These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7591#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 758 fasta sequence [GCGCAACATGCCTGNCTTTTTGTTGTTANTTTTTTCTTCCTTCTTCTAGGGTACATTTAAACGAGATAGGATTATGGGGAAGCAGCTCCTTCCCCTGTGTTTTCGCTGTAAGCAAGAAATTGTACTGCAGGATTATTTGTGAACAAAGAAGAAAAGCATTAGAAAAAGAAAGCAAAACGGTGGAAGTGTAATTGAAACTGAAATCAAACACACAGCGCAGAAGCTAGAGATAAGGATTTATTAGCTAAGTACAATCGTTAGTAGAAGCGGCGAGCGGCAGCTCGCAGCTGCAAAATGGGGTGGAAAACCAGTGGTTGAATTTGCAACAAAAGCGACACAAATATCGTGAGTGTGTTGATTGATCGTGTTTAGCTGAAGGGAAAGCGAATGATAGGGGAGAAAAGTACACAACGTAGTACATACGTAAACACAGCAAATGTTGTTAAGGCTGGCGCGTGTGCGCGTTTGTGTTGCAACATACGAGCTCTAACGAAAAGAGGAAACAAAAAAACGGGACAAAATCAGTAATAAATATAGTTTGAAAGTGACAATGAAAAGCAAAAAACGCGAAGGGTTGTGGAGTAAAAAAAAATAGTCCCAAAACGGTCATTGCAGATTGCAGATCGCGTTGCTTACGGCAATTTTGCTCTACCCTTATTTGTAGCAACAATTTCCGCATTTCCGCACACATTCCGCATTAGCAGCTGCCCTATTTTGCCTTCTCTCTCGTGTGTTGCATTTTGGTTTGCTGATTAAGG] [+] EMBL BX466892 [GCGCAACATGCCTGNCTTTTTGTTGTTANTTTTTTCTTCCTTCTTCTAGGGTACATTTAAACGAGATAGGATTATGGGGAAGCAGCTCCTTCCCCTGTGTTTTCGCTGTAAGCAAGAAATTGTACTGCAGGATTATTTGTGAACAAAGAAGAAAAGCATTAGAAAAAGAAAGCAAAACGGTGGAAGTGTAATTGAAACTGAAATCAAACACACAGCGCAGAAGCTAGAGATAAGGATTTATTAGCTAAGTACAATCGTTAGTAGAAGCGGCGAGCGGCAGCTCGCAGCTGCAAAATGGGGTGGAAAACCAGTGGTTGAATTTGCAACAAAAGCGACACAAATATCGTGAGTGTGTTGATTGATCGTGTTTAGCTGAAGGGAAAGCGAATGATAGGGGAGAAAAGTACACAACGTAGTACATACGTAAACACAGCAAATGTTGTTAAGGCTGGCGCGTGTGCGCGTTTGTGTTGCAACATA ] [-] EMBL AGA283029 [ TTTAGCTGAAGGGAAAGCGAATGATAGGGGAGAAAAGTACACAACGTAGTACATACGTAAACACAGCAAATGTTGTTA ] [+] EMBL BX610776 [ AGCTGAAGGGAAAGCGAATGATAGGGGAGAAAAGTACACAACGTAGTACATACGTAAACACAGCAAATGTTGTTAAGGCTGGCGCGTGTGCGCGTTTGTGTTGCAACAAACGAGCTCTAACGAAAAGAGGAAACAAAAAAACGGGACAAAATCAGTAATAAATATAGTTTGAAAGTGACAATGAAAAGCAAAAAACGCGAAGGGTTGTGGAGTAAAAAAAAATAGTCCCAAAACGGTCATTGCAGATTGCAGATCGCGTTGCTTACGGCAATTTTGCTCTACCCTTATTTGTAGCAACAATTTCCGCATTTCCGCACACATTCCGCATTAGCAGCTGCCCTATTTTGCCTTCTCTCTCGTGTGTTGCATTTTGGTTTGCTGATTAAGG] [+] EMBL BX625193 [ CAGATTGCATATCGCGTTGCTTACGGCNATTTTGCTCTACCCTTATTTGTNGCAACAATTTCCGCATTTCCGCACCCGTTCCGCA ] consensusID : consensus_7591#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 726 fasta sequence [GTGTGTTTGCACGTGCTACGAGGAACCTAGAACCCTTGGAGAACTAGCTGCATACGATGCACGCCAGGGTGCAACGCTACTATACCTAAATCCCCAGTTTCTCTTACCCGTTTAGTTAAATAGTGCAGAGGAAAACGGAACGGATTGATGATAGATTTAACCAGCAAAGAGTAGGGATGGCTTCGNAAAGGATCGGACCGGACGAACGGATGTACCAGCTCCGCACCAGGGGTATAGATTGTTTTCTTTATTTCCTTTTTTCTTCCTTCTTCTAGGGTACATTTAAACGAGATAGGATTATGGGGAAGCAGCTCCTTCCCCTGTGTTTTGCTGTAAGAAGAAATTGTACTGCAGGATTATTTGTGAACAAAGAAGAAAAGCATTAGAAAAAGAAAGCAAAACGGTGGAAGTGTAATTGAAACTGAAATCAAACACACAGCGCAGAAGCTAGAGATAAGGATTTATTAGCTAAGTAAATCGTTAGTAGAAGCGGCGAGCGGCAGCTCGCAGCTGCAAAATGGGGTGGAAAACCAGTGGTTGAATTTGCAACAAANGCGACACAAATATCGTGAGTGTGTTGATTGATCGTGTTTAGCTGAAGGGAAAGCNAATGATAGGGGAGAAAAGTACACGACGTAGTACATACGTAAACACAGCAAATCATCCAACACAACCAAATGTTGTTAAGGCTGGCGCGTAAGCGTTTGTGTTGCAACAAACGAGCCC] [+] EMBL BX625416 [GTGTGTTTGCACGTGCTACGAGGAACCTAGAACCCTTGGAGAACTAGCTGCATACGATGCACGCCAGGGTGCAACGCTACTATACCTAAATCCCCAGTTTCTCTTACCCGTTTAGTTAAATAGTGCAGAGGAAAACGGAACGGATTGATGATAGATTTAACCAGCAAAGAGTAGGGATGGCTTCGNAAAGGATCGGACCGGACGAACGGATGTACCAGCTCCGCACCAGGGGTATAGATTGTTTTCTTTATTTCCTTTTTTCTTCCTTCTTCTAGGGTACATTTAAACGAGATAGGATTATGGGGAAGCAGCTCCTTCCCCTGTGTTTTGCTGTAAGAAGAAATTGTACTGCAGGATTATTTGTGAACAAAGAAGAAAAGCATTAGAAAAAGAAAGCAAAACGGTGGAAGTGTAATTGAAACTGAAATCAAACACACAGCGCAAAAGCTAGAGATAAGGATTTATTAGCTAAGTAAATCGTTAGTAGAAGCGGCGAGCGGCAGCTCGCAGCTGCAAAATGGGGTGGAAAACCAGTGGTTGAATTTGCAACAAANGCGACACAAATATCGTGAGTGTGTTGATTGATCGTGTTTAGCTGAAGGGAAAGCNAATGATAGGGGAGAAAAGTACACGACGTAG ] [+] EMBL AGA281416 [ TCTTTATTTCCTTTTTTCTTCCTTCTTCTAGGGTACATTTAAACGAGATAGGATTATGGGGAAGCAGCTCCTTCCCCTGTGTTTTGCTGTAAGAAGAAATTGTACTGCAGGATTATTTGTGAACAAAGAAGAAAAGCATTAGAAAAAGAAAGCAAAACGGTGGAAGTGTAATTGAAACTGAAATCAAACACACAGCGCAGAAGCTAGAGATAAGGATTTATTAGCTAAGTAAATCGTTAGTAGAAGCGGCGAGCGGCA ] [-] EMBL BX621209 [ TCTAGGGTACATTTAAACGAGATAGGATTATGGGGAAGCAGCTCCTTCCCC TGTTTTGCTGTAAGAAGAAATTGTACTGCAGGATTATTTGTGAACAAAGAAGAAAAGCATTAGGAAAAGAAAGCAAAACGGTGGAAGTGTAATTGAAACTGAAATCAAACACACAGCGCAGAAGCTAGAGATAAGTATTTATTAGCTAAGTAAATCGTTAGTAGAAGCGGCGAGCAGCAGCTCGCAGCTGCAAAATGGGGTGGAAAACCAGTGGTTGAATTTGCAACAAAAGCGACACAAATATCGTGAGTGTGTTGTTTGATCGTGTTTAGCTGAAGGGAAAGCGAATGATAGGGGAGAAAAGTACACAAAGTAGTACATACGTAAACACAGCAAATCATCCAACACAACCAAATGTTGTTAAGGCTGGCGCGTAAGCGTTTGTGTTGCAACAAACGAGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7591#0 ------------------------------------------------------------ consensus_7591#1 GTGTGTTTGCACGTGCTACGAGGAACCTAGAACCCTTGGAGAACTAGCTGCATACGATGC 60 consensus_7591#0 ------------------------------------------------------------ consensus_7591#1 ACGCCAGGGTGCAACGCTACTATACCTAAATCCCCAGTTTCTCTTACCCGTTTAGTTAAA 120 consensus_7591#0 ------------------------------------------------------------ consensus_7591#1 TAGTGCAGAGGAAAACGGAACGGATTGATGATAGATTTAACCAGCAAAGAGTAGGGATGG 180 consensus_7591#0 ----------------------------------------------GCGCAACATGCCTG 14 consensus_7591#1 CTTCGNAAAGGATCGGACCGGACGAACGGATGTACCAGCTCCGCACCAGGGGTATAGATT 240 * ** * consensus_7591#0 NCTTTTTGTTGTTANTTTTTTCTTCCTTCTTCTAGGGTACATTTAAACGAGATAGGATTA 74 consensus_7591#1 GTTTTCTTTATTTCCTTTTTTCTTCCTTCTTCTAGGGTACATTTAAACGAGATAGGATTA 300 *** * * ** ********************************************* consensus_7591#0 TGGGGAAGCAGCTCCTTCCCCTGTGTTTTCGCTGTAAGCAAGAAATTGTACTGCAGGATT 134 consensus_7591#1 TGGGGAAGCAGCTCCTTCCCCTGTGTTTT-GCTGTAAG-AAGAAATTGTACTGCAGGATT 358 ***************************** ******** ********************* consensus_7591#0 ATTTGTGAACAAAGAAGAAAAGCATTAGAAAAAGAAAGCAAAACGGTGGAAGTGTAATTG 194 consensus_7591#1 ATTTGTGAACAAAGAAGAAAAGCATTAGAAAAAGAAAGCAAAACGGTGGAAGTGTAATTG 418 ************************************************************ consensus_7591#0 AAACTGAAATCAAACACACAGCGCAGAAGCTAGAGATAAGGATTTATTAGCTAAGTACAA 254 consensus_7591#1 AAACTGAAATCAAACACACAGCGCAGAAGCTAGAGATAAGGATTTATTAGCTAAGTA-AA 477 ********************************************************* ** consensus_7591#0 TCGTTAGTAGAAGCGGCGAGCGGCAGCTCGCAGCTGCAAAATGGGGTGGAAAACCAGTGG 314 consensus_7591#1 TCGTTAGTAGAAGCGGCGAGCGGCAGCTCGCAGCTGCAAAATGGGGTGGAAAACCAGTGG 537 ************************************************************ consensus_7591#0 TTGAATTTGCAACAAAAGCGACACAAATATCGTGAGTGTGTTGATTGATCGTGTTTAGCT 374 consensus_7591#1 TTGAATTTGCAACAAANGCGACACAAATATCGTGAGTGTGTTGATTGATCGTGTTTAGCT 597 **************** ******************************************* consensus_7591#0 GAAGGGAAAGCGAATGATAGGGGAGAAAAGTACACAACGTAGTACATACGTAAACACAGC 434 consensus_7591#1 GAAGGGAAAGCNAATGATAGGGGAGAAAAGTACACGACGTAGTACATACGTAAACACAGC 657 *********** *********************** ************************ consensus_7591#0 AAAT------------------GTTGTTAAGGCTGGCGCGTGTGCGCGTTTGTGTTGCAA 476 consensus_7591#1 AAATCATCCAACACAACCAAATGTTGTTAAGGCTGGCGCGTAAGCG--TTTGTGTTGCAA 715 **** ******************* *** ************ consensus_7591#0 CATACGAGCTCTAACGAAAAGAGGAAACAAAAAAACGGGACAAAATCAGTAATAAATATA 536 consensus_7591#1 CAAACGAGCCC------------------------------------------------- 726 ** ****** * consensus_7591#0 GTTTGAAAGTGACAATGAAAAGCAAAAAACGCGAAGGGTTGTGGAGTAAAAAAAAATAGT 596 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 CCCAAAACGGTCATTGCAGATTGCAGATCGCGTTGCTTACGGCAATTTTGCTCTACCCTT 656 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 ATTTGTAGCAACAATTTCCGCATTTCCGCACACATTCCGCATTAGCAGCTGCCCTATTTT 716 consensus_7591#1 ------------------------------------------------------------ consensus_7591#0 GCCTTCTCTCTCGTGTGTTGCATTTTGGTTTGCTGATTAAGG 758 consensus_7591#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||