These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7541#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 785 fasta sequence [CCAAGGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTAACAGTCAAAATACGCGCTGCCGTGTAGGAGCAATATCAACACCACACCTAGCAGCATGGCGTCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGCGAACGCGA-TCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGG-TGGGACGGACAGCGCAACGCAGCTGCTAACGAAGCCGCGGCTGCAGGAGCTGGTGCGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCGTGCCTGCTGGCCAAACATCGCAAGGTGCCGAAGGTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACCGTGACAGAGGCACACAAACAGCGGTTGGCGCTCATAAGGAAGGCTATCAAGAAGTATTAGCACATCCGTTTGCCCCTAGCCGATACTTTAGAGTAATAGTAATAATCATACCTACCGCAATTCATCCTTTCTGTACTGACTGGCACACGCTCATGCCCGCGCGCGCACGCCATCTCTCACGATGTAACAAATCCCACAAAAATAAACTAAACTGCTACTATATTTACTTACGACACAAAAAAAAAAAAAAAAGGCCACATGTCCCCGGGCCGCAGGGTCC] [-] EMBL CNS08JOO [CCAAGGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTAACAGTCAAAATACGGGCTGCCGTGTAGGAGCAATATCAACACCACACCTAGCAGCATGGCGTCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGCGAACGCGA TCGGCGGAGGCTCCAGTGCCAAGATTTCCTCCGGGGGCCGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGGAAAAAAAGAAAAAAAAAAAGCAGCTGCTAACGAAGCCGCGGCTGCAGGGGCTGGTGCGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCGTGCCTGCTGGCCAAACATCGCAAGGTGCCGAAGGTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACCGTGACAGAGGCACACAAACAGCGGTTGGCGCTCATAAGGAAGGCTATCAAGAAGTATTAGAACATCCGTTTGCCCCTAGCCGATACTTTAGAGTAATAGTAATAATCATACCTACCGCAATTCATCCTTTCTGTACTTACTGGCACACGCTCATGCCCGCGCGCGCACGCCATTTCTCACGATGTAACAAATCCCACAAAAATAAACTAAACTGCTACTATATTT ] [+] EMBL BM605528 [ ccgGTCAACATACGCGCTGCCGTGTAGGAGCAATATCAACACCACACCTAGCAGCATGGCGTCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGCGAACGCGA TCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGG TGGGACGGACAGCGCAACGCAGCTGCTAACGAAGCCGCGGCTGCAGGAGCTGGTGCGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCCTGCCTGCTGGCCAAACATCGCAAGGTGCCGAAGGTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACCGTGACCGAGGCACACAAACAGCGGTTGGCGCTCATAAGGAAAGCTATCAAGAAGTATTAGCACATCCGTTTGCCCCTAGCCGATACTTTAGAGTAATAGTAATAATCATACCTACCGCAATTCATCCTTTCTGTACTGACTGGCACACGCTCATGTC CGCGCGCACGCCATCTTTCGCGATGTAA ] [+] EMBL CNS08JO1 [ ACGCGCTG CGTGTAGGAGCAATATCAACACCACACCTAGCAGCATGGCGTCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGCGAACGCGATTCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGG TGGGACGGACAGCGCAACGCAGCTGCTAACGAAGCCGCGGCTGCAGGAGCTGGTGCGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCGTGCCTGCTGGCCAAACATCGCAAGGTGCCGAA GTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACCGTGACATAGGCACACAAACAGCGGTTGGCGCTCATAAGGAAGGCTATTTTTTTGTATTAGCACATCCGTTTGCCCCTAGCCGATACTTTAGAGTAATAGTAATAATCATACCTACCGCAATTCATCCTTTCTGTACTGACTGGCACACGCTCATGCCCGCGCGCGCACGCCATCTCTCACGATGTAACAAATCCCACAAAAATAAACTAAACTGCTACTAAACTTACTTACGACACAAAAAAAAAAAAAAAAGGCCACATGTCCCCGGGCCGCAGGGTCC] [+] EMBL BX608863 [ CACACCTAGCAGCATGGCGTCACCGTCCCAAAGCATCCCGGCTACGGCAGCCACAGCGAACGCGA TCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGG TGGGACGGACAGCGCAACGCAGCTGCTAACGAAGCCGCGGCTGCAGGAGCTGGTGCGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCGTGCCTGCTGGCCAAACATCGCAAGGTGCCGAAGGTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACCGTGACCGAGGCACACAAACAGCGGTTGGCGCTCATAAGGAAAGCTATCAAGAAGTATTAGCACATCCGTTTGCCCCTAGCCGATACTTTAGAGTAATAGTAATAATCATACCTACCGCAATTCATCCTTTCTGTACTGACTGGCACACGCTCATGTCCGCGCGCGCACGCCATCTTTCACGATGTAA ] consensusID : consensus_7541#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 743 fasta sequence [CAAGAATCCCCCGAGGTTTCGCTGCGTGTAGGAGGTTCGTAGATTTGCGATTAATTTAATTGATGTTTTCTATGGTTTCTTTATAGCTGGCATTATGCAGCACACATAAAGTGCTTCTATAAACCCCAGAAATTAAGACAAATATGGAGTACAGCACAAAAGTGAGGCTGCAAACCCCGCAAAGCTGTTGCCTTTCTGTTGTGTTTAACTGTACTGTTTCTTCGTTCAATGGAAAACGGGAATCGTTTCGTCTAGTTATTCCTTAAATATATTGCTCTGATTGCACTTANAATGTACTATTGCTCTAATGCTCCAAAACTAAACAGCAATATCAACACACACCTAGCAGCATGGCGTCACCGTCCCAAAGCAGCCGGTACGGCAGCCACAGCGAACGCGATCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGACAGCTCTGCGGNCGGCACAACAGTCCGCGTCGGGCAGCGGATGGGACGGACAGCGCAACAGCAGCTGCTAACGAAACCGCGGACTGCAGGAGCTGGTACGCGAAATCGATCCGACCGAGCAGCTGGACCGNAGGAGGTGGAAGACGCTGTTGCTACACGCATTANCGGCACGATNTTCGTCGCAGAACCACCGTGAACCGCNNCGTGCCTTGCCTGGCCACAAACATCGCAAAGGTGCCGNAAANGTTGGACAGTGACGAGACGTGCAATTGCATCTGGNAAGCAACTGNACCATGTGGATAACC] [+] EMBL AL694680 [CAAGAATCCCCCGAGGTTTCGCTGCGTGTAGGAGGTTCGTAGATTTGCGATTAATTTAATTGATGTTTTCTATGGTTTCTTTATAGCTGGCATTATGCAGCACACATAAAGTGCTTCTATAAACCCCAGAAATTAAGACAAATATGGAGTACAGCACAAAAGTGAGGCTGCAAACCCCGCAAAGCTGTTGCCTTTCTGTTGTGTTTAACTGTACTGTTTCTTCGTTCAATGGAAAACGGGAATCGTTTCGTCTAGTTATTCCTTAAATATATTGCTCTGATTGCACTTANAATGTACTATTGCTCTAATGCTCCAAAACTAAACAGCAATATCAACACACACCTAGCAGCATGGCGTCACCGTCCCAAAGCAGCCGGTACGGCAGCCACAGCGAACGCGATCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGACAGCTCTGCGGNCGGCACAACAGTCCGCGTCGGGCAGCGGATGGGACGGACAGCGCAACAGCAGCTGCTAACGAAACCGCGGACTGCAGGAGCTGGTACGCGAAATCGATCCGACCGAGCAGCTGGACCGNAGGAGGTGGAAGACGCTGTTGCTACACGCATTANCGGCACGATNTTCGTCGCAGAACCACCGTGAACCGCNNCGTGCCTTGCCTGGCCACAAACATCGCAAAGGTGCCGNAAANGTTGGACAGTGACGAGACGTGCAATTGCATCTGGNAAGCAACTGNACCATGTGGATAACC] consensusID : consensus_7541#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 491 fasta sequence [CAGAATNGCGCCCGAGGTNCGCTGCCGTGTAGGAGCAATATCAACACACACCTAGTTCAGCATGGCGTCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGCGAACGCGATCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGGTGGGACGGACAGCGCAACGCAGCTGCTAACGAAGCCGCGGCTGCAGGAGCTGGTACGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCGTGCCTGCTGGCCAAACATCGCAAGGTGCCGAAGNGTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACGTGACCGAGGCACACAAAC] [+] EMBL AL697065 [CAGAATNGCGCCCGAGGTNCGCTGCCGTGTAGGAGCAATATCAACACACACCTAGTTCAGCATGGCGTCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGCGAACGCGATCGGCGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAACGTCCGCGTCGGGCAGCGGTGGGACGGACAGCGCAACGCAGCTGCTAACGAAGCCGCGGCTGCAGGAGCTGGTACGCGAAATCGATCCGACCGAGCAGCTGGACGAGGAGGTGGAAGAGCTGTTGCTACAGATAGCGGACGATTTCGTCGAGAACACCGTGAACGCAGCGTGCCTGCTGGCCAAACATCGCAAGGTGCCGAAGNGTGGAAGTGCGAGACGTGCAATTGCATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCCTACAAGCGAGCGACGTGACCGAGGCACACAAAC] consensusID : consensus_7541#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence [TTATGCGTGTAGACATACACACACAACCCTTAGCAGCATGGCGTCACCGTCCCAAAGGCAGCCGGCTACGGCAGCCACAGCTGAACGCGATCGGCTGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAAACCCGGGTCCCCGGCAGGTTCCGGGATGGCAAGCAGCGGTGTGTGACNGTGAACATGCTGCAACTGCATGCTTGCTAAACTGAAACGCCTCGCTGTGCCTTGGCCACATGGNGGGAAANGGGCCCCTTTGGGGGGGGTTTGGGCCCCCGTGGNCCCGCGGGCAAAAAAACN] [+] EMBL