|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7571#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 841 fasta sequence
[TGGACTTCGAACTAATTTGTGAATACAGATT-TGTTTATTTACGTTGTGTGAACGTACATCTGAGCAGAATAGTTTTAC-TTTTGTATGATTCAAAATTACTCCAAAGACAGCTTCTACATTCTCATATTTAAGCTGTGCTTCAGTACTTTAGGAAGCTACGATGTTGCGGACTCATTTAAAACGTG-GAACGGAAAAATGGTTGCACTTGACAAACCTTCGTTGCAGATCCCAGTCTGCTGCCGGAAAACAATGCTGGAAATGTAGCAGTTTAGATATTAACAATACGTTTTTTTGTGCT-TCGTGCGGTGTGTTACGCGAGTCGGCTGA-AAAAGAAGACTACTTCGAACTATTGAAACTGAAGAAAGATTTCAACATAGACACTTTGAAACTCGTACAGAACTATCGCCATATCCAAAGTATGATACAT-CCAGACAAGTTTGC-TCAGAAATCAGAGCATGAAAAGGC-AATCGCATTAGAATGGAGCTCTTTAGTTAACAAAGCGTACAAAACACTTTCCAA-GTCCATTG-AGA-GGGGCAAATATTTACTAACGCTTAATGGAGTAACTATATCTGAAGACAATACATCACTTGATAAAGAATTTCTCTTAGCAATGATGGATTTAAATGAACCAGTGGAGGATGCAGAAACTGCCGATGAACTAAAAAATATAGCTTCAAATGTATCTGTAAATATTGAACATCTGAATTTAAAGCTAGTCCAACACTTTAAAGCCAATGATTTGGATGGCGCTAAGGAAGCTATCATACG-TTTAAAATATATGAACAACATTGAAAGGACCGTAAAAGAAAAGTTTTTACATTTTAATCTAAAGTAGTAAACA]
[+] EMBL BX607955 [TGGACTTCGAACTAATTTGTGAATACAGATT TGTTTATTTACGTTGTGTGAACGTACATCTGAGCAGAATAGTTTTAC TTTTGTATGATTCAAAATTACTCCAAAGACAGCTTCTACATTCTCATATTTAAGCTGTGCTTCAGTACTTTAGGAAGCTACGATGTTGCGGACTCATTTAAAACGTG GAACGGAAAAATGGTTGCACTTGACAAACCTTCGTTGCAGATCCCAGTCTGCTGCCGGAAAACAATGCTGGAAATGTAGCAGTTTAGATATTAACAATACGTTTTTTTGTGCT TCGTGCGGTGTGTTACGCGAGTCGGCTGA AAAAGAAGACTACTTCGAACTATTGAAACTGAAGAAAGATTTCAACATAGACACTTTGAAACTCGTACAGAACTATCGCCATATCCAAAGTATGATACAT CCAGACAAGTTTGC TCAGAAATCAGAGCATGAAAAGGC AATCGCATTAGAATGGAGCTCTTTAGTTAACAAAGCGTACAAAACACTTTCCAA GTCCATTG AGA GGGGCAAATATTTAC ]
[+] EMBL CNS09HG2 [ ATTTGTGAATACAGATTATGTTTATTTACGTTGTGTGAACGTACATCTGAGCAGAATAGTTTTAC TTTTGTATGATTCAAAATTACTCCAAGGACAGCTTCTACATTCTCATATTTAAGCTGTGCTTCAGTACTTTAGGAAGCTACGATGTTGCGGACTCATTTAAAACGTG GAACGGAAAAATGGTTGCACTTGACAAACCTTCGTTGCAGATCCCAGTCTGCTGCCGGAAAACAATGCTGGAAATGTAGCAGTTCAGATATTAACAATACGTTTTTTTGTGCT TCGTGCGGTGTGTTACGCGAGACGGCTGA AAAGGAAGACTACTTCGAACTATTGAAACTGAAGAAAGAATTCAACATAGACACTTTGAAACTCGTACAGAACTATCGCCATATCCAAAGTATGATACAT CCAGACAAGTTTGC TCAGAAATCAGAGCATGAAAAGGC AATCGCATTAGAATGGAGCTCTTTAGTTAACAAAGCGTACAAAACACTTTCCAA GTCCATTG AGA GGGGCAAATATTTACTAACGCTTAATGGAGTAACTATATCTGAAGACAATACATCACTTGATAAAGAATTTCTCTTAGCAATGATGGATTTAAATGAACCAGTGGAGGATGCAGAAACTGCCGATGAACTAAAAAATATAGCTTCAAATGTATCTGTAAATATTGAACATCTGAATTTAAAGCTAGTCCAACACTTTAAAGCCAATGATTTGGATGGCGCTAAGGAAGCTATCATACG TTTAAAATAT ]
