These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7544#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1198 fasta sequence [CGCTGTTTCCGTAACCTTCGCGCTGAAAGATTGTTCGTCTATGTTAGCCGTACTTAAACGTAATTAATGTGTCATATATTCTNCATGTGTCAATGTAGAGTCCTGTTTATGGACGACGATCAACCCAAAAGGCAAAGCAAAACGAGGGCAAGCACCGGCAGACAGTAGTTTAAAAGCTCCCGCACATAATAAAGGAAACTCGTGTAAATAGTTCAATGCGAGAATGTTGAGCAAATTGTAGCAGAAGGTTAGGTCGGGTTGAAATAAGGTTTGTGTTAGGAAGATCGGGTCGGCGGAGTTTGAATGAGATTTAATATATTTCGATAAAAAGTTAGGGCAAATAATACTAAGCTAGCGCACAGAAACCATGTAAGATGTAAGCAGGTAATCTTCTTTACATCTTGTGGTTGTTGTAGAGAAGATGTTTAGTGAACAGTGTGTAAGGGATGCGTTACAGTAATACCATCCGCATCGGTGCAGCGCAGTGTTGCAACGGGCAGCAGTTCTGTCTATTGTTATTGTTGAAGC-CGTGTGTGAGTGTAAAAGCTTTCTATTTATTTATTTGCTCGTACTCGTACTTAAGCAAGAAAGTTTCGCTTCCACTGGAAAGTAAGGCCCCGTTGCCCTCGTCACTTATCTTCGTTAGTGCATCGGTTTGCCGGCATCGTGTAATTTGGTTTACCAGCAGTTGTAAAGATTCTATACTAAAAGGAGATATAATAGAGCATTTAAATGTCCTCGACACGGCAGTCTGTGTGCCAGTGTCCTGAGGCTGAGTATTAAAGCAAGCAAGCAAGCAACCAAGCAAGCAAGCAAGCATGCAAACAAACAGACACACAAAGATCCAGCAGCAGCTGCAGTGCAAATCAAGAACAATAGTGAGAACGGAACAGATAAATACTACTACTACGCGTGTTAGGTGCTAGTGTAAGTGATTGTGGTTGAATCATCATTGTAAATATCCTTTCCAACAAAGAAGCTACGAGCAGTAGTAGTACTAGGTGGCGAGCTAGAGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTAACCATTATCGAAGTAAATGAGTGTCGAACCTCGTCGTTAACCGCTCCGCAGGCGAGTGTGTGAGTAGTTCCAAACACGCTAGAGATAATAAATGTGGTACAATTACCGTAAAAAAAAAAAAAAAAAAAAAAGGGCACAGGGGGGCGGG] [+] EMBL BX620374 [CGCTGTTTCCGTAACCTTCGCGCTGAAAGATTGTTCGTCTATGTTAGCCGTACTTAAACGTAATTAATGTGTCATATATTCTNCATGTGTCAATGTAGAGTCCTGTTTATGGACGACGATCAACCCAAAAGGCAAAGCAAAACGAGGGCAAGCACCGGCAGACAGTAGTTTAAAAGCTCCCGCACATAATAAAGGAAACTCGTGTAAATAGTTCAATGCGAGAATGTTGAGCAAATTGTAGTAGAAGGTTAGGTCGGGTTGAAATAAGGTTTGTGTTAGGAAGATCGGGTCGGCGGAATTTGAATGAGATTTAATATATATTGATAAAAAGTTAGGGCAAATAATACTAAGCTAGCGCACAGAAACCATGTAAGATGTAAGCAGGTAATCTTCTTTACATCTTGTGGTTGTTGTANAGAAGATGTTTAGTGAACAGTGTGTAAGGGATGCGTTACAGTAATACCATCCGCATCGGTGCAGCGCAGTGTTGCAACGGGCAGCAGNTCTGTCTATTGTTATTGTTG ] [+] EMBL CNS09PL8 [ ggGTTCAATGCGAGCATGTTGAGCAAATTGTAGCAGAAGGTTAGGTCGGGTTGAAATAAGGTTTGTGTTAGGAAGATCGGGTCGGCGGAGTTTGAATGAGATTTAATATATTTCGATAAAAAGTTAGGGCAAATAATACTAAGCTAGCGCACAGAAACCATGTAAGATGTAAGCAGGTAATCTTCTTTACATCTTGTGGTTGTTGTAGAGAAGATGTTTAGTGAACAGTGTGTAAGGGATGCGTTACAGTAATACCATCCGCATCGGTGCAGCGCAGTGTTGCAACGGGCAGCAGTTCTGTCTATTGTTATTGTTGAAGCGCGTGTGTGAGTGTAAAAGCTTTCTATTTATTTATTTGCTCGTACTCGTACTTAAGCAAGAAAGTTTCGCTTCCACTGGAAAGTAAGGCCCCGTTGCCCTCGTCACTTATCTTCGTTAGTGCATCGGTTTGCCGGCATCGTGTAATTTGGTTTACCAGCAGTTGTAAAGATTCTATACTAAAAGGAGATATAATAGAGCATTTAAATGTCCTCGACACGGCAGTCTGTGTGCCAGTATCCTGAGGCTGAGTATTAAAGCAAGCAAGCAAGCAACCAAGCAAGCAAGCAAGCATGCAAACAAACAGACACACAAAGATCCAGCAGCAGCTGCAGTGCAAATCAAGAACAATAGTGAGAACGGAACAGATAAATACTACTACTACGCGTGTTAGGTGCTAGTGTAAGTGATTGTGGTTGAATCATCATTGTAAATATCCTTTCCAACAAAGAAGCTACGAGCAGTAGTAGTACTAGGTGGCGAGCTAGAGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTAACCATTATCGAAGTAAATGAGTGTCGAACCTCGTCGTTAACCGCTCCGCAGcg ] [+] EMBL CNS09ILD [ AGCAAATTGTAGCAGAAGGTTAGGTCGGGTTGAAATAAGGTTTGTGTTAGGAAGATCGGGTCGGCGGAGTTTGAATGAGATTTAATATATTTCGATAAAAAGTTAGGGCAAATAATACTAAGCTAGGGCACAGAAACCATGTAAGATGTAAGCAGGTAATCTTCTTTACATCTTGTGGTTGTTGTAGAGAAGATGTTTAGTGAACAGTGTGTAAGGGATGCGTTACAGTAATACCATCCGCATCGGTGCAGCGCAGTGTTGCAACGGGCAGCAGTTCTGTCTATTGTTATTGTTGAAGC CGTGTGTGAGTGTAAAAGCTTTCTATTTATTTATTTGCTCGTACTCGTACTTAAGCAAGAAAGTTTCGCTTCCACTGGAAAGTAAGGCCCCGTTGCCCTCGTCACTTATCTTCGTTAGTGCATCGGTTTGCCGGCATCGTGTAATTTGGTTTACCAGCAGTTGTAAAGATTCTATACTAAAAGGAGATATAATAGAGCATTTAAATGTCCTCGACACGGCAGTCTGTGTGCCAGTGTCCTGAGGCTGAGTATTAAAGCAAGCAAGCAAGCAACCAAGCAAGCAAGCAAGCATGCAAACAAACAGACACACAAAGATCCAGCAGCAGCTGCAGTGCAAATCAAGAACAATAGTGAAAACGGAACAGATAAATACTACTACTACGCGTGTTAGGTGCTAGTGTAAGTGATTGTGGTTGAATCATCATTGTAAATATCCTTTCCAACAAAGAAGCTACGAGCAGTAGTAGTACTAGGTGGCGAGCTAGAGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTCACCATTATCGAAGTAAATGAGTGTCGAACCTCGTCGTTAACCGCTCCGCA GCGAGTGTGTGAGTAGTTCCAAACACGCTAGAGATAATAAATGTGGTACAATTACCGTAAAAAAAAAAAAAAAAAAAAAAGGGCACAGGGGGGCGGG] [-] EMBL CNS09PL9 [ AGTTTGAATGAGATTTAATATATTTCGATAAAAAGTTAGGGCAAATAATACTAAAGTAGCGCACAGAAACCATGTAAGATGTAAGCAGGTAATCTTCTTTACATCTTGTGGTTGTTGTAGAGAAGATGTTTAGTGAACAGTGTGTAAGGGATGCGTTACAGTAATACCATCCGCATCGGTGCAGCGCAGTGTTGCAACGGGCAGCAGTTCTGTCTATTGTTATTGTTGAAGC