AL695825 [TTATGCGTGTAGACATACACACACAACCCTTAGCAGCATGGCGTCACCGTCCCAAAGGCAGCCGGCTACGGCAGCCACAGCTGAACGCGATCGGCTGGAAGCTCCAGTGCCAAGATTTCCTCCGGGGGCAGCTCTGCGGCCGGCACAAACCCGGGTCCCCGGCAGGTTCCGGGATGGCAAGCAGCGGTGTGTGACNGTGAACATGCTGCAACTGCATGCTTGCTAAACTGAAACGCCTCGCTGTGCCTTGGCCACATGGNGGGAAANGGGCCCCTTTGGGGGGGGTTTGGGCCCCCGTGGNCCCGCGGGCAAAAAAACN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7541#0 ------------------------------------------------------------ consensus_7541#2 ------------------------------------------------------------ consensus_7541#1 CAAGAATCCCCCGAGGTTTCGCTGCGTGTAGGAGGTTCGTAGATTTGCGATTAATTTAAT 60 consensus_7541#3 ------------------------------------------------------------ consensus_7541#0 ------------------------------------------------------------ consensus_7541#2 ------------------------------------------------------------ consensus_7541#1 TGATGTTTTCTATGGTTTCTTTATAGCTGGCATTATGCAGCACACATAAAGTGCTTCTAT 120 consensus_7541#3 ------------------------------------------------------------ consensus_7541#0 ------------------------------------------------------------ consensus_7541#2 ------------------------------------------------------------ consensus_7541#1 AAACCCCAGAAATTAAGACAAATATGGAGTACAGCACAAAAGTGAGGCTGCAAACCCCGC 180 consensus_7541#3 ------------------------------------------------------------ consensus_7541#0 ------------------------------------------------------------ consensus_7541#2 ------------------------------------------------------------ consensus_7541#1 AAAGCTGTTGCCTTTCTGTTGTGTTTAACTGTACTGTTTCTTCGTTCAATGGAAAACGGG 240 consensus_7541#3 ------------------------------------------------------------ consensus_7541#0 ----CCAAGGCTGCGGAATTCCTCGAGAACTGTTGGCCTACTAACAGTCAAAATACGC-- 54 consensus_7541#2 ------------------------------------CAGAATNGCGCCCGAGGTNCG--- 21 consensus_7541#1 AATCGTTTCGTCTAGTTATTCCTTAAATA-TATTGCTCTGATTGCACTTANAATGTACTA 299 consensus_7541#3 ------------------------------------------------------------ consensus_7541#0 --GCTGCCGTGT----------AGGAGCAATATCAACACCACACCTAG--CAGCATGGCG 100 consensus_7541#2 ---CTGCCGTGT----------AGGAGCAATATCAACAC-ACACCTAGTTCAGCATGGCG 67 consensus_7541#1 TTGCTCTAATGCTCCAAAACTAAACAGCAATATCAACAC-ACACCTAG--CAGCATGGCG 356 consensus_7541#3 ------TTATGC---------GTGTAGACATACACACACAACCCTTAG--CAGCATGGCG 43 ** ** *** **** ** * *** ********** consensus_7541#0 TCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGC-GAACGCGATCGGC-GGAAGCT 158 consensus_7541#2 TCACCGTCCCAAAGCAGCCCGGCTACGGCAGCCACAGC-GAACGCGATCGGC-GGAAGCT 125 consensus_7541#1 TCACCGTCCCAAAGCAGCCGG--TACGGCAGCCACAGC-GAACGCGATCGGC-GGAAGCT 412 consensus_7541#3 TCACCGTCCCAAAGGCAGCCGGCTACGGCAGCCACAGCTGAACGCGATCGGCTGGAAGCT 103 ************** * * *************** ************* ******* consensus_7541#0 CCAGTGCCAAGATTTCCTCCGGGGG-CAGCTCTGCGGCCGGCACAAC-GTCCGCGTCGGG 216 consensus_7541#2 CCAGTGCCAAGATTTCCTCCGGGGG-CAGCTCTGCGGCCGGCACAAC-GTCCGCGTCGGG 183 consensus_7541#1 CCAGTGCCAAGATTTCCTCCGGGGGACAGCTCTGCGGNCGGCACAACAGTCCGCGTCGGG 472 consensus_7541#3 CCAGTGCCAAGATTTCCTCCGGGGG-CAGCTCTGCGGCCGGCACAAACCCGGGTCCCCGG 162 ************************* *********** ******** * * ** consensus_7541#0 CAGCGG-TGGGACGGACAGC-GCAAC--GCAGCTGCTAACGAAGCCGCGG-CTGCAGGAG 