[+] EMBL AL695232 [ aGAATCCCGA GGTTA TACGTTGTGTGAACGTACATCTGAGCAGAATAGTTTTAC TTTTGTATGATTCAAAATTACTCCAAAGACAGCTTCTACATTCTCATATTTAAGCTGTGCTTCAGTACTTTAGGAAGCTACGATGTTGCGGACTCATTTAAAACGTG GAACGGAAAAATGGTTGCACTTGACAAACCTTCGTTGCAGATCCCAGTCTGCTG CGGAAAACAATGCTGGAAATGTAGCAGTTTAGATATTAACAATACGTTTTTTTGTGCTCTCGTGCGGTGTGTTACGCGAGTCGGCTGACAAAAGAAGACTACTTCGAACTATTGAAACTGAAGAAAGATTTCAACATAGACACTTTGAAACTCGTACAGAACTATCGCCATATCCAAAGTATGATACATCCCAGACAAGTTTGCGTCAGAAATCAGAGCATGAAAAGGCGAATCGCATTAGAATGGAGCTCTTTAGTTAACAAAGCGTACAAAACACTTTCCAAGGTCCATTGCAGAGGGGGCAACTATTTACTAACG ]
[+] EMBL AL694632 [ ccgaggttaT TGTTTATTTACGTTGTGTGAACGTACATCTGAGCAGAATAGTTTTAC TTTGTATGATTCAAAATTACTCCAAAGACAGCTTCTACATTCTCATATTTAAGCTGTGCTTCAGTACTTTAGGAAGCTACGATGTTGCGGACTCATTTAAAACGTG GAACGGAAAAATGGTTGCACTTGACAAACCTTCGTTGCAGATCCCAGTCTGCTG CGGAAAACAATGCTGGAAATGTAGCAGTTTAGATATTAACAATACG TGTGCT TCGTGCGGTGTGTTACGCGAGTCGGCTGA AAAAGAAGACTACTTCGAACTATTGAAACTGAAGAAAGATTTCAACATAGACACTTTGAAACTCGTACAGAACTATCGCCATATCCAAAGTATGATACAT CCAGACAAGTTTGC TCAGAAATCAGAGCATGAAAAGGC AATCGCATTAGAATGGAGCTCTTTAGTTAACAAAGCGTACAAAACACTTTCCAA GTCCATTG AGA GGGGCAAATATTTACTAACGCTTAATGGAGTAACTATATCTGAAGACAATACATCACTTGATAAAGAATTTCTCT ]
[-] EMBL CNS09HG3 [ TCTGAGCAGAATAGTTTTAC TTTTTTTTGATTCAAAATTACTCCAAGGACAGCTTCTACATTCTCATATTTAAGCTGTGCTTCAGTACTTTAGGAAGCTACGATGTTGCGGACTCATTTAAAACGTG GAACGGAAAAATGG TGCACTTGACAAACCTTCGTTGCAGATCCCAGTCTGCTGCCGGAAAACAATGCTGGAAATGTAGCAGTTCAGATATTAACAATACGTTTTTTTGTGCT TCGTGCGGTGTGTTACGCGAGACGGCTGA AAAGGAAGACTACTTCGAACTATTGAAACTGAAGAAAGAATTCAACATAGACACTTTGAAACTCGTACAGAACTATCGCCATATCCAAAGTATGATACAT CCAGACAAGTTTGC TCAGAAATCAGAGCATGAAAAGGC AATCGCATTAGAATGGAGCTCTTTAGTTAACAAAGCGTACAAAACACTTTCCAA GTCCATTG AGA GGGGCAAATATTTACTAACGCTTAATGGAGTAACTATATCTGAAGACAATACATCACTTGATAAAGAATTTCTCTTAGCAATGATGGATTTAAATGAACCAGTGGAGGATGCAGAAACTGCCGATGAACTAAAAAATATAGCTTCAAATGTATCTGTAAATATTGAACATCTGAATTTAAAGCTAGTCCAACACTTTAAAGCCAATGATTTGGATGGCGCTAAGGAAGCTATCATACGTTTTAAAATATATGAACAACATTGAAAGGACCGTAAAAGAAAAGTTTTTACATTTTAATCTAAAGTAGTAAACA]
[+] EMBL CNS099OE [ TGAGCAGAATAGTTTTACTTTTTGTATGATTCAAAATTACTCCAAGGACAGCTTCTACATTCTCATATTTAAGCTGTGCTTCAGTACTTTAGGAAGCTACGATGTTGCGGACTCATTTAAAACGTGTGAACGGAAAAATGGTTGCACTTGACAAACCTTCGTTGCAGATCCCAGTCTGCTGCCGGAAAACAATGCTGGAAATGTAGCAGTTCAGATATTAACAATACGTTTTTTTGTGCT TCGTGCGGTGTGTTACGCGAGACGGCTGA AAAAGAAGACTACTTCGAACTATTGAAACTGAAGAAAGAATTCAACATAGACACTTTGAAACTCGTACAGAACT ]
consensusID : consensus_7571#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 811 fasta sequence
