** *** * *** * * consensus_7539#0 GCTGTGCTAAGAGAGGCGCCAGGC-CAGGCGACAGCGTGTAACAAAACTAAACATGCAGA 356 consensus_7539#2 GCTGTGCTAAGAGAGGCGCCAGGC-CAGGCGACAGCGT---------------------- 228 consensus_7539#1 AC-GTATTAGCAAAACCACGGAGTGCTTGTGGGAGCGT---------------------- 238 * ** ** * * * * * * * * ***** consensus_7539#0 CAGCACAGGTCGCAATACTAATATAATTAATAATCGTAAGAACGTTTAGCGTTTGTATAG 416 consensus_7539#2 ------------------------------------------------------------ consensus_7539#1 ------------------------------------------------------------ consensus_7539#0 TGTATAGTGAGTTTGTGAATAGAGAGGGTTTGTAAGCAGCCGCCGTACGATTAGCGACGA 476 consensus_7539#2 ------------------------------------------------------------ consensus_7539#1 ------------------------------------------------------------ consensus_7539#0 ATTCGGAAACTGTTTATCATGTCATGTGTGCGCTAGCGAGAATTGGGGGAACACAAACAA 536 consensus_7539#2 ------------------------------------------------------------ consensus_7539#1 ------------------------------------------------------------ consensus_7539#0 ACAAGAAACTACGAAATCAAAAATCCCAGAAGCAGATGAAGTATTAGCAAAACACGGAGT 596 consensus_7539#2 ------------------------------------------------------------ consensus_7539#1 ------------------------------------------------------------ consensus_7539#0 GCTTGGGGAGCGTTAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGA-GA 655 consensus_7539#2 -------------TAAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGA-GA 274 consensus_7539#1 ------------TCNAAGCAAACTAAACAATACAGACGGACAGGGCAAGTGTAGGGACGA 286 ****************************************** ** consensus_7539#0 GTGTAGAT-TTCGTTT--CGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCT 712 consensus_7539#2 GTGTAGAT-TTCGTTT--CGTGTATGACATTATTCAAACCAGGTCCGTTAGGCACCATCT 331 consensus_7539#1 GTGTCGATCTTCGNTTTCCGTGTATGACATTATTCAAACCAGGTCCGTCAGGCACCATCT 346 **** *** **** ** ****************************** *********** consensus_7539#0 TCCGTCGG-TCGC-ATGTGCCATCCG-CAGCAAGTAGGACGGAATAATAGGGTAG-TGTA 768 consensus_7539#2 TCCGTCGG-TCGC-ATGTGCCATCCG-CAGCAAGTAGGACGGAATAATAGGGTAG-TGTA 387 consensus_7539#1 TCCGTCGGATCGCCATGTGCCATCCGACANCAAGTAGGACGGAATAATAGGGTAGCTGTA 406 ******** **** ************ ** ************************* **** consensus_7539#0 GCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGC 828 consensus_7539#2 GCCCCAAAAGTATGCACCCCGGAGACCCCACACTGAATGTAACGTTGTCTATTTCACTGC 447 consensus_7539#1 GCCCCAAAAGTATGCACCCCGGAGAACCCACACTGAATGTAACGTTGTCTATTTCACTGC 466 ************************* ********************************** consensus_7539#0 TTCGTTACCCTCTTCTTCTGTTGCTTT-ATACTTT-TTTGCTA-ACGTTTGGTAAAGAGA 885 consensus_7539#2 TTCGTTACCCTCTTCTTCTGTTGCTTT-ATACTTT-TTTGCTA-ACGTTTGGTAAAGAGA 504 consensus_7539#1 TTCGTTACCCTCTTCTTCTGTTGNNTTTATACTTNGTTTGCTACACGTCAGGTAAAGAGA 526 *********************** ** ****** ******* **** ********** consensus_7539#0 AGAGATGAT-TGGT--TTTGATGCGTTGTGCCTAAAAGAAAGCGTTTGCTTTGCTATTTT 942 consensus_7539#2 AGAGATGAT-TGGT--TTTGATG------------------------------------- 524 consensus_7539#1 AGAGATGATATGGTATTCTGATGCGTTGTGCCTAAAATATGAAAGCAGTTCTGCTTGCTG 586 ********* **** * ***** consensus_7539#0 CCCTTCCAACGGCAGGATGGTGAAGGATGTACAGATTAGAATGAATTGCTTTTGAGACGC 1002 consensus_7539#2 ------------------------------------------------------------ consensus_7539#1 CTATATTTCCCCTTCCAAACGGCAGGATGGGTGAAGGATGTACACGATTCAGCACTGANT 646 consensus_7539#0 ACAGCTAAAAACAAAACACGGAACATATATGGAGCTCGCGCAGTTCGCAGCTCGACGTTG 1062 consensus_7539#2 ------------------------------------------------------------ consensus_7539#1 TGCTTATGAGACGCACCAGCTAAAAACAAAAACCAGGGAACAATATATGGAAGCATCGCA 706 consensus_7539#0 CTGCTCGGAAACGCAGCGCAGACGACCGAACGCGATGGGCACAAAAAAAAAAAAAAACAG 1122 consensus_7539#2 ------------------------------------------------------------ consensus_7539#1 GGCA-------------------------------------------------------- 710 consensus_7539#0 GACAAATACGTGCGCGTGTAGGCAGGTGCGTAGCAGAAGAAGCTACATGCAGACAGGTGA 1182 consensus_7539#2 ------------------------------------------------------------ consensus_7539#1 ------------------------------------------------------------ consensus_7539#0 ATCCGTGTGGGGGGTGGGTGGGTGTGCTGAGAACAACCCAAGTAGTGTTAGCCTTTTTAT 1242 consensus_7539#2 ------------------------------------------------------------ consensus_7539#1 ------------------------------------------------------------ consensus_7539#0 ACAGCATAGAGTTACGAACAACCCAGCGTGGCTAGAGGAAAGTCTATTGTAATCCCCTTT 1302 consensus_7539#2 ------------------------------------------------------------ consensus_7539#1 ------------------------------------------------------------ consensus_7539#0 CATGCGCGCTGGGACCGATTGTTATTTCATCGAGAAACTGTAGCGAACACACAGGGTGGG 1362 consensus_7539#2 ------------------------------------------------------------ consensus_7539#1 ------------------------------------------------------------ consensus_7539#0 GATGAAAGGCTGAGACAAGCAGTACA 1388 consensus_7539#2 -------------------------- consensus_7539#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||