271 consensus_7541#2 CAGCGG-TGGGACGGACAGC-GCAAC--GCAGCTGCTAACGAAGCCGCGG-CTGCAGGAG 238 consensus_7541#1 CAGCGGATGGGACGGACAGC-GCAACA-GCAGCTGCTAACGAAACCGCGGACTGCAGGAG 530 consensus_7541#3 CAGGTTCCGGGATGGCAAGCAGCGGTGTGTGACNGTGAAC-ATGCTGCAA-CTGCATGC- 219 *** **** ** *** ** * * * *** * * ** ***** * consensus_7541#0 CTGGTGCGCGAAATCGATCCGACCGAGCAGCTGGAC--GAGGAGGTGGAAGA-GCTGTTG 328 consensus_7541#2 CTGGTACGCGAAATCGATCCGACCGAGCAGCTGGAC--GAGGAGGTGGAAGA-GCTGTTG 295 consensus_7541#1 CTGGTACGCGAAATCGATCCGACCGAGCAGCTGGACCGNAGGAGGTGGAAGACGCTGTTG 590 consensus_7541#3 TTGCTAAACTGAAACGCCTCG-CTGTGC--CTTGGCCACATGGNGGGAAANGGGCCCCTT 276 ** * * ** ** ** * * ** ** * * * * * * ** ** * consensus_7541#0 CTACAGA---TAGCGG-ACGATTT-CGTCG-AGAAC-ACCGTGAAC-GCAGCGTGCCTG- 379 consensus_7541#2 CTACAGA---TAGCGG-ACGATTT-CGTCG-AGAAC-ACCGTGAAC-GCAGCGTGCCTG- 346 consensus_7541#1 CTACACGCATTANCGGCACGATNTTCGTCGCAGAACCACCGTGAACCGCNNCGTGCCTTG 650 consensus_7541#3 TGGGGGG---GGTTTG---GGCCCCCGTGG----NC--CCGCGGGCAAAAAAACN----- 319 * * *** * * *** * * consensus_7541#0 -CTGGCCA--AACATCGCAA-GGTGCCGAA--GG-TGGA-AGTG-CGAGACGTGCAATTG 430 consensus_7541#2 -CTGGCCA--AACATCGCAA-GGTGCCGAA--GNGTGGA-AGTG-CGAGACGTGCAATTG 398 consensus_7541#1 CCTGGCCACAAACATCGCAAAGGTGCCGNAAANGTTGGACAGTGACGAGACGTGCAATTG 710 consensus_7541#3 ------------------------------------------------------------ consensus_7541#0 CATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCC 490 consensus_7541#2 CATCTGGAACGCAACTGGAACATGTGGATACCGGGCTTCGGTACGGACGAGCTGAGACCC 458 consensus_7541#1 CATCTGGNAAGCAACTGNACCATGTGGATAACC--------------------------- 743 consensus_7541#3 ------------------------------------------------------------ consensus_7541#0 TACAAGCGAGCGACCGTGACAGAGGCACACAAACAGCGGTTGGCGCTCATAAGGAAGGCT 550 consensus_7541#2 TACAAGCGAGCGAC-GTGACCGAGGCACACAAAC-------------------------- 491 consensus_7541#1 ------------------------------------------------------------ consensus_7541#3 ------------------------------------------------------------ consensus_7541#0 ATCAAGAAGTATTAGCACATCCGTTTGCCCCTAGCCGATACTTTAGAGTAATAGTAATAA 610 consensus_7541#2 ------------------------------------------------------------ consensus_7541#1 ------------------------------------------------------------ consensus_7541#3 ------------------------------------------------------------ consensus_7541#0 TCATACCTACCGCAATTCATCCTTTCTGTACTGACTGGCACACGCTCATGCCCGCGCGCG 670 consensus_7541#2 ------------------------------------------------------------ consensus_7541#1 ------------------------------------------------------------ consensus_7541#3 ------------------------------------------------------------ consensus_7541#0 CACGCCATCTCTCACGATGTAACAAATCCCACAAAAATAAACTAAACTGCTACTATATTT 730 consensus_7541#2 ------------------------------------------------------------ consensus_7541#1 ------------------------------------------------------------ consensus_7541#3 ------------------------------------------------------------ consensus_7541#0 ACTTACGACACAAAAAAAAAAAAAAAAGGCCACATGTCCCCGGGCCGCAGGGTCC 785 consensus_7541#2 ------------------------------------------------------- consensus_7541#1 ------------------------------------------------------- consensus_7541#3 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||