[GAATCCCCCGAGGTTATTTGTTTATTTACGTTGTGTGAACGTACATCTGAGCAGAATAGTTTTACTTTTGTATGATTCAAAATTACTCCAAAGACAGCTTCTACATTCTCATATTTAAGCTGTGCTTCAGTACTTTAGGAAGCTACGATGTTGCGGACTCATTTAAAACGTGGAACGGACAAAATGGTTGCCACTTGACAAACCTTCGTTGCAGATCCCAGTCTGCTGCCGGAAAACAATGCTGGACAATGTAGCAGTTTAGATATTAACAATACGTTTTTTGTGCTTCGCTGCGGTGTGTTACGCGCAGTCGGCTGAAAAAGAAGACTACTTCGAACTCATTGNGAACTGNAGAGAAAGATTTCAACATAGACACTTTGANAACTCGTACAGAACTATCGCGCATATCCAAAGTATGATACATCCAGACNNGTTTGGTCACGAAATCAGAGCATGNCACAGGCACATCGCCATTAGCAATGGCAGCTCCTTNTANTTAACACAAGCGTACAAAACACTTTCCAAGTCCATATGAGAGGGGCAATCATTTATAACGCTTAATGGNGTAACTCATATCCTGAAGACAATACATCACTTGATAAAAGAATTTCTCTTTACGNNATCGACTGGGATTCTTACAAATGAATCACNCATGGGAGGATTGCCACCAANANCTGGCCGCATGAAACTTACAAAAAACTACTTACGCTTTCNAACTCGTATCCTCGNACAANTATACGGAACAATCTGAATCTAANAAGACTAGNACCAANCACCTTACAAAGCCCCCGANTTAGGATTGGCCNCACGG]
[+] EMBL AL694562 [GAATCCCCCGAGGTTATTTGTTTATTTACGTTGTGTGAACGTACATCTGAGCAGAATAGTTTTACTTTTGTATGATTCAAAATTACTCCAAAGACAGCTTCTACATTCTCATATTTAAGCTGTGCTTCAGTACTTTAGGAAGCTACGATGTTGCGGACTCATTTAAAACGTGGAACGGACAAAATGGTTGCCACTTGACAAACCTTCGTTGCAGATCCCAGTCTGCTGCCGGAAAACAATGCTGGACAATGTAGCAGTTTAGATATTAACAATACGTTTTTTGTGCTTCGCTGCGGTGTGTTACGCGCAGTCGGCTGAAAAAGAAGACTACTTCGAACTCATTGNGAACTGNAGAGAAAGATTTCAACATAGACACTTTGANAACTCGTACAGAACTATCGCGCATATCCAAAGTATGATACATCCAGACNNGTTTGGTCACGAAATCAGAGCATGNCACAGGCACATCGCCATTAGCAATGGCAGCTCCTTNTANTTAACACAAGCGTACAAAACACTTTCCAAGTCCATATGAGAGGGGCAATCATTTATAACGCTTAATGGNGTAACTCATATCCTGAAGACAATACATCACTTGATAAAAGAATTTCTCTTTACGNNATCGACTGGGATTCTTACAAATGAATCACNCATGGGAGGATTGCCACCAANANCTGGCCGCATGAAACTTACAAAAAACTACTTACGCTTTCNAACTCGTATCCTCGNACAANTATACGGAACAATCTGAATCTAANAAGACTAGNACCAANCACCTTACAAAGCCCCCGANTTAGGATTGGCCNCACGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7571#0 TGGACTTCGAACTAATTTGTGAATACAGATTTGTTTATTTACGTTGTGTGAACGTACATC 60
consensus_7571#1 ------------GAATCCCCCGAGGTT-ATTTGTTTATTTACGTTGTGTGAACGTACATC 47
*** * ********************************
consensus_7571#0 TGAGCAGAATAGTTTTACTTTTGTATGATTCAAAATTACTCCAAAGACAGCTTCTACATT 120
consensus_7571#1 TGAGCAGAATAGTTTTACTTTTGTATGATTCAAAATTACTCCAAAGACAGCTTCTACATT 107
************************************************************
consensus_7571#0 CTCATATTTAAGCTGTGCTTCAGTACTTTAGGAAGCTACGATGTTGCGGACTCATTTAAA 180
consensus_7571#1 CTCATATTTAAGCTGTGCTTCAGTACTTTAGGAAGCTACGATGTTGCGGACTCATTTAAA 167
************************************************************
consensus_7571#0 ACGTGGAACGGA-AAAATGGTTGC-ACTTGACAAACCTTCGTTGCAGATCCCAGTCTGCT 238