CGTGTGTGAGTGTAAAAGCTTTCTATTTATTTATTTGCTCGTACTCGTACTTAAGCAAGAAAGTTTCGCTTCCACTGGAAAGTAAGGCCCCGTTGCCCTCGTCACTTATCTTCGTTAGTGCATCGGTTTGCCGGCATCGTGTAATTTGGTTTACCAGCAGTTGTAAAGATTCTATACTAAAAGGAGATATAATAGAGCATTTAAATGTCCTCGACACGGCAGTCTGTGTGCCAGTGTCCTGAGGCTGAGTATTAAAGCAAGCAAGCAAGCAACCAAGCAAGCAAGCAAGCATGCAAACAAACAAACACACAAAGATCCAGCAGCAGCTGCAGTGCAAATCAAGAACAATAGTGAGAACGGAACAGATAAATACTACTACTACGCGTGTTAGGTGCTAGTGTAAGTGATTGTGGTTGAATCATCATTGTAAATATCCTTTCCAACAAAGAAGCTACGAGCAGTAGTAGTACTAGGTGGCGAGCTAGAGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTAACCATTATCGAAGTAAATGAGTGTCGAACCTCGTCGTTAACCCCTCCGCAGGCGAGTGTGTGAGTAGTTCCAAACACGCTAGAGATAATAAATGTGGTACAATTACCGTAAAAAAAAAA ] [-] EMBL CNS09ILE [ TGCATCGGTTTGCCGGCATCGTGTAATTTGGTTTACCAGCAGTTGTAAAGATTCTATACTAAAAGGGGATATAATAGAGCATTTAAATGTCCTCGACACGGCAGTCTGTGTGCCAGTGTCCTGAGGCTGAGTATTAAAGCAAGCAAGCAAGCAACCAAGCAAGCAAGCAAGCATGCAAACAAACAGACACACAAAGATCCAGCAGCAGCTGCAGTGCAAATCAAGAACAATAGTGAAAACGGAACAGATAAATACTACTACTACGCGTGTTAGGTGCTAGTGTAAGTGATTGTGGTTGAATCATCATTGTAAATATCCTTTCCAACAAAGAAGCTACGAGCAGTAGTAGTACTAGGTGGCGAGCTAGAGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTAACCATTATCGAAGTAAATGAGTGTCGAACCTCGTCGTTAACCCCTCCGCAGGCGAGTGTGTGAGTAGTTCCAAACACGCTAGAGATAATAAATGT ] [+] EMBL BX614952 [ GAGCAGTAGTAGTACTAGGTGGCGAGCTAGAGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTAACCATTATCGAAGTAAATGAGTGTCGAACCTCGTCGTTAACCGCTCCGCAGGCGAGTGTGTGAGTAGTTCCAAACACGCTAGAGATAATAAATGTGGTA ] consensusID : consensus_7544#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CTCGGCAATCGGAACCGTACTGGACCTTTCGCAGACGCGAATGTGTATATAATATATACGAGGCAACAATTATTGATTAATTAAATGAAATTATAAACCCACACCACGGTCTCCCCTCTTCGAAACATTGCAGCAGCAGCACCAGCAGCAGTAAGTGCGGCGGCAACAGGATACATAATTATACAGCATGACAGCATGACAATTGGATCAGTAGCGATAACAGCGATGCAAAACATCCGTGGAATCTCATCCGTTGAAGAGTTGCATTGTGGTCTGTACGGTTTTAATGATATTTATACAGTCACATCGTCCACACGAAGCCGGCAGCAGCCCATGAGCATGGTTTTGTTTAGTTTGTTTCTATGAGATTAGCCGAAATTAAGGCCCAAACAGGGACAGAAAAGAATAGCGCCCGATGCCCGATCAATCAAGACTATCTTTAAGGATCGTTTGGGATGTCGCCATTAATGACATACAGGCCTTTAGAGACAGGATTATTAATCCCTTTCTGTAGAAAGATTGTTTTGTAGTATCTTCTTTTTTTAATTATGCTAAAATATGTATAATAAAATCAATACACGCTATATTTTTGTAACCGAGCTGATCAAAGAGGAAAAATAAAATAAATT] [+] EMBL BX617551 [CTCGGCAATCGGAACCGTACTGGACCTTTCGCAGACGCGAATGTGTATATAATATATACGAGGCAACAATTATTGATTAATTAAATGAAATTATAAACCCACACCACGGTCTCCCCTCTTCGAAACATTGCAGCAGCAGCACCAGCAGCAGTAAGTGCGGCGGCAACAGGATACATAATTATACAGCATGACAGCATGACAATTGGATCAGTAGCGATAACAGCGATGCAAAACATCCGTGGAATCTCATCCGTTGAAGAGTTGCATTGTGGTCTGTACGGTTTTAATGATATTTATACAGTCACATCGTCCACACGAAGCCGGCAGCAGCCCATGAGCATGGTTTTGTTTAGTTTGTTTCTATGAGATTAGCCGAAATTAAGGCCCAAACAGGGACAGAAAAGAATAGCGCCCGATGCCCGATCAATCAAGACTATCTTTAAGGATCGTTTGGGATGTCGCCATTAATGACATACAGGCCTTTAGAGACAGGATTATTAATCCCTTTCTGTAGAAAGATTGTTTTGTAGTATCTTCTTTTTTTAATTATGCTAAAATATGTATAATAAAATCAATACACGCTATATTTTTGTAACCGAGCTGATCAAAGAGGAAAAATAAAATAAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7544#0 CGCTGTTTCCGTAACCTTCGCGCTGAAAGATTGTTCGTCTATGTTAGCCGTACTTAAACG 60 consensus_7544#1 ------------------------------------------------------------ consensus_7544#0 TAATTAATGTGTCATATATTCTNCATGTGTCAATGTAGAGTCCTGTTTATGGACGACGAT 120 consensus_7544#1 ------------------CTCGGCAATCGGAACCGTACTGGACCTTTCGCAGACGCGAAT 42 ** ** * * *** * * ** **** ** consensus_7544#0 CAACCCAAAAGGCAAAGCAAAACGAGGGCAAGCACCGGCAGACAGTAGTTTAAAAGCTCC 180 consensus_7544#1 GTGTATATAATATATA-CGAGGCAACAATTATTGATTAATTAAATGAAATTATAAACCC- 100 * ** * * * * * * * * * * *** ** * * consensus_7544#0 CGCACATAATAAAGGAAACTCGTGTAAATAGTTCAATGCGAGAATGTTGAGCA--AATTG 238 consensus_7544#1 ---ACACCACGGTCTCCCCTCTTCGAAACATTGCAGCAGCAGCACCAGCAGCAGTAAGTG 157 *** * *** * *** * * ** ** * **** ** ** consensus_7544#0 TAGCAGAAGGTTAGGTCGGGTTGAAATAAGGTTTG-TGTTAGGAAGATCGGGTCGGCGGA 297 consensus_7544#1 CGGCGGCAA--CAGGATACATAATTATACAGCATGACAGCATGACAATTGGATCAGTAGC 215 ** * * *** * *** * ** * ** ** ** ** * * consensus_7544#0 GTTTGAATGAGATTTAATATATTTCGATAAAAAGTTAGGGCAAATAATACTAAGCTAGCG 357 consensus_7544#1 GAT-AACAGCGATGCAAAACATCCGTGGAATCTCATCCGTTGAAGAGTTGCATTGTGGTC 274 * * * * *** ** * ** ** * * ** * * * * * consensus_7544#0 CACAGAAACCATGTAAGATGTAAGCAGGTA-ATCTTCTTTAC--ATCTTGTGGTTGTTGT 414 consensus_7544#1 TGTACGGTTTTAATGATATTTATACAGTCACATCGTCCACACGAAGCCGGCAGCAGCCCA 334 * * * ** ** *** * *** ** ** * * * * * consensus_7544#0 AGAGAAGATGTTTAGTGAACA-GTGTGTAAGGGATGCGTTACAGTAATACCATCCGCATC 473 consensus_7544#1 TGAGCATGGTTTTGTTTAGTTTGTTTCTATGAGATTAGCCGAAAT--TAAGGCCCAAACA 392 *** * *** * * ** * ** * *** * * * ** ** * consensus_7544#0 GGTGCAGCGCAGTGTTGCAACGGGCAGCAGTTCTGTCTATTGTTATTGTTGAAGCCGTGT 533 consensus_7544#1 GGGACAGAAAAGAATAGCGCCCGATGCCCGATCAATC-AAGACTATCTTTAAGGATC--- 448 ** *** ** * ** * * * * ** ** * *** ** * * consensus_7544#0 GTGAGTGTAAAAGCTTTCTATTTATTTATTTGCTCGTACTCGTACTTAAGCAAGAAAGTT 593 consensus_7544#1 ----GTTTGGGATGTCGCCATT-AATGACATACAGGCCTTTAGAGACAGG-ATTATTAAT 502 ** * * * * *** * * * * * * * * * * * * * consensus_7544#0 TCGCTTCCACTGGAAAGTAAGGCCCCGTTGCCCTCGTCACTTATCTTCGTTAGTGCATCG 653 consensus_7544#1 CCCTTTCTGTAGAAAGATTGTTTTGTAGTATCTTCTTTTTTTAATTATGCTAAAATAT-- 560 * *** * ** * * * ** * *** * * ** ** consensus_7544#0 GTTTGCCGGCATCGTGTAATTTGGTTTACCAGCAGTTGTAAAGATTCTATACTAAAAGGA 713 consensus_7544#1 GTATAATAAAATC----AATACACGCTAT--ATTTTTGTAACCGAGCTGATCAAAGAGGA 614 ** * *** *** ** ****** ** * ** **** consensus_7544#0 GATATAATAGAGCATTTAAATGTCCTCGACACGGCAGTCTGTGTGCCAGTGTCCTGAGGC 773 consensus_7544#1 AAAATAAAATAA-ATT-------------------------------------------- 629 * **** * * *** consensus_7544#0 TGAGTATTAAAGCAAGCAAGCAAGCAACCAAGCAAGCAAGCAAGCATGCAAACAAACAGA 833 consensus_7544#1 ------------------------------------------------------------ consensus_7544#0 CACACAAAGATCCAGCAGCAGCTGCAGTGCAAATCAAGAACAATAGTGAGAACGGAACAG 893 consensus_7544#1 ------------------------------------------------------------ consensus_7544#0 ATAAATACTACTACTACGCGTGTTAGGTGCTAGTGTAAGTGATTGTGGTTGAATCATCAT 953 consensus_7544#1 ------------------------------------------------------------ consensus_7544#0 TGTAAATATCCTTTCCAACAAAGAAGCTACGAGCAGTAGTAGTACTAGGTGGCGAGCTAG 1013 consensus_7544#1 ------------------------------------------------------------ consensus_7544#0 AGGCGTGCGCGAAAGGATGATACAGTGAGCGCGAGTAACCATTATCGAAGTAAATGAGTG 1073 consensus_7544#1 ------------------------------------------------------------ consensus_7544#0 TCGAACCTCGTCGTTAACCGCTCCGCAGGCGAGTGTGTGAGTAGTTCCAAACACGCTAGA 1133 consensus_7544#1 ------------------------------------------------------------ consensus_7544#0 GATAATAAATGTGGTACAATTACCGTAAAAAAAAAAAAAAAAAAAAAAGGGCACAGGGGG 1193 consensus_7544#1 ------------------------------------------------------------ consensus_7544#0 GCGGG 1198 consensus_7544#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||