consensus_7571#1 ACGTGGAACGGACAAAATGGTTGCCACTTGACAAACCTTCGTTGCAGATCCCAGTCTGCT 227
************ *********** ***********************************
consensus_7571#0 GCCGGAAAACAATGCTGGA-AATGTAGCAGTTTAGATATTAACAATACGTTTTTTTGTGC 297
consensus_7571#1 GCCGGAAAACAATGCTGGACAATGTAGCAGTTTAGATATTAACAATACGTTTTTT-GTGC 286
******************* *********************************** ****
consensus_7571#0 TTCG-TGCGGTGTGTTACGCG-AGTCGGCTGAAAAAGAAGACTACTTCGAACT-ATTGA- 353
consensus_7571#1 TTCGCTGCGGTGTGTTACGCGCAGTCGGCTGAAAAAGAAGACTACTTCGAACTCATTGNG 346
**** **************** ******************************* ****
consensus_7571#0 AACTGAAGA--AAGATTTCAACATAGACACTTTGAAA-CTCGTACAGAACTATCGC-CAT 409
consensus_7571#1 AACTGNAGAGAAAGATTTCAACATAGACACTTTGANAACTCGTACAGAACTATCGCGCAT 406
***** *** ************************ * ****************** ***
consensus_7571#0 ATCCAAAGTATGATACATCCAGACAAGTTTGCTCA-GAAATCAGAGCATGAAA-AGGCA- 466
consensus_7571#1 ATCCAAAGTATGATACATCCAGACNNGTTTGGTCACGAAATCAGAGCATGNCACAGGCAC 466
************************ ***** *** ************** * *****
consensus_7571#0 ATCGC-ATTAG-AATGG-AGCTC--TTTAGTTAACA-AAGCGTACAAAACACTTTCCAAG 520
consensus_7571#1 ATCGCCATTAGCAATGGCAGCTCCTTNTANTTAACACAAGCGTACAAAACACTTTCCAAG 526
***** ***** ***** ***** * ** ****** ***********************
consensus_7571#0 TCCAT-TGAGAGGGGCAAATATTTACTAACGCTTAATGGAGTAACT-ATATC-TGAAGAC 577
consensus_7571#1 TCCATATGAGAGGGGCAATCATTTA-TAACGCTTAATGGNGTAACTCATATCCTGAAGAC 585
***** ************ ***** ************* ****** ***** *******
consensus_7571#0 AATACATCACTTGATAAA-GAATTTCTCTTAGCAATGATGGATTTAAATGA--ACCAGTG 634
consensus_7571#1 AATACATCACTTGATAAAAGAATTTCTCTTTACGNN-ATCGACTGGGATTCTTACAAATG 644
****************** *********** * ** ** * ** ** * **
consensus_7571#0 GAGGATGCAGAAACTGCCGATGAACTAAAAAATATAGCTTCAAATGTATCTGTAAATATT 694
consensus_7571#1 AATCACNCATGGGAGGATTGCCACCAANANCTGGCCGCATGAAACTTACAAAAAACTACT 704
* * ** * * * * * ** * *** ** ** ** *
consensus_7571#0 GA-ACATCTGAATTTAAAGCTAGTCCAACACTTTAAAGCCAATGATTTGGATGGCGCTAA 753
consensus_7571#1 TACGCTTTCNAACTCGTATCC--TCGNACAANT-ATACGGAACAATCTGAATC-TAANAA 760
* * * ** * * * ** *** * * * ** ** ** ** **
consensus_7571#0 GGAAGCTATCATACGTTTAAAATATATGAACAACATTGAAAGGACCGTAAAAGAAAAGTT 813
consensus_7571#1 GACTAGNACCAANCACCTTACAAA-GCCCCCGANTTAGGATTGGCCNCACGG-------- 811
* * ** * * * * * * * * * * * ** *
consensus_7571#0 TTTACATTTTAATCTAAAGTAGTAAACA 841
consensus_7571#1 ----------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||